Wall clock time and date at job start Sat Apr 11 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36939 * 119.99995 * 2 1 4 4 H 1.07994 * 119.99969 * 161.16730 * 3 2 1 5 5 C 1.38813 * 120.00045 * 340.89855 * 3 2 1 6 6 N 1.31620 * 119.99639 * 346.72914 * 5 3 2 7 7 Si 1.86797 * 120.00161 * 166.73450 * 5 3 2 8 8 H 1.48496 * 109.47108 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47036 * 119.99578 * 7 5 3 10 10 H 1.48492 * 109.47148 * 239.99578 * 7 5 3 11 11 C 1.46491 * 120.00004 * 179.97438 * 2 1 3 12 12 H 1.09004 * 110.64414 * 183.13980 * 11 2 1 13 13 C 1.55157 * 110.71951 * 306.47832 * 11 2 1 14 14 C 1.54914 * 101.58199 * 153.86443 * 13 11 2 15 15 N 1.47427 * 104.83164 * 322.99100 * 14 13 11 16 16 C 1.34776 * 125.64728 * 204.09041 * 15 14 13 17 17 O 1.21276 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.50699 * 119.99910 * 0.04329 * 16 15 14 19 19 C 1.53008 * 109.46911 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47024 * 180.02562 * 19 18 16 21 21 N 1.46501 * 109.47004 * 179.97438 * 20 19 18 22 22 C 1.36369 * 125.96180 * 269.68620 * 21 20 19 23 23 O 1.35630 * 125.99095 * 0.04093 * 22 21 20 24 24 N 1.30905 * 108.02008 * 179.88424 * 22 21 20 25 25 N 1.40114 * 107.94061 * 0.38034 * 24 22 21 26 26 C 1.30906 * 107.94128 * 359.75524 * 25 24 22 27 27 O 1.35627 * 125.98943 * 180.02562 * 26 25 24 28 28 C 1.47023 * 108.70285 * 24.12901 * 15 14 13 29 29 H 1.08999 * 109.46704 * 84.81349 * 1 2 3 30 30 H 1.08995 * 109.47147 * 204.81433 * 1 2 3 31 31 H 1.08999 * 109.47110 * 324.81531 * 1 2 3 32 32 H 0.97005 * 119.99401 * 180.02562 * 6 5 3 33 33 H 1.08996 * 111.00521 * 271.93953 * 13 11 2 34 34 H 1.08997 * 111.00717 * 35.79034 * 13 11 2 35 35 H 1.08998 * 110.37053 * 204.15026 * 14 13 11 36 36 H 1.08998 * 110.45826 * 81.87536 * 14 13 11 37 37 H 1.09001 * 109.47490 * 299.99548 * 18 16 15 38 38 H 1.09000 * 109.46992 * 60.00285 * 18 16 15 39 39 H 1.08998 * 109.46413 * 299.99538 * 19 18 16 40 40 H 1.08992 * 109.46981 * 59.99663 * 19 18 16 41 41 H 1.09000 * 109.46805 * 299.99720 * 20 19 18 42 42 H 1.09001 * 109.47481 * 59.99337 * 20 19 18 43 43 H 0.96696 * 113.99939 * 89.99401 * 23 22 21 44 44 H 0.96691 * 114.00339 * 269.97936 * 27 26 25 45 45 H 1.09000 * 109.87916 * 239.52208 * 28 15 14 46 46 H 1.08996 * 110.01288 * 118.42895 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1863 1.2110 0.3019 5 6 1.5130 2.3550 -0.3934 6 7 0.3510 2.2964 -1.0087 7 14 2.3054 4.0113 -0.0497 8 1 3.5996 3.8054 0.6488 9 1 2.5420 4.7224 -1.3318 10 1 1.4044 4.8227 0.8074 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0922 0.0564 13 6 1.7248 -2.1749 1.1679 14 6 2.0499 -3.5860 0.6174 15 7 1.7501 -3.5071 -0.8239 16 6 1.4406 -4.5496 -1.6200 17 8 1.2120 -4.3669 -2.7970 18 6 1.3783 -5.9423 -1.0477 19 6 1.0098 -6.9325 -2.1544 20 6 0.9459 -8.3464 -1.5732 21 7 0.5925 -9.2944 -2.6327 22 6 -0.6707 -9.6745 -2.9786 23 8 -1.8194 -9.2406 -2.4026 24 7 -0.5804 -10.5289 -3.9662 25 7 0.7781 -10.7096 -4.2576 26 6 1.4695 -9.9552 -3.4413 27 8 2.8212 -9.8491 -3.4062 28 6 1.8455 -2.1029 -1.2491 29 1 -0.3633 0.0929 -1.0235 30 1 -0.3633 -0.9327 0.4313 31 1 -0.3633 0.8399 0.5921 32 1 -0.0938 3.1133 -1.2839 33 1 2.2915 -1.9697 2.0760 34 1 0.6550 -2.0607 1.3427 35 1 1.4184 -4.3346 1.0958 36 1 3.1023 -3.8227 0.7736 37 1 2.3502 -6.2081 -0.6318 38 1 0.6243 -5.9785 -0.2614 39 1 0.0380 -6.6669 -2.5706 40 1 1.7640 -6.8960 -2.9404 41 1 1.9174 -8.6121 -1.1566 42 1 0.1915 -8.3825 -0.7873 43 1 -2.1931 -8.4508 -2.8167 44 1 3.2501 -10.4816 -2.8138 45 1 0.8901 -1.7736 -1.6577 46 1 2.6275 -1.9930 -2.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191050561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:23 Heat of formation + Delta-G solvation = -25.138880 kcal Electronic energy + Delta-G solvation = -29211.438419 eV Core-core repulsion = 24945.731281 eV Total energy + Delta-G solvation = -4265.707138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.29944 -41.10191 -39.11721 -39.03186 -38.03348 -36.70218 -36.50825 -33.71974 -33.20889 -31.23275 -30.67602 -29.73981 -28.15579 -27.90473 -25.27991 -23.97672 -23.82681 -23.34688 -22.60931 -20.88010 -20.22472 -19.74329 -19.60158 -18.97833 -18.17865 -17.72637 -17.56932 -17.26699 -16.84818 -16.48809 -16.31415 -15.88713 -15.40233 -15.16168 -14.99050 -14.69362 -14.45969 -14.08109 -13.97032 -13.70386 -13.55962 -13.38419 -13.30919 -13.13926 -13.04859 -12.86109 -12.78947 -12.51106 -12.39987 -12.33739 -12.18807 -12.06930 -11.95680 -11.78616 -11.50218 -11.39530 -11.10319 -10.88760 -10.66028 -10.55015 -9.63111 -8.87867 -7.85476 -5.32157 0.51890 0.75478 1.15627 1.46148 1.47401 1.57787 1.65069 2.00621 2.23106 2.50076 2.90574 3.27152 3.45889 3.52112 3.59212 3.85928 3.87989 3.97068 4.05024 4.18471 4.28238 4.31151 4.37515 4.39994 4.45055 4.49074 4.60405 4.69614 4.74592 4.81218 4.92051 5.01022 5.07572 5.14121 5.22214 5.26480 5.34243 5.35356 5.45740 5.61967 5.70906 6.24554 6.27962 6.47564 6.62887 6.81379 7.10671 7.18414 7.83042 8.25433 9.18041 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001893 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.404155 B =14791.521770 C =14985.163420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.604 5.604 3 C -0.261 4.261 4 H 0.081 0.919 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.972 3.028 8 H -0.261 1.261 9 H -0.298 1.298 10 H -0.292 1.292 11 C 0.163 3.837 12 H 0.081 0.919 13 C -0.143 4.143 14 C 0.106 3.894 15 N -0.614 5.614 16 C 0.511 3.489 17 O -0.605 6.605 18 C -0.115 4.115 19 C -0.114 4.114 20 C 0.105 3.895 21 N -0.505 5.505 22 C 0.416 3.584 23 O -0.435 6.435 24 N -0.345 5.345 25 N -0.346 5.346 26 C 0.419 3.581 27 O -0.435 6.435 28 C 0.096 3.904 29 H -0.010 1.010 30 H 0.034 0.966 31 H 0.022 0.978 32 H 0.247 0.753 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.433 0.567 44 H 0.436 0.564 45 H 0.029 0.971 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -25.158 8.994 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.326 5.326 3 C -0.391 4.391 4 H 0.099 0.901 5 C -0.254 4.254 6 N -0.590 5.590 7 Si 0.800 3.200 8 H -0.185 1.185 9 H -0.226 1.226 10 H -0.219 1.219 11 C 0.055 3.945 12 H 0.100 0.900 13 C -0.182 4.182 14 C -0.015 4.015 15 N -0.347 5.347 16 C 0.302 3.698 17 O -0.487 6.487 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.017 4.017 21 N -0.225 5.225 22 C 0.105 3.895 23 O -0.238 6.238 24 N -0.189 5.189 25 N -0.191 5.191 26 C 0.108 3.892 27 O -0.239 6.239 28 C -0.030 4.030 29 H 0.009 0.991 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.086 0.914 35 H 0.133 0.867 36 H 0.115 0.885 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.296 0.704 44 H 0.299 0.701 45 H 0.048 0.952 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.319 -25.997 7.181 27.174 hybrid contribution 0.295 2.757 0.214 2.781 sum 3.614 -23.240 7.395 24.655 Atomic orbital electron populations 1.20460 0.82805 0.96056 0.96972 1.44184 1.02059 1.01219 1.85108 1.19706 0.96673 0.85651 1.37055 0.90085 1.25816 0.98364 1.01981 0.99259 1.70298 1.18476 1.26892 1.43327 0.85124 0.78236 0.79766 0.76838 1.18463 1.22564 1.21861 1.21596 0.96209 0.84705 0.92039 0.90046 1.23232 1.02310 0.93894 0.98762 1.22612 1.03002 0.98062 0.77826 1.48698 1.68001 1.06181 1.11867 1.21384 0.75344 0.87767 0.85332 1.90709 1.52344 1.86525 1.19084 1.21558 1.07497 0.87069 0.99358 1.21574 1.02424 0.93115 0.98236 1.22257 1.06404 0.85422 0.87601 1.47211 1.05909 1.37780 1.31561 1.21369 0.81097 0.94971 0.92049 1.84891 1.30712 1.51408 1.56802 1.78243 1.07919 1.19691 1.13069 1.78238 0.96414 1.21839 1.22616 1.21351 0.85205 0.92636 0.90025 1.84974 1.07641 1.62288 1.68957 1.22444 0.99172 0.81958 0.99429 0.99144 0.94777 0.95962 0.94409 0.88143 0.91446 0.86708 0.88501 0.84784 0.84923 0.92534 0.92889 0.85028 0.85326 0.70438 0.70076 0.95229 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 7.79 127.77 1.00 9.80 16 2 N -0.60 -28.66 2.94 -696.16 -2.04 -30.70 16 3 C -0.26 -13.70 9.67 84.03 0.81 -12.89 16 4 H 0.08 4.03 7.80 -2.91 -0.02 4.01 16 5 C -0.06 -3.29 5.11 84.86 0.43 -2.85 16 6 N -0.94 -55.86 10.50 21.65 0.23 -55.63 16 7 Si 0.97 44.23 29.57 68.60 2.03 46.26 16 8 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 9 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 11 C 0.16 5.85 3.45 46.18 0.16 6.01 16 12 H 0.08 2.85 7.90 -2.38 -0.02 2.83 16 13 C -0.14 -3.48 6.59 31.99 0.21 -3.27 16 14 C 0.11 1.72 6.69 86.86 0.58 2.30 16 15 N -0.61 -16.17 3.33 -811.79 -2.70 -18.87 16 16 C 0.51 13.14 7.85 87.66 0.69 13.83 16 17 O -0.60 -22.78 16.31 -3.02 -0.05 -22.83 16 18 C -0.12 -1.19 4.71 29.85 0.14 -1.05 16 19 C -0.11 -1.44 4.83 30.60 0.15 -1.30 16 20 C 0.10 0.59 6.01 86.38 0.52 1.11 16 21 N -0.50 -6.93 2.76 -755.17 -2.08 -9.01 16 22 C 0.42 7.42 9.15 179.72 1.65 9.07 16 23 O -0.43 -5.09 13.57 -89.42 -1.21 -6.31 16 24 N -0.34 -8.78 12.72 -173.66 -2.21 -10.99 16 25 N -0.35 -8.75 12.72 -173.66 -2.21 -10.96 16 26 C 0.42 7.28 9.15 179.72 1.65 8.93 16 27 O -0.43 -4.66 13.58 -89.40 -1.21 -5.87 16 28 C 0.10 3.58 6.51 86.73 0.56 4.15 16 29 H -0.01 -0.55 7.38 -2.39 -0.02 -0.56 16 30 H 0.03 1.38 6.03 -2.39 -0.01 1.37 16 31 H 0.02 1.16 7.08 -2.39 -0.02 1.14 16 32 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.07 1.82 6.05 -2.39 -0.01 1.81 16 35 H 0.11 0.93 7.48 -2.39 -0.02 0.91 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.13 0.53 7.85 -2.39 -0.02 0.51 16 39 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 40 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 41 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.43 1.41 9.06 -74.06 -0.67 0.73 16 44 H 0.44 -0.74 9.06 -74.06 -0.67 -1.42 16 45 H 0.03 1.34 7.13 -2.39 -0.02 1.32 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -90.64 383.00 -3.23 -93.87 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: -0.31 Total: -2.78 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 8.54 Total: 33.83 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -11.02 Total: -136.17 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -2.48 Total: -35.00 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -90.64 -3.23 -93.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191050561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.730 kcal (2) G-P(sol) polarization free energy of solvation -90.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds