Wall clock time and date at job start Sat Apr 11 2020 05:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00177 * 2 1 4 4 H 1.09002 * 110.91280 * 26.10137 * 3 2 1 5 5 C 1.55115 * 111.16466 * 262.16893 * 3 2 1 6 6 N 1.47417 * 104.94355 * 205.12959 * 5 3 2 7 7 C 1.36942 * 125.64959 * 204.03534 * 6 5 3 8 8 H 1.07998 * 120.00006 * 179.97438 * 7 6 5 9 9 C 1.38817 * 119.99723 * 359.96153 * 7 6 5 10 10 N 1.31612 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99609 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47198 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47125 * 120.00509 * 11 9 7 14 14 H 1.48508 * 109.46606 * 239.99928 * 11 9 7 15 15 C 1.47023 * 108.70482 * 24.00614 * 6 5 3 16 16 C 1.54319 * 107.26772 * 358.93736 * 15 6 5 17 17 H 1.09003 * 110.72165 * 96.35587 * 16 15 6 18 18 N 1.46505 * 110.72169 * 219.44564 * 16 15 6 19 19 C 1.34777 * 120.00119 * 271.16316 * 18 16 15 20 20 O 1.21279 * 119.99930 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00194 * 179.97438 * 19 18 16 22 22 O 1.42901 * 109.47460 * 180.02562 * 21 19 18 23 23 C 1.42892 * 114.00185 * 180.02562 * 22 21 19 24 24 C 1.50704 * 109.47136 * 179.97438 * 23 22 21 25 25 N 1.30518 * 126.34487 * 90.02171 * 24 23 22 26 26 N 1.28604 * 109.66680 * 179.97438 * 25 24 23 27 27 C 1.30519 * 109.67489 * 0.02562 * 26 25 24 28 28 N 1.35487 * 126.34300 * 269.97728 * 24 23 22 29 29 C 1.46500 * 126.98328 * 0.03570 * 28 24 23 30 30 H 1.09002 * 109.46825 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46903 * 300.00083 * 1 2 3 32 32 H 1.08998 * 109.46497 * 60.00172 * 1 2 3 33 33 H 1.08999 * 110.41950 * 86.19630 * 5 3 2 34 34 H 1.09007 * 110.20532 * 323.95437 * 5 3 2 35 35 H 0.97004 * 119.99684 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.88004 * 239.52402 * 15 6 5 37 37 H 1.08998 * 109.88625 * 118.35629 * 15 6 5 38 38 H 0.96996 * 119.99754 * 91.15424 * 18 16 15 39 39 H 1.09000 * 109.46923 * 59.99361 * 21 19 18 40 40 H 1.09004 * 109.47150 * 300.00070 * 21 19 18 41 41 H 1.09000 * 109.47365 * 59.99284 * 23 22 21 42 42 H 1.09005 * 109.47155 * 299.99813 * 23 22 21 43 43 H 1.08002 * 126.34231 * 180.02562 * 27 26 25 44 44 H 1.08997 * 109.47389 * 269.97388 * 29 28 24 45 45 H 1.09001 * 109.46836 * 29.97579 * 29 28 24 46 46 H 1.09005 * 109.47349 * 149.97202 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3333 2.0328 0.4480 5 6 2.4182 1.7369 -1.4330 6 7 3.4967 2.7233 -1.2406 7 6 3.8518 3.7015 -2.1306 8 1 4.6597 4.3784 -1.8951 9 6 3.1734 3.8229 -3.3356 10 7 2.1887 2.9981 -3.6224 11 14 3.6573 5.1579 -4.5494 12 1 4.7845 5.9482 -3.9927 13 1 4.0746 4.5342 -5.8308 14 1 2.4967 6.0529 -4.7894 15 6 4.1276 2.4832 0.0655 16 6 3.3824 1.3033 0.7243 17 1 3.9106 0.3664 0.5471 18 7 3.2108 1.5356 2.1606 19 6 4.1627 1.1350 3.0265 20 8 5.1611 0.5818 2.6168 21 6 3.9864 1.3745 4.5039 22 8 5.1207 0.8647 5.2078 23 6 5.0534 1.0416 6.6242 24 6 6.2938 0.4700 7.2613 25 7 7.4078 1.1087 7.4949 26 7 8.2540 0.3144 8.0490 27 6 7.7184 -0.8670 8.1934 28 7 6.4588 -0.8018 7.6983 29 6 5.4755 -1.8864 7.6455 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.5731 2.1943 -1.9475 34 1 2.7854 0.8779 -1.9947 35 1 1.7149 3.0828 -4.4647 36 1 4.0385 3.3726 0.6893 37 1 5.1784 2.2278 -0.0716 38 1 2.4121 1.9779 2.4882 39 1 3.0857 0.8670 4.8492 40 1 3.8945 2.4446 4.6901 41 1 4.1751 0.5265 7.0134 42 1 4.9830 2.1046 6.8547 43 1 8.1912 -1.7353 8.6281 44 1 4.8811 -1.8828 8.5592 45 1 4.8212 -1.7420 6.7858 46 1 5.9926 -2.8415 7.5522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213651328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:06 Heat of formation + Delta-G solvation = 4.821520 kcal Electronic energy + Delta-G solvation = -29204.783242 eV Core-core repulsion = 24940.375284 eV Total energy + Delta-G solvation = -4264.407958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.44067 -39.91257 -38.49976 -37.61363 -35.94103 -35.41757 -34.10189 -32.10452 -31.78244 -29.36557 -28.49844 -28.08246 -27.09773 -26.21040 -26.06979 -24.14475 -22.74103 -21.40433 -20.98652 -20.61802 -19.89246 -17.91494 -17.51821 -17.31024 -16.78123 -16.69186 -16.49697 -16.16836 -15.47430 -15.39511 -15.21122 -14.76193 -14.45031 -14.37030 -14.23105 -13.88349 -13.75095 -13.32605 -13.23352 -12.95110 -12.56293 -12.32137 -12.25516 -11.89466 -11.81407 -11.49777 -11.31670 -11.06699 -10.85776 -10.79536 -10.71349 -10.57706 -10.20248 -10.19565 -9.94764 -9.85951 -9.80235 -9.61857 -9.13825 -8.74058 -8.72029 -6.92511 -5.72111 -3.14988 1.27964 2.05124 2.43361 2.67687 2.88097 3.37490 3.43689 3.46105 3.61609 4.05607 4.06962 4.17415 4.22181 4.40986 4.47260 4.52868 4.61145 4.75478 4.79868 4.86382 4.92022 5.16031 5.16885 5.38036 5.44790 5.45944 5.55162 5.63435 5.64672 5.74062 5.77703 5.88835 6.03061 6.16082 6.39629 6.41478 6.51430 6.67088 6.85274 7.21485 7.52524 7.59742 7.69162 7.75668 8.23571 8.32385 8.39523 9.13912 9.74054 10.36109 11.31919 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002149 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.226435 B =13024.957005 C =14242.573486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.380 6.380 3 C 0.054 3.946 4 H 0.068 0.932 5 C 0.142 3.858 6 N -0.601 5.601 7 C -0.221 4.221 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.130 3.870 16 C 0.137 3.863 17 H 0.102 0.898 18 N -0.714 5.714 19 C 0.512 3.488 20 O -0.516 6.516 21 C 0.046 3.954 22 O -0.355 6.355 23 C 0.149 3.851 24 C 0.175 3.825 25 N -0.270 5.270 26 N -0.296 5.296 27 C 0.155 3.845 28 N -0.469 5.469 29 C 0.069 3.931 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.113 0.887 34 H 0.026 0.974 35 H 0.253 0.747 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.397 0.603 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.221 0.779 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -9.748 24.447 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.086 0.914 5 C 0.016 3.984 6 N -0.329 5.329 7 C -0.349 4.349 8 H 0.099 0.901 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.217 1.217 15 C 0.002 3.998 16 C 0.033 3.967 17 H 0.120 0.880 18 N -0.367 5.367 19 C 0.297 3.703 20 O -0.390 6.390 21 C -0.034 4.034 22 O -0.272 6.272 23 C 0.070 3.930 24 C -0.092 4.092 25 N -0.112 5.112 26 N -0.136 5.136 27 C -0.132 4.132 28 N -0.160 5.160 29 C -0.074 4.074 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.231 0.769 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.238 0.762 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.478 -9.250 23.898 25.745 hybrid contribution -1.485 -0.081 -0.367 1.531 sum -3.963 -9.331 23.531 25.622 Atomic orbital electron populations 1.22709 0.81624 1.01936 0.99918 1.87855 1.19179 1.27733 1.95071 1.24077 0.92535 0.83726 1.00159 0.91427 1.22333 0.94612 0.92112 0.89349 1.44317 1.37096 1.35636 1.15805 1.19155 1.13724 1.06083 0.95944 0.90086 1.24811 0.98545 0.99415 0.97886 1.69755 1.24608 1.38814 1.24036 0.85951 0.77591 0.80724 0.80966 1.20413 1.21649 1.21719 1.21616 0.95943 0.94027 0.88165 1.22191 0.96858 1.00320 0.77355 0.87956 1.45875 1.22303 1.61310 1.07175 1.20056 0.83677 0.79303 0.87303 1.90766 1.28266 1.40775 1.79163 1.22275 0.89588 1.00426 0.91142 1.88103 1.41388 1.81426 1.16306 1.20500 0.90086 1.00862 0.81519 1.24271 0.99028 0.82700 1.03206 1.74291 0.97702 1.25500 1.13720 1.74309 1.23905 0.99490 1.15903 1.26515 0.83053 1.01013 1.02629 1.46183 1.13813 1.11006 1.45007 1.22192 0.91911 0.88728 1.04523 0.90316 0.94837 0.93496 0.86918 0.95551 0.93645 0.95134 0.94735 0.76877 0.90022 0.89531 0.91049 0.89014 0.76224 0.89733 0.88639 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.64 10.52 -35.23 -0.37 -7.01 16 3 C 0.05 1.00 3.17 -24.47 -0.08 0.93 16 4 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 5 C 0.14 3.39 5.63 -2.42 -0.01 3.38 16 6 N -0.60 -15.32 3.40 -169.95 -0.58 -15.90 16 7 C -0.22 -6.12 10.27 -15.05 -0.15 -6.27 16 8 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 9 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 10 N -0.92 -26.39 10.09 55.49 0.56 -25.83 16 11 Si 0.92 21.90 29.55 -169.99 -5.02 16.88 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.13 2.80 7.00 -3.07 -0.02 2.78 16 16 C 0.14 2.52 3.00 -66.10 -0.20 2.32 16 17 H 0.10 2.11 7.62 -51.93 -0.40 1.71 16 18 N -0.71 -9.91 5.12 -52.03 -0.27 -10.18 16 19 C 0.51 7.49 7.91 -10.99 -0.09 7.41 16 20 O -0.52 -10.31 16.18 -14.35 -0.23 -10.54 16 21 C 0.05 0.43 6.42 36.00 0.23 0.66 16 22 O -0.36 -4.27 9.86 -55.14 -0.54 -4.81 16 23 C 0.15 1.23 6.11 36.01 0.22 1.45 16 24 C 0.18 1.93 7.66 -154.99 -1.19 0.75 16 25 N -0.27 -3.90 12.21 32.80 0.40 -3.50 16 26 N -0.30 -3.98 12.21 29.69 0.36 -3.62 16 27 C 0.16 1.36 12.74 -89.95 -1.15 0.21 16 28 N -0.47 -3.82 3.15 -122.69 -0.39 -4.20 16 29 C 0.07 0.23 10.89 59.85 0.65 0.88 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.09 8.54 -40.82 -0.35 3.74 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.32 7.85 -51.93 -0.41 -0.09 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.22 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.09 0.35 7.81 -51.93 -0.41 -0.06 16 46 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 389.76 15.07 5.87 5.87 Total: -1.00 -39.68 389.76 -7.86 -47.54 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.87 Total: -0.34 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: -0.78 Total: 15.64 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: 0.09 Total: -63.23 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -1.15 Total: -22.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.68 -7.86 -47.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213651328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.358 kcal (2) G-P(sol) polarization free energy of solvation -39.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds