Wall clock time and date at job start Sat Apr 11 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00177 * 2 1 4 4 H 1.09002 * 110.91280 * 26.10137 * 3 2 1 5 5 C 1.55115 * 111.16466 * 262.16893 * 3 2 1 6 6 N 1.47417 * 104.94355 * 205.12959 * 5 3 2 7 7 C 1.36942 * 125.64959 * 204.03534 * 6 5 3 8 8 H 1.07998 * 120.00006 * 179.97438 * 7 6 5 9 9 C 1.38817 * 119.99723 * 359.96153 * 7 6 5 10 10 N 1.31612 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99609 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47198 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.47125 * 120.00509 * 11 9 7 14 14 H 1.48508 * 109.46606 * 239.99928 * 11 9 7 15 15 C 1.47023 * 108.70482 * 24.00614 * 6 5 3 16 16 C 1.54319 * 107.26772 * 358.93736 * 15 6 5 17 17 H 1.09003 * 110.72165 * 96.35587 * 16 15 6 18 18 N 1.46505 * 110.72169 * 219.44564 * 16 15 6 19 19 C 1.34777 * 120.00119 * 271.16316 * 18 16 15 20 20 O 1.21279 * 119.99930 * 359.97438 * 19 18 16 21 21 C 1.50696 * 120.00194 * 179.97438 * 19 18 16 22 22 O 1.42901 * 109.47460 * 180.02562 * 21 19 18 23 23 C 1.42892 * 114.00185 * 180.02562 * 22 21 19 24 24 C 1.50704 * 109.47136 * 179.97438 * 23 22 21 25 25 N 1.30518 * 126.34487 * 90.02171 * 24 23 22 26 26 N 1.28604 * 109.66680 * 179.97438 * 25 24 23 27 27 C 1.30519 * 109.67489 * 0.02562 * 26 25 24 28 28 N 1.35487 * 126.34300 * 269.97728 * 24 23 22 29 29 C 1.46500 * 126.98328 * 0.03570 * 28 24 23 30 30 H 1.09002 * 109.46825 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46903 * 300.00083 * 1 2 3 32 32 H 1.08998 * 109.46497 * 60.00172 * 1 2 3 33 33 H 1.08999 * 110.41950 * 86.19630 * 5 3 2 34 34 H 1.09007 * 110.20532 * 323.95437 * 5 3 2 35 35 H 0.97004 * 119.99684 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.88004 * 239.52402 * 15 6 5 37 37 H 1.08998 * 109.88625 * 118.35629 * 15 6 5 38 38 H 0.96996 * 119.99754 * 91.15424 * 18 16 15 39 39 H 1.09000 * 109.46923 * 59.99361 * 21 19 18 40 40 H 1.09004 * 109.47150 * 300.00070 * 21 19 18 41 41 H 1.09000 * 109.47365 * 59.99284 * 23 22 21 42 42 H 1.09005 * 109.47155 * 299.99813 * 23 22 21 43 43 H 1.08002 * 126.34231 * 180.02562 * 27 26 25 44 44 H 1.08997 * 109.47389 * 269.97388 * 29 28 24 45 45 H 1.09001 * 109.46836 * 29.97579 * 29 28 24 46 46 H 1.09005 * 109.47349 * 149.97202 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3333 2.0328 0.4480 5 6 2.4182 1.7369 -1.4330 6 7 3.4967 2.7233 -1.2406 7 6 3.8518 3.7015 -2.1306 8 1 4.6597 4.3784 -1.8951 9 6 3.1734 3.8229 -3.3356 10 7 2.1887 2.9981 -3.6224 11 14 3.6573 5.1579 -4.5494 12 1 4.7845 5.9482 -3.9927 13 1 4.0746 4.5342 -5.8308 14 1 2.4967 6.0529 -4.7894 15 6 4.1276 2.4832 0.0655 16 6 3.3824 1.3033 0.7243 17 1 3.9106 0.3664 0.5471 18 7 3.2108 1.5356 2.1606 19 6 4.1627 1.1350 3.0265 20 8 5.1611 0.5818 2.6168 21 6 3.9864 1.3745 4.5039 22 8 5.1207 0.8647 5.2078 23 6 5.0534 1.0416 6.6242 24 6 6.2938 0.4700 7.2613 25 7 7.4078 1.1087 7.4949 26 7 8.2540 0.3144 8.0490 27 6 7.7184 -0.8670 8.1934 28 7 6.4588 -0.8018 7.6983 29 6 5.4755 -1.8864 7.6455 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.5731 2.1943 -1.9475 34 1 2.7854 0.8779 -1.9947 35 1 1.7149 3.0828 -4.4647 36 1 4.0385 3.3726 0.6893 37 1 5.1784 2.2278 -0.0716 38 1 2.4121 1.9779 2.4882 39 1 3.0857 0.8670 4.8492 40 1 3.8945 2.4446 4.6901 41 1 4.1751 0.5265 7.0134 42 1 4.9830 2.1046 6.8547 43 1 8.1912 -1.7353 8.6281 44 1 4.8811 -1.8828 8.5592 45 1 4.8212 -1.7420 6.7858 46 1 5.9926 -2.8415 7.5522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213651328.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:05 Heat of formation + Delta-G solvation = -25.382860 kcal Electronic energy + Delta-G solvation = -29206.093002 eV Core-core repulsion = 24940.375284 eV Total energy + Delta-G solvation = -4265.717718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.13504 -41.15375 -39.77733 -38.60596 -37.50563 -36.00925 -35.63863 -33.75039 -32.71030 -30.86803 -29.73156 -28.68685 -28.28584 -27.49978 -27.05734 -25.84438 -23.40703 -22.56590 -22.15379 -22.01811 -21.38499 -19.22915 -18.59799 -18.20203 -17.92586 -17.75286 -17.34096 -17.18936 -16.93284 -16.30554 -16.19015 -16.05933 -15.78345 -15.57617 -15.39732 -15.13093 -14.78617 -14.48451 -14.26687 -13.94259 -13.77051 -13.64674 -13.27184 -13.18856 -13.02094 -12.94851 -12.76536 -12.58474 -12.52753 -12.33249 -12.02328 -11.92195 -11.58098 -11.44313 -11.13362 -11.01338 -10.83494 -10.81781 -10.56935 -10.43215 -10.12902 -8.98529 -7.82456 -5.29592 0.62471 1.46328 1.47944 1.51350 1.57108 1.58568 1.68257 1.93067 2.43824 2.73862 2.89301 3.28422 3.42875 3.58039 3.64133 3.72567 3.86057 3.87368 3.96603 3.98415 4.05411 4.20722 4.26524 4.34789 4.36176 4.40929 4.49050 4.60381 4.62992 4.68735 4.70305 4.83705 4.87059 4.91256 4.92019 5.10134 5.28580 5.41894 5.43876 5.67907 5.84896 5.93648 6.18658 6.32276 6.54382 7.03828 7.24039 7.65218 7.67894 8.29967 9.19091 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002149 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.226435 B =13024.957005 C =14242.573486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.080 3.920 4 H 0.097 0.903 5 C 0.144 3.856 6 N -0.619 5.619 7 C -0.242 4.242 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.983 3.017 12 H -0.269 1.269 13 H -0.294 1.294 14 H -0.284 1.284 15 C 0.129 3.871 16 C 0.154 3.846 17 H 0.075 0.925 18 N -0.697 5.697 19 C 0.507 3.493 20 O -0.579 6.579 21 C 0.055 3.945 22 O -0.397 6.397 23 C 0.149 3.851 24 C 0.165 3.835 25 N -0.328 5.328 26 N -0.353 5.353 27 C 0.167 3.833 28 N -0.466 5.466 29 C 0.061 3.939 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.089 0.911 34 H -0.014 1.014 35 H 0.250 0.750 36 H 0.045 0.955 37 H 0.009 0.991 38 H 0.420 0.580 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.265 0.735 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.760 -10.147 27.025 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.314 6.314 3 C 0.021 3.979 4 H 0.114 0.886 5 C 0.019 3.981 6 N -0.347 5.347 7 C -0.370 4.370 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.811 3.189 12 H -0.194 1.194 13 H -0.221 1.221 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.048 3.952 17 H 0.093 0.907 18 N -0.351 5.351 19 C 0.294 3.706 20 O -0.457 6.457 21 C -0.024 4.024 22 O -0.315 6.315 23 C 0.071 3.929 24 C -0.105 4.105 25 N -0.170 5.170 26 N -0.193 5.193 27 C -0.121 4.121 28 N -0.156 5.156 29 C -0.080 4.080 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.004 0.996 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.027 0.973 38 H 0.258 0.742 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.280 0.720 44 H 0.130 0.870 45 H 0.114 0.886 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.862 -9.645 26.531 28.645 hybrid contribution -0.773 -0.078 -1.161 1.397 sum -5.634 -9.723 25.370 27.747 Atomic orbital electron populations 1.23007 0.79153 1.03928 1.00874 1.87850 1.21867 1.26778 1.94926 1.23617 0.93076 0.85030 0.96221 0.88553 1.22116 0.93170 0.90178 0.92685 1.44566 1.37939 1.35359 1.16821 1.19473 1.13917 1.06718 0.96940 0.90124 1.25646 0.98691 1.01622 0.99513 1.69989 1.25319 1.40110 1.24175 0.84941 0.77575 0.78152 0.78208 1.19360 1.22067 1.21081 1.21692 0.94879 0.95913 0.87230 1.21599 0.95986 0.97533 0.80098 0.90697 1.45592 1.23364 1.61204 1.04967 1.21140 0.82270 0.77473 0.89667 1.90748 1.30816 1.43582 1.80574 1.22376 0.90547 1.02894 0.86593 1.88032 1.43035 1.82054 1.18346 1.20798 0.90376 1.02049 0.79644 1.24809 0.99074 0.83739 1.02838 1.74147 0.99437 1.27563 1.15839 1.74162 1.25419 1.01504 1.18181 1.27326 0.83159 1.00846 1.00795 1.46478 1.14255 1.11079 1.43789 1.22578 0.91476 0.87950 1.05950 0.87944 0.91582 0.94748 0.89313 0.99648 0.93992 0.93699 0.97253 0.74154 0.84979 0.86401 0.86489 0.88091 0.71972 0.86964 0.88616 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.85 113.37 1.23 1.86 16 2 O -0.40 -13.34 10.52 -148.98 -1.57 -14.91 16 3 C 0.08 2.90 3.17 32.06 0.10 3.00 16 4 H 0.10 2.95 7.69 -2.39 -0.02 2.93 16 5 C 0.14 7.16 5.63 86.93 0.49 7.65 16 6 N -0.62 -32.54 3.40 -691.59 -2.35 -34.88 16 7 C -0.24 -13.71 10.27 84.03 0.86 -12.85 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 10 N -0.95 -55.57 10.09 21.65 0.22 -55.35 16 11 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 13 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 15 C 0.13 5.72 7.00 86.73 0.61 6.33 16 16 C 0.15 5.66 3.00 46.18 0.14 5.79 16 17 H 0.07 3.20 7.62 -2.39 -0.02 3.18 16 18 N -0.70 -17.80 5.12 -436.92 -2.24 -20.03 16 19 C 0.51 13.96 7.91 87.66 0.69 14.65 16 20 O -0.58 -23.47 16.18 16.01 0.26 -23.21 16 21 C 0.05 0.82 6.42 71.23 0.46 1.27 16 22 O -0.40 -8.63 9.86 -129.94 -1.28 -9.91 16 23 C 0.15 2.04 6.11 71.24 0.44 2.48 16 24 C 0.16 3.45 7.66 137.98 1.06 4.51 16 25 N -0.33 -9.70 12.21 -50.16 -0.61 -10.32 16 26 N -0.35 -9.68 12.21 -59.99 -0.73 -10.41 16 27 C 0.17 2.71 12.74 180.11 2.30 5.00 16 28 N -0.47 -6.64 3.15 -542.07 -1.71 -8.34 16 29 C 0.06 0.20 10.89 127.77 1.39 1.59 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 32 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 4.83 5.87 -2.39 -0.01 4.82 16 34 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 35 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 37 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.42 6.91 8.54 -92.71 -0.79 6.12 16 39 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.12 0.47 7.85 -2.39 -0.02 0.45 16 42 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.26 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H 0.10 0.36 7.81 -2.39 -0.02 0.34 16 46 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 Total: -1.00 -95.46 389.76 2.46 -93.00 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.21 Total: 8.53 kcal Atomic # 6 Polarization: 28.03 SS G_CDS: 10.22 Total: 38.25 kcal Atomic # 7 Polarization: -131.93 SS G_CDS: -7.42 Total: -139.34 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -2.59 Total: -48.02 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -95.46 2.46 -93.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213651328.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.618 kcal (2) G-P(sol) polarization free energy of solvation -95.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds