Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35902 * 117.00061 * 2 1 4 4 C 1.38752 * 120.05665 * 0.02978 * 3 2 1 5 5 C 1.38128 * 119.94432 * 179.70317 * 4 3 2 6 6 C 1.38281 * 120.05443 * 0.54193 * 5 4 3 7 7 C 1.50697 * 119.94383 * 179.72777 * 6 5 4 8 8 O 1.42901 * 109.47195 * 359.72368 * 7 6 5 9 9 C 1.42896 * 114.00228 * 174.53371 * 8 7 6 10 10 H 1.09004 * 109.47031 * 333.70026 * 9 8 7 11 11 C 1.50701 * 109.47378 * 213.69644 * 9 8 7 12 12 H 1.07992 * 119.99740 * 354.06160 * 11 9 8 13 13 C 1.37880 * 119.99886 * 174.05533 * 11 9 8 14 14 N 1.31514 * 119.99900 * 0.02562 * 13 11 9 15 15 Si 1.86792 * 119.99585 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47745 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47241 * 120.00605 * 15 13 11 18 18 H 1.48504 * 109.47277 * 240.00152 * 15 13 11 19 19 C 1.53005 * 109.47087 * 93.69494 * 9 8 7 20 20 N 1.46898 * 109.46894 * 58.81572 * 19 9 8 21 21 C 1.46901 * 109.46952 * 64.04769 * 20 19 9 22 22 C 1.46898 * 109.46899 * 184.04465 * 20 19 9 23 23 C 1.46894 * 109.47157 * 304.05164 * 20 19 9 24 24 C 1.38252 * 120.11374 * 359.44967 * 6 5 4 25 25 N 1.47999 * 119.97241 * 180.25253 * 24 6 5 26 26 O 1.21804 * 119.99864 * 180.02562 * 25 24 6 27 27 O 1.21802 * 120.00319 * 0.02562 * 25 24 6 28 28 C 1.38160 * 120.05252 * 0.27679 * 24 6 5 29 29 H 1.08995 * 109.47077 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46885 * 299.99936 * 1 2 3 31 31 H 1.09003 * 109.46704 * 59.99519 * 1 2 3 32 32 H 1.08001 * 120.02648 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.97257 * 180.28974 * 5 4 3 34 34 H 1.08996 * 109.47336 * 119.72588 * 7 6 5 35 35 H 1.09005 * 109.47356 * 239.72106 * 7 6 5 36 36 H 0.97005 * 119.99228 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.46893 * 178.81914 * 19 9 8 38 38 H 1.08996 * 109.47213 * 298.81571 * 19 9 8 39 39 H 1.09004 * 109.47019 * 40.77001 * 21 20 19 40 40 H 1.09002 * 109.47449 * 160.76848 * 21 20 19 41 41 H 1.09006 * 109.47212 * 280.77026 * 21 20 19 42 42 H 1.09003 * 109.46845 * 60.00779 * 22 20 19 43 43 H 1.09001 * 109.46995 * 179.97438 * 22 20 19 44 44 H 1.08997 * 109.47295 * 300.00182 * 22 20 19 45 45 H 1.08991 * 109.47956 * 81.69697 * 23 20 19 46 46 H 1.09005 * 109.47229 * 201.69836 * 23 20 19 47 47 H 1.09004 * 109.47399 * 321.69119 * 23 20 19 48 48 H 1.08005 * 120.02892 * 179.97438 * 28 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0006 5 6 1.9209 3.6048 0.0068 6 6 3.3019 3.6758 0.0011 7 6 3.9861 5.0185 0.0017 8 8 3.0019 6.0546 0.0021 9 6 3.5438 7.3709 0.1270 10 1 4.5002 7.3222 0.6476 11 6 2.5891 8.2350 0.9100 12 1 1.6205 7.8502 1.1929 13 6 2.9523 9.5168 1.2651 14 7 4.1317 9.9855 0.9202 15 14 1.7686 10.5880 2.2350 16 1 0.5171 9.8324 2.4958 17 1 2.3929 10.9717 3.5266 18 1 1.4549 11.8116 1.4541 19 6 3.7508 7.9715 -1.2649 20 7 2.4666 8.0109 -1.9771 21 6 1.5452 8.9146 -1.2756 22 6 2.6810 8.4968 -3.3467 23 6 1.8895 6.6608 -2.0212 24 6 4.0561 2.5171 0.0006 25 7 5.5339 2.5967 0.0001 26 8 6.1988 1.5762 -0.0008 27 8 6.0853 3.6828 0.0006 28 6 3.4312 1.2849 0.0001 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 0.2128 2.3204 0.0007 33 1 1.3341 4.5114 0.0120 34 1 4.6089 5.1086 0.8916 35 1 4.6089 5.1094 -0.8883 36 1 4.3870 10.8875 1.1698 37 1 4.1445 8.9834 -1.1692 38 1 4.4576 7.3581 -1.8238 39 1 2.0878 9.7989 -0.9412 40 1 0.7444 9.2138 -1.9518 41 1 1.1196 8.4017 -0.4130 42 1 3.3647 7.8262 -3.8673 43 1 1.7282 8.5256 -3.8754 44 1 3.1092 9.4986 -3.3140 45 1 1.3823 6.4514 -1.0795 46 1 1.1739 6.5980 -2.8410 47 1 2.6841 5.9308 -2.1760 48 1 4.0207 0.3799 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223513350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = 58.408125 kcal Electronic energy + Delta-G solvation = -31666.609153 eV Core-core repulsion = 27424.002306 eV Total energy + Delta-G solvation = -4242.606848 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.28907 -43.12351 -41.51821 -39.49226 -38.23336 -37.51542 -35.12605 -33.14927 -32.87867 -31.14461 -30.20852 -29.94193 -29.23745 -27.86601 -27.47212 -26.50183 -24.56827 -23.90170 -22.91741 -22.75958 -20.51992 -19.62596 -19.15740 -18.57078 -18.51384 -18.27281 -18.16121 -17.98286 -17.31695 -17.13311 -17.09083 -16.60092 -16.45313 -15.81489 -15.44695 -15.04602 -14.94268 -14.72604 -14.48187 -14.29640 -13.93820 -13.86511 -13.80835 -13.67028 -13.57716 -13.40217 -13.20815 -12.99190 -12.71171 -12.57645 -12.45551 -12.42895 -12.32333 -12.22101 -12.01807 -11.86306 -11.65661 -11.12229 -10.82892 -10.55040 -10.19328 -9.61740 -7.99969 -6.08630 -1.24901 -0.21022 0.28666 0.33054 0.61402 1.86869 1.88186 2.02827 2.05189 2.10026 2.41902 2.58056 2.62610 2.65255 2.84338 3.22664 3.30750 3.35285 3.38167 3.43806 3.54136 3.54939 3.68388 3.75379 3.80433 3.85356 3.88187 3.90863 3.98097 4.08049 4.15884 4.25924 4.28067 4.33996 4.34686 4.43041 4.47562 4.57332 4.67892 4.75035 4.86673 4.88930 4.91398 5.23706 5.41937 5.86610 5.89848 6.09803 6.34271 6.68150 6.99759 7.60068 9.05753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.307 6.307 3 C 0.131 3.869 4 C -0.157 4.157 5 C -0.060 4.060 6 C -0.056 4.056 7 C 0.096 3.904 8 O -0.394 6.394 9 C 0.200 3.800 10 H 0.072 0.928 11 C -0.553 4.553 12 H 0.083 0.917 13 C 0.071 3.929 14 N -0.873 5.873 15 Si 0.898 3.102 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.022 4.022 20 N -0.248 5.248 21 C -0.035 4.035 22 C -0.042 4.042 23 C -0.027 4.027 24 C -0.004 4.004 25 N 0.028 4.972 26 O -0.154 6.154 27 O -0.154 6.154 28 C -0.091 4.091 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.283 0.717 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.134 0.866 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.453 -3.168 -11.736 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.220 6.220 3 C 0.084 3.916 4 C -0.176 4.176 5 C -0.079 4.079 6 C -0.057 4.057 7 C 0.020 3.980 8 O -0.315 6.315 9 C 0.143 3.857 10 H 0.090 0.910 11 C -0.590 4.590 12 H 0.101 0.899 13 C -0.137 4.137 14 N -0.507 5.507 15 Si 0.723 3.277 16 H -0.188 1.188 17 H -0.195 1.195 18 H -0.200 1.200 19 C -0.143 4.143 20 N 0.094 4.906 21 C -0.176 4.176 22 C -0.184 4.184 23 C -0.168 4.168 24 C -0.088 4.088 25 N 0.547 4.453 26 O -0.370 6.370 27 O -0.369 6.369 28 C -0.111 4.111 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.163 0.837 38 H 0.107 0.893 39 H 0.135 0.865 40 H 0.097 0.903 41 H 0.169 0.831 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.152 0.848 46 H 0.109 0.891 47 H 0.123 0.877 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -10.129 -3.259 -11.729 15.836 hybrid contribution 0.136 0.726 0.613 0.960 sum -9.993 -2.533 -11.116 15.161 Atomic orbital electron populations 1.23243 0.76963 1.05155 1.01787 1.86143 1.22364 1.25377 1.88089 1.18615 0.90993 0.85337 0.96619 1.21800 1.01555 0.91939 1.02326 1.20901 0.92319 0.98350 0.96296 1.19629 0.94172 0.93383 0.98552 1.21515 0.90028 0.83526 1.02948 1.87847 1.33460 1.15954 1.94196 1.20152 0.99041 0.77756 0.88704 0.91014 1.20989 1.02797 0.97393 1.37781 0.89937 1.24993 0.95878 0.98056 0.94772 1.69740 1.18721 1.18851 1.43379 0.86367 0.80566 0.79792 0.80964 1.18850 1.19535 1.19961 1.24776 0.81362 1.09726 0.98411 1.45705 1.16780 1.14746 1.13330 1.24757 0.94159 0.97748 1.00894 1.24025 1.06923 1.05157 0.82337 1.24226 1.02638 0.82199 1.07755 1.20467 0.79550 0.95269 1.13488 1.43511 1.03182 1.00624 0.97998 1.94588 1.63992 1.25313 1.53133 1.94543 1.73501 1.15816 1.52998 1.20024 0.92718 0.97428 1.00918 0.87272 0.91960 0.92089 0.83396 0.82215 0.89567 0.90775 0.90633 0.83666 0.89304 0.86463 0.90313 0.83056 0.87436 0.87313 0.86872 0.84784 0.89099 0.87718 0.81979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 101.05 0.99 0.88 16 2 O -0.31 0.31 10.50 -19.43 -0.20 0.10 16 3 C 0.13 -0.14 6.69 -39.21 -0.26 -0.40 16 4 C -0.16 0.51 9.04 -39.43 -0.36 0.15 16 5 C -0.06 0.18 9.37 -39.61 -0.37 -0.19 16 6 C -0.06 0.05 5.88 -104.60 -0.62 -0.57 16 7 C 0.10 -0.08 4.07 36.00 0.15 0.07 16 8 O -0.39 0.78 4.31 -35.23 -0.15 0.62 16 9 C 0.20 0.05 2.24 -27.88 -0.06 -0.01 16 10 H 0.07 0.29 7.66 -51.93 -0.40 -0.11 16 11 C -0.55 -1.62 5.29 -34.44 -0.18 -1.80 16 12 H 0.08 0.26 7.04 -52.49 -0.37 -0.11 16 13 C 0.07 0.38 3.64 -17.82 -0.06 0.31 16 14 N -0.87 -6.01 11.76 55.43 0.65 -5.36 16 15 Si 0.90 5.14 29.54 -169.99 -5.02 0.12 16 16 H -0.26 -1.51 7.11 56.52 0.40 -1.11 16 17 H -0.27 -2.27 7.11 56.52 0.40 -1.87 16 18 H -0.27 -1.60 7.11 56.52 0.40 -1.20 16 19 C -0.02 0.08 4.06 -3.82 -0.02 0.07 16 20 N -0.25 1.98 0.05 -395.62 -0.02 1.96 16 21 C -0.04 0.21 6.89 60.06 0.41 0.63 16 22 C -0.04 0.45 7.85 60.06 0.47 0.92 16 23 C -0.03 0.24 7.00 60.06 0.42 0.66 16 24 C 0.00 0.00 6.84 -79.98 -0.55 -0.55 16 25 N 0.03 0.10 4.45 33.95 0.15 0.25 16 26 O -0.15 -0.76 18.45 -29.46 -0.54 -1.30 16 27 O -0.15 -0.61 15.41 -29.46 -0.45 -1.06 16 28 C -0.09 -0.03 9.49 -39.43 -0.37 -0.40 16 29 H 0.11 -0.62 8.14 -51.93 -0.42 -1.04 16 30 H 0.06 -0.34 7.66 -51.93 -0.40 -0.74 16 31 H 0.06 -0.37 7.66 -51.93 -0.40 -0.77 16 32 H 0.15 -0.86 6.30 -52.49 -0.33 -1.19 16 33 H 0.16 -0.77 6.41 -52.49 -0.34 -1.11 16 34 H 0.09 0.14 7.13 -51.93 -0.37 -0.23 16 35 H 0.07 -0.13 7.30 -51.93 -0.38 -0.51 16 36 H 0.28 2.16 8.31 -40.82 -0.34 1.82 16 37 H 0.15 -0.20 6.29 -51.93 -0.33 -0.53 16 38 H 0.09 -0.49 8.05 -51.93 -0.42 -0.91 16 39 H 0.12 -0.37 6.06 -51.93 -0.31 -0.69 16 40 H 0.08 -0.71 7.81 -51.93 -0.41 -1.11 16 41 H 0.15 -0.66 4.49 -51.93 -0.23 -0.89 16 42 H 0.11 -1.24 8.12 -51.93 -0.42 -1.66 16 43 H 0.11 -1.36 7.86 -51.93 -0.41 -1.77 16 44 H 0.11 -1.16 8.14 -51.93 -0.42 -1.58 16 45 H 0.13 -1.02 5.20 -51.93 -0.27 -1.29 16 46 H 0.09 -1.04 7.76 -51.93 -0.40 -1.44 16 47 H 0.10 -0.88 6.76 -51.93 -0.35 -1.23 16 48 H 0.16 0.03 7.61 -52.48 -0.40 -0.37 16 LS Contribution 371.72 15.07 5.60 5.60 Total: 0.00 -13.63 371.72 -7.31 -20.94 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -6.91 Total: -21.64 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -0.41 Total: -0.24 kcal Atomic # 7 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 8 Polarization: -0.28 SS G_CDS: -1.35 Total: -1.64 kcal Atomic # 14 Polarization: 5.14 SS G_CDS: -5.02 Total: 0.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -13.63 -7.31 -20.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223513350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.350 kcal (2) G-P(sol) polarization free energy of solvation -13.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds