Wall clock time and date at job start Sat Apr 11 2020 05:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00489 * 2 1 4 4 C 1.38758 * 120.05226 * 359.72146 * 3 2 1 5 5 C 1.38123 * 119.94152 * 179.74424 * 4 3 2 6 6 C 1.38287 * 120.05661 * 0.53650 * 5 4 3 7 7 C 1.50703 * 119.94493 * 179.71747 * 6 5 4 8 8 O 1.42891 * 109.47109 * 270.02060 * 7 6 5 9 9 C 1.42905 * 114.00170 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46502 * 30.00323 * 9 8 7 11 11 C 1.50700 * 109.47263 * 270.00356 * 9 8 7 12 12 H 1.07998 * 120.00150 * 119.99009 * 11 9 8 13 13 C 1.37878 * 119.99669 * 299.99801 * 11 9 8 14 14 N 1.31519 * 120.00131 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99896 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47045 * 89.99826 * 15 13 11 17 17 H 1.48498 * 109.47489 * 209.99881 * 15 13 11 18 18 H 1.48500 * 109.47028 * 329.99915 * 15 13 11 19 19 C 1.52997 * 109.47301 * 149.99727 * 9 8 7 20 20 N 1.46900 * 109.47470 * 293.29212 * 19 9 8 21 21 C 1.46896 * 109.46750 * 64.51582 * 20 19 9 22 22 C 1.46895 * 109.46955 * 184.51264 * 20 19 9 23 23 C 1.46896 * 109.47026 * 304.51647 * 20 19 9 24 24 C 1.38247 * 120.10830 * 359.74040 * 6 5 4 25 25 C 1.38163 * 120.05851 * 359.97438 * 24 6 5 26 26 N 1.48004 * 120.02650 * 180.02562 * 25 24 6 27 27 O 1.21791 * 120.00330 * 359.97169 * 26 25 24 28 28 O 1.21801 * 119.99502 * 179.97438 * 26 25 24 29 29 H 1.08997 * 109.47303 * 60.00082 * 1 2 3 30 30 H 1.09005 * 109.47354 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47046 * 299.99933 * 1 2 3 32 32 H 1.07998 * 120.02703 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.96973 * 180.27215 * 5 4 3 34 34 H 1.09000 * 109.46649 * 30.02091 * 7 6 5 35 35 H 1.09000 * 109.46871 * 150.01871 * 7 6 5 36 36 H 0.96998 * 119.99710 * 179.97438 * 14 13 11 37 37 H 1.09005 * 109.47074 * 53.29334 * 19 9 8 38 38 H 1.09000 * 109.47163 * 173.29032 * 19 9 8 39 39 H 1.09000 * 109.47773 * 50.77030 * 21 20 19 40 40 H 1.09008 * 109.47019 * 170.76533 * 21 20 19 41 41 H 1.09003 * 109.47577 * 290.76235 * 21 20 19 42 42 H 1.09000 * 109.46969 * 60.00500 * 22 20 19 43 43 H 1.09009 * 109.46905 * 179.97438 * 22 20 19 44 44 H 1.08991 * 109.47593 * 300.00050 * 22 20 19 45 45 H 1.08996 * 109.47433 * 59.99599 * 23 20 19 46 46 H 1.08996 * 109.46813 * 179.97438 * 23 20 19 47 47 H 1.09005 * 109.46890 * 299.99768 * 23 20 19 48 48 H 1.08000 * 119.96721 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0058 5 6 1.9210 3.6047 -0.0005 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0011 8 8 4.2021 5.4424 -1.3485 9 6 4.8484 6.7119 -1.4619 10 1 5.5027 6.8644 -0.6036 11 6 3.8094 7.8028 -1.5017 12 1 3.8045 8.5718 -0.7435 13 6 2.8649 7.8189 -2.5061 14 7 2.8711 6.8826 -3.4296 15 14 1.5766 9.1706 -2.5550 16 1 2.0869 10.3120 -3.3563 17 1 0.3331 8.6471 -3.1754 18 1 1.2856 9.6273 -1.1723 19 6 5.6768 6.7495 -2.7477 20 7 6.7888 5.7954 -2.6418 21 6 6.2553 4.4298 -2.5511 22 6 7.6457 5.9085 -3.8295 23 6 7.5773 6.0941 -1.4388 24 6 4.0561 2.5169 -0.0005 25 6 3.4312 1.2847 0.0001 26 7 4.2390 0.0446 0.0007 27 8 5.4552 0.1100 0.0001 28 8 3.6876 -1.0414 0.0017 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2129 2.3203 -0.0100 33 1 1.3341 4.5113 -0.0006 34 1 3.3584 5.7463 0.5127 35 1 4.9444 4.9382 0.5125 36 1 2.2064 6.8937 -4.1360 37 1 5.0458 6.4794 -3.5945 38 1 6.0729 7.7541 -2.8955 39 1 5.5408 4.2645 -3.3574 40 1 7.0728 3.7139 -2.6376 41 1 5.7566 4.2975 -1.5909 42 1 8.0416 6.9219 -3.8968 43 1 8.4711 5.2009 -3.7507 44 1 7.0607 5.6870 -4.7221 45 1 6.9414 6.0102 -0.5575 46 1 8.4021 5.3859 -1.3601 47 1 7.9731 7.1075 -1.5062 48 1 5.1345 2.5750 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223651271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:28 Heat of formation + Delta-G solvation = 52.885921 kcal Electronic energy + Delta-G solvation = -31468.134446 eV Core-core repulsion = 27225.288137 eV Total energy + Delta-G solvation = -4242.846308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.180 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.29177 -42.96825 -41.32626 -39.42084 -38.08631 -37.18480 -34.69486 -33.22632 -32.52315 -31.23578 -30.38745 -30.21506 -28.88008 -27.74400 -27.42073 -26.46739 -24.93295 -23.63066 -22.65571 -22.57315 -20.16662 -19.44829 -19.04969 -18.86380 -18.66121 -18.32105 -18.25400 -17.98464 -17.53829 -16.98056 -16.90028 -16.09450 -16.05183 -15.89069 -15.54712 -15.04801 -14.91605 -14.80170 -14.38405 -14.19508 -14.04254 -14.01508 -13.89659 -13.75481 -13.54783 -13.38948 -13.19475 -12.83041 -12.63652 -12.52840 -12.27714 -12.24913 -12.20236 -12.16918 -11.82419 -11.77053 -11.40482 -11.15955 -10.68553 -10.20634 -9.93345 -9.66705 -7.77287 -5.98262 -0.97794 -0.14563 0.33521 0.49700 0.59986 1.82611 2.04309 2.12773 2.19738 2.23234 2.32876 2.34730 2.39142 2.95399 3.01994 3.14709 3.20489 3.26350 3.41055 3.44431 3.52219 3.64401 3.68782 3.69697 3.74460 3.75698 3.77264 3.81631 3.84480 4.00953 4.04760 4.14896 4.17869 4.25668 4.28529 4.41084 4.45096 4.49231 4.67761 4.72317 4.81983 5.16092 5.18764 5.20373 5.53349 5.90671 6.15852 6.22734 6.56561 6.92506 7.18281 7.85770 9.25199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.283 6.283 3 C 0.198 3.802 4 C -0.213 4.213 5 C 0.004 3.996 6 C -0.114 4.114 7 C 0.109 3.891 8 O -0.369 6.369 9 C 0.199 3.801 10 H 0.034 0.966 11 C -0.567 4.567 12 H 0.073 0.927 13 C 0.093 3.907 14 N -0.860 5.860 15 Si 0.898 3.102 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.268 1.268 19 C -0.003 4.003 20 N -0.271 5.271 21 C -0.040 4.040 22 C -0.041 4.041 23 C -0.046 4.046 24 C -0.013 4.013 25 C -0.085 4.085 26 N 0.038 4.962 27 O -0.185 6.185 28 O -0.138 6.138 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.276 0.724 37 H 0.156 0.844 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -0.394 -0.242 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.193 6.193 3 C 0.148 3.852 4 C -0.232 4.232 5 C -0.014 4.014 6 C -0.116 4.116 7 C 0.032 3.968 8 O -0.290 6.290 9 C 0.143 3.857 10 H 0.052 0.948 11 C -0.604 4.604 12 H 0.091 0.909 13 C -0.117 4.117 14 N -0.494 5.494 15 Si 0.724 3.276 16 H -0.198 1.198 17 H -0.204 1.204 18 H -0.192 1.192 19 C -0.122 4.122 20 N 0.070 4.930 21 C -0.181 4.181 22 C -0.183 4.183 23 C -0.188 4.188 24 C -0.032 4.032 25 C -0.170 4.170 26 N 0.556 4.444 27 O -0.394 6.394 28 O -0.359 6.359 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.082 0.918 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.174 0.826 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.116 0.884 41 H 0.148 0.852 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.128 0.872 47 H 0.133 0.867 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.754 -0.169 -0.587 9.774 hybrid contribution -0.882 0.672 -0.007 1.108 sum 8.873 0.502 -0.595 8.907 Atomic orbital electron populations 1.23357 0.76760 1.05500 1.02045 1.86415 1.22631 1.24369 1.85859 1.18733 0.89504 0.86585 0.90348 1.21394 1.01294 0.90893 1.09608 1.21419 0.94244 0.98023 0.87764 1.19611 0.93488 0.94160 1.04311 1.21002 0.97933 0.90917 0.86936 1.88129 1.80851 1.37228 1.22779 1.19971 0.92017 0.84282 0.89405 0.94816 1.21249 1.14184 1.11421 1.13570 0.90880 1.24987 0.97047 0.95320 0.94298 1.69652 1.35277 1.31317 1.13170 0.86445 0.80627 0.81205 0.79361 1.19796 1.20387 1.19215 1.24932 0.85640 0.92402 1.09179 1.46375 1.16076 1.16894 1.13610 1.24306 1.02981 0.79664 1.11141 1.23996 0.97523 1.07740 0.88997 1.24052 0.98922 1.06758 0.89069 1.20685 1.01463 0.88521 0.92514 1.20424 0.88180 0.85686 1.22699 1.43308 1.01045 1.02451 0.97620 1.94497 0.95822 1.93933 1.55123 1.94613 1.74291 1.14717 1.52271 0.91713 0.86873 0.91772 0.82951 0.83254 0.91071 0.93770 0.91411 0.82631 0.86522 0.86291 0.88386 0.85164 0.86915 0.87259 0.86605 0.86390 0.87220 0.86717 0.82975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.03 9.81 101.05 0.99 0.96 16 2 O -0.28 -0.64 8.51 -41.54 -0.35 -1.00 16 3 C 0.20 0.37 6.67 -39.22 -0.26 0.11 16 4 C -0.21 0.04 9.04 -39.43 -0.36 -0.31 16 5 C 0.00 0.00 9.69 -39.61 -0.38 -0.38 16 6 C -0.11 0.06 5.51 -104.60 -0.58 -0.52 16 7 C 0.11 -0.13 5.18 36.01 0.19 0.06 16 8 O -0.37 -0.04 6.44 -35.23 -0.23 -0.26 16 9 C 0.20 -0.07 1.85 -27.88 -0.05 -0.12 16 10 H 0.03 -0.09 5.49 -51.93 -0.28 -0.38 16 11 C -0.57 -3.17 8.89 -34.44 -0.31 -3.47 16 12 H 0.07 0.51 7.81 -52.49 -0.41 0.10 16 13 C 0.09 0.71 5.24 -17.82 -0.09 0.61 16 14 N -0.86 -6.63 10.95 55.43 0.61 -6.02 16 15 Si 0.90 7.22 29.54 -169.99 -5.02 2.20 16 16 H -0.27 -2.37 7.11 56.52 0.40 -1.97 16 17 H -0.28 -2.61 7.11 56.52 0.40 -2.20 16 18 H -0.27 -2.36 7.11 56.52 0.40 -1.96 16 19 C 0.00 0.01 3.53 -3.83 -0.01 0.00 16 20 N -0.27 2.65 0.05 -395.63 -0.02 2.63 16 21 C -0.04 0.34 7.17 60.06 0.43 0.77 16 22 C -0.04 0.49 8.00 60.06 0.48 0.97 16 23 C -0.05 0.53 7.54 60.06 0.45 0.98 16 24 C -0.01 0.00 9.20 -39.61 -0.36 -0.36 16 25 C -0.09 -0.21 6.86 -79.81 -0.55 -0.76 16 26 N 0.04 0.19 4.45 34.03 0.15 0.34 16 27 O -0.19 -0.89 18.45 -29.46 -0.54 -1.44 16 28 O -0.14 -0.93 17.24 -36.49 -0.63 -1.56 16 29 H 0.06 -0.19 7.65 -51.93 -0.40 -0.59 16 30 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 31 H 0.06 -0.21 7.67 -51.93 -0.40 -0.61 16 32 H 0.15 -0.38 6.30 -52.49 -0.33 -0.71 16 33 H 0.15 -0.11 8.06 -52.48 -0.42 -0.53 16 34 H 0.07 0.03 8.08 -51.93 -0.42 -0.39 16 35 H 0.04 -0.18 8.02 -51.93 -0.42 -0.60 16 36 H 0.28 2.38 8.31 -40.82 -0.34 2.04 16 37 H 0.16 -0.15 6.12 -51.93 -0.32 -0.46 16 38 H 0.12 -0.56 8.09 -51.93 -0.42 -0.98 16 39 H 0.12 -0.76 7.94 -51.93 -0.41 -1.18 16 40 H 0.10 -1.07 8.01 -51.92 -0.42 -1.49 16 41 H 0.13 -0.89 5.04 -51.93 -0.26 -1.16 16 42 H 0.11 -1.43 8.12 -51.93 -0.42 -1.85 16 43 H 0.11 -1.50 8.08 -51.92 -0.42 -1.92 16 44 H 0.12 -1.30 8.14 -51.93 -0.42 -1.73 16 45 H 0.12 -1.21 5.86 -51.93 -0.30 -1.51 16 46 H 0.11 -1.48 8.14 -51.93 -0.42 -1.90 16 47 H 0.11 -1.40 8.14 -51.93 -0.42 -1.82 16 48 H 0.15 -0.42 7.61 -52.49 -0.40 -0.82 16 LS Contribution 385.96 15.07 5.82 5.82 Total: 0.00 -18.24 385.96 -7.91 -26.15 By element: Atomic # 1 Polarization: -18.12 SS G_CDS: -7.28 Total: -25.40 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.41 Total: -1.47 kcal Atomic # 7 Polarization: -3.79 SS G_CDS: 0.74 Total: -3.05 kcal Atomic # 8 Polarization: -2.50 SS G_CDS: -1.75 Total: -4.25 kcal Atomic # 14 Polarization: 7.22 SS G_CDS: -5.02 Total: 2.20 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -18.24 -7.91 -26.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223651271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.040 kcal (2) G-P(sol) polarization free energy of solvation -18.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds