Wall clock time and date at job start Sat Apr 11 2020 05:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00489 * 2 1 4 4 C 1.38758 * 120.05226 * 359.72146 * 3 2 1 5 5 C 1.38123 * 119.94152 * 179.74424 * 4 3 2 6 6 C 1.38287 * 120.05661 * 0.53650 * 5 4 3 7 7 C 1.50703 * 119.94493 * 179.71747 * 6 5 4 8 8 O 1.42891 * 109.47109 * 270.02060 * 7 6 5 9 9 C 1.42905 * 114.00170 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.46502 * 30.00323 * 9 8 7 11 11 C 1.50700 * 109.47263 * 270.00356 * 9 8 7 12 12 H 1.07998 * 120.00150 * 119.99009 * 11 9 8 13 13 C 1.37878 * 119.99669 * 299.99801 * 11 9 8 14 14 N 1.31519 * 120.00131 * 359.97438 * 13 11 9 15 15 Si 1.86797 * 119.99896 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47045 * 89.99826 * 15 13 11 17 17 H 1.48498 * 109.47489 * 209.99881 * 15 13 11 18 18 H 1.48500 * 109.47028 * 329.99915 * 15 13 11 19 19 C 1.52997 * 109.47301 * 149.99727 * 9 8 7 20 20 N 1.46900 * 109.47470 * 293.29212 * 19 9 8 21 21 C 1.46896 * 109.46750 * 64.51582 * 20 19 9 22 22 C 1.46895 * 109.46955 * 184.51264 * 20 19 9 23 23 C 1.46896 * 109.47026 * 304.51647 * 20 19 9 24 24 C 1.38247 * 120.10830 * 359.74040 * 6 5 4 25 25 C 1.38163 * 120.05851 * 359.97438 * 24 6 5 26 26 N 1.48004 * 120.02650 * 180.02562 * 25 24 6 27 27 O 1.21791 * 120.00330 * 359.97169 * 26 25 24 28 28 O 1.21801 * 119.99502 * 179.97438 * 26 25 24 29 29 H 1.08997 * 109.47303 * 60.00082 * 1 2 3 30 30 H 1.09005 * 109.47354 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47046 * 299.99933 * 1 2 3 32 32 H 1.07998 * 120.02703 * 0.02562 * 4 3 2 33 33 H 1.08005 * 119.96973 * 180.27215 * 5 4 3 34 34 H 1.09000 * 109.46649 * 30.02091 * 7 6 5 35 35 H 1.09000 * 109.46871 * 150.01871 * 7 6 5 36 36 H 0.96998 * 119.99710 * 179.97438 * 14 13 11 37 37 H 1.09005 * 109.47074 * 53.29334 * 19 9 8 38 38 H 1.09000 * 109.47163 * 173.29032 * 19 9 8 39 39 H 1.09000 * 109.47773 * 50.77030 * 21 20 19 40 40 H 1.09008 * 109.47019 * 170.76533 * 21 20 19 41 41 H 1.09003 * 109.47577 * 290.76235 * 21 20 19 42 42 H 1.09000 * 109.46969 * 60.00500 * 22 20 19 43 43 H 1.09009 * 109.46905 * 179.97438 * 22 20 19 44 44 H 1.08991 * 109.47593 * 300.00050 * 22 20 19 45 45 H 1.08996 * 109.47433 * 59.99599 * 23 20 19 46 46 H 1.08996 * 109.46813 * 179.97438 * 23 20 19 47 47 H 1.09005 * 109.46890 * 299.99768 * 23 20 19 48 48 H 1.08000 * 119.96721 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0058 5 6 1.9210 3.6047 -0.0005 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0011 8 8 4.2021 5.4424 -1.3485 9 6 4.8484 6.7119 -1.4619 10 1 5.5027 6.8644 -0.6036 11 6 3.8094 7.8028 -1.5017 12 1 3.8045 8.5718 -0.7435 13 6 2.8649 7.8189 -2.5061 14 7 2.8711 6.8826 -3.4296 15 14 1.5766 9.1706 -2.5550 16 1 2.0869 10.3120 -3.3563 17 1 0.3331 8.6471 -3.1754 18 1 1.2856 9.6273 -1.1723 19 6 5.6768 6.7495 -2.7477 20 7 6.7888 5.7954 -2.6418 21 6 6.2553 4.4298 -2.5511 22 6 7.6457 5.9085 -3.8295 23 6 7.5773 6.0941 -1.4388 24 6 4.0561 2.5169 -0.0005 25 6 3.4312 1.2847 0.0001 26 7 4.2390 0.0446 0.0007 27 8 5.4552 0.1100 0.0001 28 8 3.6876 -1.0414 0.0017 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2129 2.3203 -0.0100 33 1 1.3341 4.5113 -0.0006 34 1 3.3584 5.7463 0.5127 35 1 4.9444 4.9382 0.5125 36 1 2.2064 6.8937 -4.1360 37 1 5.0458 6.4794 -3.5945 38 1 6.0729 7.7541 -2.8955 39 1 5.5408 4.2645 -3.3574 40 1 7.0728 3.7139 -2.6376 41 1 5.7566 4.2975 -1.5909 42 1 8.0416 6.9219 -3.8968 43 1 8.4711 5.2009 -3.7507 44 1 7.0607 5.6870 -4.7221 45 1 6.9414 6.0102 -0.5575 46 1 8.4021 5.3859 -1.3601 47 1 7.9731 7.1075 -1.5062 48 1 5.1345 2.5750 -0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223651271.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:26 Heat of formation + Delta-G solvation = 49.993013 kcal Electronic energy + Delta-G solvation = -31468.259892 eV Core-core repulsion = 27225.288137 eV Total energy + Delta-G solvation = -4242.971754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.180 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.22503 -42.60529 -41.38552 -39.39126 -38.04854 -37.50279 -35.00016 -33.30850 -32.55101 -31.08347 -29.49253 -29.41070 -28.76473 -27.74051 -27.61418 -26.42197 -24.54982 -23.69714 -22.63172 -22.40966 -20.28011 -19.71825 -18.95861 -18.89201 -18.59172 -18.14830 -17.80582 -17.52381 -17.39538 -16.94953 -16.84660 -16.44080 -15.96467 -15.87097 -15.50566 -14.93778 -14.52748 -14.24659 -14.16574 -13.84582 -13.66089 -13.33254 -13.23675 -13.18290 -13.13974 -13.12553 -12.94746 -12.87817 -12.81850 -12.71470 -12.63173 -12.57293 -12.40798 -12.23951 -12.18159 -11.99535 -11.83577 -11.17259 -10.77369 -10.71438 -9.97967 -9.67365 -8.30203 -6.45227 -1.16760 -0.12519 0.29760 0.41244 1.08740 1.34305 1.46454 1.53320 1.87954 2.12072 2.32874 2.90338 2.98143 3.14273 3.19472 3.23630 3.39450 3.48550 3.76028 3.83299 3.86699 4.05365 4.16577 4.21038 4.25874 4.26382 4.31956 4.37829 4.41265 4.47852 4.52148 4.54949 4.57418 4.64458 4.68809 4.76762 4.80831 4.81917 4.85660 4.87168 5.04528 5.13893 5.23750 5.34254 5.37816 5.65069 5.90928 5.96074 6.42209 6.57184 6.86147 7.37106 8.68115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.308 6.308 3 C 0.186 3.814 4 C -0.210 4.210 5 C -0.002 4.002 6 C -0.112 4.112 7 C 0.106 3.894 8 O -0.376 6.376 9 C 0.196 3.804 10 H 0.065 0.935 11 C -0.565 4.565 12 H 0.054 0.946 13 C 0.077 3.923 14 N -0.866 5.866 15 Si 0.908 3.092 16 H -0.283 1.283 17 H -0.300 1.300 18 H -0.280 1.280 19 C 0.014 3.986 20 N -0.258 5.258 21 C -0.041 4.041 22 C -0.043 4.043 23 C -0.053 4.053 24 C 0.001 3.999 25 C -0.106 4.106 26 N 0.041 4.959 27 O -0.168 6.168 28 O -0.199 6.199 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.153 0.847 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.263 0.737 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.140 0.860 47 H 0.126 0.874 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.018 -0.266 0.300 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.219 6.219 3 C 0.136 3.864 4 C -0.229 4.229 5 C -0.020 4.020 6 C -0.113 4.113 7 C 0.030 3.970 8 O -0.296 6.296 9 C 0.139 3.861 10 H 0.083 0.917 11 C -0.603 4.603 12 H 0.073 0.927 13 C -0.130 4.130 14 N -0.502 5.502 15 Si 0.738 3.262 16 H -0.209 1.209 17 H -0.227 1.227 18 H -0.206 1.206 19 C -0.107 4.107 20 N 0.085 4.915 21 C -0.182 4.182 22 C -0.184 4.184 23 C -0.194 4.194 24 C -0.018 4.018 25 C -0.191 4.191 26 N 0.553 4.447 27 O -0.385 6.385 28 O -0.406 6.406 29 H 0.093 0.907 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.156 0.844 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.159 0.841 47 H 0.144 0.856 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 12.525 -0.120 -0.037 12.525 hybrid contribution -1.724 0.766 -0.100 1.889 sum 10.801 0.646 -0.137 10.821 Atomic orbital electron populations 1.23614 0.75028 1.06561 1.03268 1.86395 1.24610 1.25002 1.85869 1.18991 0.89676 0.87072 0.90651 1.21580 1.02231 0.90109 1.08987 1.21654 0.94892 0.98193 0.87259 1.19711 0.93315 0.94496 1.03808 1.21113 0.99492 0.89807 0.86604 1.88137 1.81268 1.36704 1.23491 1.19989 0.91206 0.82256 0.92609 0.91704 1.21576 1.15074 1.12146 1.11528 0.92738 1.25043 0.97436 0.95079 0.95422 1.69736 1.35221 1.31700 1.13506 0.86381 0.80459 0.81527 0.77869 1.20901 1.22716 1.20573 1.24143 0.87066 0.94089 1.05362 1.45981 1.14912 1.15011 1.15615 1.24259 1.03891 0.80787 1.09284 1.24168 0.97418 1.09411 0.87366 1.24284 0.99167 1.08583 0.87357 1.20928 1.02793 0.87170 0.90934 1.20719 0.88442 0.85209 1.24718 1.43619 1.01123 1.03023 0.96932 1.94438 0.96377 1.94077 1.53558 1.94617 1.74429 1.16004 1.55566 0.90651 0.86033 0.90312 0.81001 0.82912 0.92793 0.89878 0.92755 0.85787 0.85676 0.88808 0.85002 0.86468 0.85781 0.84359 0.87717 0.87358 0.84127 0.85557 0.80213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.03 9.81 113.37 1.11 1.08 16 2 O -0.31 -1.82 8.51 -71.23 -0.61 -2.43 16 3 C 0.19 0.83 6.67 22.51 0.15 0.98 16 4 C -0.21 0.06 9.04 22.37 0.20 0.27 16 5 C 0.00 0.00 9.69 22.25 0.22 0.22 16 6 C -0.11 0.22 5.51 -19.85 -0.11 0.11 16 7 C 0.11 -0.40 5.18 71.24 0.37 -0.04 16 8 O -0.38 0.23 6.44 -148.98 -0.96 -0.73 16 9 C 0.20 -0.33 1.85 29.85 0.06 -0.28 16 10 H 0.07 -0.52 5.49 -2.39 -0.01 -0.53 16 11 C -0.57 -6.57 8.89 25.60 0.23 -6.34 16 12 H 0.05 0.80 7.81 -2.91 -0.02 0.78 16 13 C 0.08 1.28 5.24 84.65 0.44 1.73 16 14 N -0.87 -14.75 10.95 21.45 0.23 -14.52 16 15 Si 0.91 16.80 29.54 68.60 2.03 18.83 16 16 H -0.28 -5.55 7.11 99.48 0.71 -4.85 16 17 H -0.30 -6.53 7.11 99.48 0.71 -5.83 16 18 H -0.28 -5.60 7.11 99.48 0.71 -4.90 16 19 C 0.01 -0.13 3.53 86.30 0.30 0.17 16 20 N -0.26 5.64 0.05 ******* -0.07 5.58 16 21 C -0.04 0.78 7.17 127.69 0.92 1.69 16 22 C -0.04 1.14 8.00 127.69 1.02 2.16 16 23 C -0.05 1.41 7.54 127.69 0.96 2.37 16 24 C 0.00 0.00 9.20 22.25 0.20 0.20 16 25 C -0.11 -0.55 6.86 36.47 0.25 -0.30 16 26 N 0.04 0.44 4.45 -46.25 -0.21 0.24 16 27 O -0.17 -1.55 18.45 18.90 0.35 -1.20 16 28 O -0.20 -3.12 17.24 25.61 0.44 -2.68 16 29 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 30 H 0.12 -0.68 8.14 -2.38 -0.02 -0.70 16 31 H 0.08 -0.52 7.67 -2.38 -0.02 -0.54 16 32 H 0.17 -0.90 6.30 -2.91 -0.02 -0.92 16 33 H 0.15 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.05 0.01 8.08 -2.39 -0.02 -0.01 16 35 H 0.08 -0.95 8.02 -2.39 -0.02 -0.97 16 36 H 0.26 5.14 8.31 -92.71 -0.77 4.37 16 37 H 0.12 -0.18 6.12 -2.38 -0.01 -0.19 16 38 H 0.13 -1.37 8.09 -2.39 -0.02 -1.38 16 39 H 0.09 -1.22 7.94 -2.39 -0.02 -1.24 16 40 H 0.13 -3.37 8.01 -2.38 -0.02 -3.39 16 41 H 0.12 -1.88 5.04 -2.39 -0.01 -1.89 16 42 H 0.12 -3.50 8.12 -2.39 -0.02 -3.52 16 43 H 0.14 -4.37 8.08 -2.38 -0.02 -4.39 16 44 H 0.10 -2.46 8.14 -2.39 -0.02 -2.48 16 45 H 0.11 -2.60 5.86 -2.39 -0.01 -2.62 16 46 H 0.14 -4.49 8.14 -2.39 -0.02 -4.51 16 47 H 0.13 -3.56 8.14 -2.38 -0.02 -3.58 16 48 H 0.18 -1.48 7.61 -2.91 -0.02 -1.50 16 Total: 0.00 -46.83 385.96 8.50 -38.33 By element: Atomic # 1 Polarization: -46.41 SS G_CDS: 0.96 Total: -45.45 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 6.33 Total: 4.03 kcal Atomic # 7 Polarization: -8.67 SS G_CDS: -0.04 Total: -8.71 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.78 Total: -7.04 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: 2.03 Total: 18.83 kcal Total: -46.83 8.50 -38.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223651271.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.328 kcal (2) G-P(sol) polarization free energy of solvation -46.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds