Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 109.47676 * 2 1 4 4 C 1.46904 * 109.47090 * 239.99735 * 2 1 3 5 5 C 1.46897 * 109.46877 * 120.00321 * 2 1 3 6 6 C 1.52996 * 109.47418 * 64.44052 * 5 2 1 7 7 H 1.08995 * 109.47016 * 53.21721 * 6 5 2 8 8 C 1.50703 * 109.47457 * 173.21521 * 6 5 2 9 9 H 1.07998 * 120.00083 * 240.00328 * 8 6 5 10 10 C 1.37880 * 119.99659 * 59.99824 * 8 6 5 11 11 N 1.31513 * 120.00215 * 359.97438 * 10 8 6 12 12 Si 1.86807 * 119.99849 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46999 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.46986 * 119.99794 * 12 10 8 15 15 H 1.48502 * 109.46639 * 240.00213 * 12 10 8 16 16 O 1.42906 * 109.46966 * 293.21551 * 6 5 2 17 17 C 1.42902 * 113.99599 * 150.00050 * 16 6 5 18 18 C 1.53002 * 109.46597 * 179.97438 * 17 16 6 19 19 O 1.42901 * 109.47046 * 65.00015 * 18 17 16 20 20 C 1.35904 * 116.99964 * 179.97438 * 19 18 17 21 21 C 1.38729 * 120.05628 * 179.97438 * 20 19 18 22 22 C 1.38143 * 119.94285 * 180.02562 * 21 20 19 23 23 C 1.38264 * 120.05649 * 0.02562 * 22 21 20 24 24 N 1.48013 * 119.94430 * 179.97438 * 23 22 21 25 25 O 1.21801 * 119.99656 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99556 * 179.72382 * 24 23 22 27 27 C 1.38262 * 120.11479 * 0.24821 * 23 22 21 28 28 C 1.38154 * 120.05159 * 359.45789 * 27 23 22 29 29 H 1.08994 * 109.47072 * 290.71788 * 1 2 3 30 30 H 1.09004 * 109.46881 * 50.71391 * 1 2 3 31 31 H 1.08994 * 109.47163 * 170.71657 * 1 2 3 32 32 H 1.08998 * 109.47653 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47063 * 300.00657 * 3 2 1 34 34 H 1.09006 * 109.46673 * 59.99763 * 3 2 1 35 35 H 1.08998 * 109.47513 * 300.00298 * 4 2 1 36 36 H 1.09007 * 109.46941 * 60.00502 * 4 2 1 37 37 H 1.08998 * 109.47016 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.47421 * 304.43497 * 5 2 1 39 39 H 1.09004 * 109.47329 * 184.44170 * 5 2 1 40 40 H 0.96998 * 120.00142 * 179.97438 * 11 10 8 41 41 H 1.08999 * 109.47270 * 60.00529 * 17 16 6 42 42 H 1.08999 * 109.47100 * 299.99775 * 17 16 6 43 43 H 1.09004 * 109.47173 * 304.99919 * 18 17 16 44 44 H 1.08998 * 109.47285 * 185.00007 * 18 17 16 45 45 H 1.07995 * 120.03064 * 359.97438 * 21 20 19 46 46 H 1.07999 * 119.97165 * 179.97438 * 22 21 20 47 47 H 1.08000 * 119.97613 * 179.72614 * 27 23 22 48 48 H 1.07998 * 120.02821 * 180.25547 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9588 1.3849 0.0000 4 6 1.9587 -0.6926 -1.1994 5 6 1.9586 -0.6926 1.1994 6 6 1.5418 -2.1637 1.1448 7 1 1.8661 -2.5982 0.1993 8 6 2.1824 -2.9100 2.2866 9 1 2.8476 -3.7368 2.0857 10 6 1.9192 -2.5373 3.5877 11 7 1.1096 -1.5302 3.8323 12 14 2.7138 -3.4621 5.0030 13 1 3.5762 -4.5446 4.4649 14 1 3.5389 -2.5241 5.8059 15 1 1.6573 -4.0530 5.8633 16 8 0.1200 -2.2602 1.2507 17 6 -0.4382 -3.3869 0.5717 18 6 -1.9576 -3.3896 0.7521 19 8 -2.5160 -2.2439 0.1058 20 6 -3.8653 -2.0950 0.1714 21 6 -4.4743 -1.0053 -0.4337 22 6 -5.8459 -0.8560 -0.3651 23 6 -6.6116 -1.7912 0.3062 24 7 -8.0810 -1.6285 0.3786 25 8 -8.6146 -0.6715 -0.1534 26 8 -8.7569 -2.4545 0.9654 27 6 -6.0065 -2.8752 0.9149 28 6 -4.6358 -3.0323 0.8440 29 1 -0.3633 0.3635 0.9612 30 1 -0.3633 0.6507 -0.7954 31 1 -0.3633 -1.0141 -0.1658 32 1 3.0488 1.3849 0.0005 33 1 1.5954 1.8988 -0.8899 34 1 1.5954 1.8988 0.8900 35 1 1.5953 -1.7202 -1.1995 36 1 1.5954 -0.1787 -2.0895 37 1 3.0486 -0.6930 -1.1992 38 1 1.5318 -0.2267 2.0876 39 1 3.0457 -0.6242 1.2402 40 1 0.9242 -1.2683 4.7476 41 1 -0.0218 -4.3045 0.9873 42 1 -0.1981 -3.3270 -0.4898 43 1 -2.1973 -3.3600 1.8150 44 1 -2.3743 -4.2949 0.3107 45 1 -3.8765 -0.2738 -0.9571 46 1 -6.3204 -0.0075 -0.8356 47 1 -6.6064 -3.6021 1.4424 48 1 -4.1640 -3.8814 1.3161 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224776835.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = 49.152835 kcal Electronic energy + Delta-G solvation = -30649.161974 eV Core-core repulsion = 26406.153787 eV Total energy + Delta-G solvation = -4243.008187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.29225 -43.00568 -41.53591 -39.17280 -38.21638 -37.37179 -34.70248 -32.91927 -32.44784 -31.74007 -30.56050 -30.29067 -30.09497 -27.72307 -27.05914 -25.19678 -24.90650 -23.61699 -22.79726 -22.66743 -20.35223 -19.64410 -19.48013 -19.08333 -18.65090 -18.34573 -18.31706 -18.11222 -17.37524 -17.20877 -16.65683 -16.24346 -15.98668 -15.78965 -15.41418 -15.08152 -14.99214 -14.82084 -14.65354 -14.33900 -14.20394 -14.07895 -14.00649 -13.89956 -13.72781 -13.49209 -13.31219 -12.82258 -12.54271 -12.47242 -12.35628 -12.30886 -12.20309 -12.06846 -12.04170 -11.94697 -11.36952 -11.16230 -10.66378 -10.21554 -9.94409 -9.94191 -7.78030 -5.99360 -1.07150 -0.25960 0.32654 0.40660 0.54459 1.69667 2.05167 2.12505 2.20986 2.23837 2.28429 2.34100 2.37809 2.82960 2.97693 3.11658 3.17597 3.19637 3.29447 3.39121 3.48460 3.51312 3.64181 3.67072 3.67829 3.70902 3.74372 3.82601 3.86786 3.93425 4.01649 4.09673 4.16535 4.26670 4.32762 4.34358 4.43746 4.55639 4.61439 4.68597 4.72817 4.74887 4.98800 5.17992 5.50081 5.85193 6.14914 6.22085 6.54683 6.79756 7.17580 7.85376 9.24493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.271 5.271 3 C -0.041 4.041 4 C -0.045 4.045 5 C -0.003 4.003 6 C 0.200 3.800 7 H 0.033 0.967 8 C -0.569 4.569 9 H 0.073 0.927 10 C 0.093 3.907 11 N -0.861 5.861 12 Si 0.898 3.102 13 H -0.268 1.268 14 H -0.276 1.276 15 H -0.275 1.275 16 O -0.370 6.370 17 C 0.068 3.932 18 C 0.054 3.946 19 O -0.299 6.299 20 C 0.191 3.809 21 C -0.156 4.156 22 C -0.014 4.014 23 C -0.088 4.088 24 N 0.034 4.966 25 O -0.165 6.165 26 O -0.164 6.164 27 C -0.009 4.009 28 C -0.210 4.210 29 H 0.117 0.883 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.113 0.887 38 H 0.156 0.844 39 H 0.116 0.884 40 H 0.275 0.725 41 H 0.081 0.919 42 H 0.042 0.958 43 H 0.083 0.917 44 H 0.079 0.921 45 H 0.152 0.848 46 H 0.159 0.841 47 H 0.157 0.843 48 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 6.981 -12.996 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 N 0.070 4.930 3 C -0.183 4.183 4 C -0.187 4.187 5 C -0.122 4.122 6 C 0.144 3.856 7 H 0.050 0.950 8 C -0.606 4.606 9 H 0.091 0.909 10 C -0.117 4.117 11 N -0.495 5.495 12 Si 0.724 3.276 13 H -0.192 1.192 14 H -0.201 1.201 15 H -0.201 1.201 16 O -0.290 6.290 17 C -0.009 4.009 18 C -0.020 4.020 19 O -0.211 6.211 20 C 0.143 3.857 21 C -0.175 4.175 22 C -0.033 4.033 23 C -0.172 4.172 24 N 0.551 4.449 25 O -0.379 6.379 26 O -0.379 6.379 27 C -0.028 4.028 28 C -0.229 4.229 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.174 0.826 39 H 0.134 0.866 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.097 0.903 45 H 0.170 0.830 46 H 0.177 0.823 47 H 0.174 0.826 48 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.978 7.276 -12.854 16.336 hybrid contribution 0.067 -0.798 1.021 1.298 sum 7.045 6.478 -11.833 15.219 Atomic orbital electron populations 1.24314 0.76057 1.10131 1.07411 1.46387 1.15805 1.14268 1.16535 1.23991 1.04832 0.81430 1.08020 1.24027 1.04870 1.02437 0.87330 1.24922 1.02962 0.98012 0.86256 1.19954 0.80208 0.88491 0.96929 0.94967 1.21292 1.30992 1.18178 0.90140 0.90867 1.24999 0.92940 0.94252 0.99514 1.69651 1.32082 1.25661 1.22067 0.86381 0.79725 0.80233 0.81214 1.19170 1.20128 1.20054 1.88113 1.22686 1.43472 1.74687 1.22281 0.89638 0.93320 0.95651 1.23226 0.93836 0.86209 0.98740 1.86069 1.16989 1.46578 1.71488 1.19340 0.83377 0.92565 0.90385 1.20361 0.93104 0.98973 1.05040 1.20855 0.92741 0.96874 0.92863 1.20998 0.80067 1.03053 1.13072 1.43531 1.03407 0.99663 0.98259 1.94548 1.74479 1.22438 1.46476 1.94561 1.62928 1.38065 1.42377 1.20882 0.94753 0.94374 0.92778 1.21347 0.93264 1.02496 1.05794 0.86443 0.88844 0.84318 0.86962 0.87351 0.86611 0.86441 0.87371 0.86801 0.82643 0.86607 0.91441 0.90121 0.93947 0.89828 0.90274 0.82993 0.82303 0.82582 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.34 7.16 60.06 0.43 0.77 16 2 N -0.27 2.71 0.05 -395.63 -0.02 2.69 16 3 C -0.04 0.50 8.00 60.06 0.48 0.98 16 4 C -0.04 0.52 7.54 60.07 0.45 0.97 16 5 C 0.00 0.01 3.52 -3.83 -0.01 0.00 16 6 C 0.20 -0.08 1.85 -27.88 -0.05 -0.13 16 7 H 0.03 -0.09 5.48 -51.93 -0.28 -0.37 16 8 C -0.57 -3.25 8.89 -34.44 -0.31 -3.56 16 9 H 0.07 0.52 7.81 -52.49 -0.41 0.11 16 10 C 0.09 0.72 5.25 -17.82 -0.09 0.63 16 11 N -0.86 -6.76 10.95 55.43 0.61 -6.15 16 12 Si 0.90 7.43 29.54 -169.99 -5.02 2.40 16 13 H -0.27 -2.37 7.11 56.52 0.40 -1.96 16 14 H -0.28 -2.49 7.11 56.52 0.40 -2.09 16 15 H -0.28 -2.66 7.11 56.52 0.40 -2.26 16 16 O -0.37 0.05 6.43 -40.09 -0.26 -0.20 16 17 C 0.07 -0.14 5.48 37.16 0.20 0.07 16 18 C 0.05 -0.15 5.12 37.16 0.19 0.04 16 19 O -0.30 0.88 9.20 -24.30 -0.22 0.66 16 20 C 0.19 -0.43 6.69 -39.22 -0.26 -0.69 16 21 C -0.16 0.46 9.99 -39.43 -0.39 0.07 16 22 C -0.01 0.02 9.55 -39.61 -0.38 -0.36 16 23 C -0.09 -0.11 6.85 -79.93 -0.55 -0.65 16 24 N 0.03 0.15 4.45 33.97 0.15 0.30 16 25 O -0.16 -0.86 18.44 -29.46 -0.54 -1.40 16 26 O -0.16 -0.92 18.44 -29.46 -0.54 -1.46 16 27 C -0.01 0.00 9.55 -39.60 -0.38 -0.38 16 28 C -0.21 0.39 9.04 -39.43 -0.36 0.03 16 29 H 0.12 -0.80 7.94 -51.93 -0.41 -1.21 16 30 H 0.09 -1.09 8.01 -51.93 -0.42 -1.51 16 31 H 0.14 -0.96 4.13 -51.93 -0.21 -1.18 16 32 H 0.11 -1.45 8.12 -51.93 -0.42 -1.87 16 33 H 0.11 -1.54 8.07 -51.93 -0.42 -1.96 16 34 H 0.12 -1.34 8.14 -51.93 -0.42 -1.76 16 35 H 0.12 -1.20 5.86 -51.93 -0.30 -1.50 16 36 H 0.11 -1.49 8.14 -51.93 -0.42 -1.91 16 37 H 0.11 -1.40 8.14 -51.93 -0.42 -1.82 16 38 H 0.16 -0.15 6.12 -51.93 -0.32 -0.47 16 39 H 0.12 -0.56 8.09 -51.93 -0.42 -0.98 16 40 H 0.28 2.40 8.31 -40.82 -0.34 2.06 16 41 H 0.08 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.04 -0.19 8.08 -51.93 -0.42 -0.61 16 43 H 0.08 -0.11 7.66 -51.93 -0.40 -0.50 16 44 H 0.08 -0.36 7.66 -51.93 -0.40 -0.75 16 45 H 0.15 -0.87 8.06 -52.49 -0.42 -1.29 16 46 H 0.16 -0.40 7.60 -52.49 -0.40 -0.80 16 47 H 0.16 -0.17 7.60 -52.49 -0.40 -0.57 16 48 H 0.15 -0.54 6.30 -52.49 -0.33 -0.87 16 LS Contribution 386.78 15.07 5.83 5.83 Total: 0.00 -17.81 386.78 -8.26 -26.07 By element: Atomic # 1 Polarization: -19.31 SS G_CDS: -7.21 Total: -26.53 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.02 Total: -2.21 kcal Atomic # 7 Polarization: -3.90 SS G_CDS: 0.74 Total: -3.16 kcal Atomic # 8 Polarization: -0.84 SS G_CDS: -1.57 Total: -2.41 kcal Atomic # 14 Polarization: 7.43 SS G_CDS: -5.02 Total: 2.40 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -17.81 -8.26 -26.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224776835.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.226 kcal (2) G-P(sol) polarization free energy of solvation -17.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds