Wall clock time and date at job start Sat Apr 11 2020 05:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35515 * 117.00025 * 2 1 4 4 N 1.33086 * 120.88026 * 0.02562 * 3 2 1 5 5 C 1.31763 * 120.81675 * 180.02562 * 4 3 2 6 6 N 1.31994 * 122.07712 * 359.95451 * 5 4 3 7 7 C 1.32388 * 120.28166 * 359.97438 * 6 5 4 8 8 C 1.37185 * 119.51482 * 0.11000 * 7 6 5 9 9 C 1.51226 * 120.20193 * 179.69697 * 8 7 6 10 10 C 1.53332 * 108.17636 * 69.51932 * 9 8 7 11 11 N 1.45358 * 110.76230 * 275.56667 * 10 9 8 12 12 C 1.46901 * 110.99641 * 301.11860 * 11 10 9 13 13 C 1.50698 * 109.46959 * 197.36343 * 12 11 10 14 14 C 1.37644 * 120.12797 * 260.00081 * 13 12 11 15 15 C 1.38611 * 120.24785 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50344 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.24761 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12846 * 79.72744 * 13 12 11 19 19 C 1.41396 * 120.24684 * 359.97438 * 18 13 12 20 20 H 1.08000 * 119.99396 * 331.68244 * 19 18 13 21 21 C 1.39937 * 120.00189 * 151.68070 * 19 18 13 22 22 N 1.30824 * 120.00223 * 343.88799 * 21 19 18 23 23 Si 1.86808 * 120.00110 * 163.88903 * 21 19 18 24 24 H 1.48493 * 109.46847 * 59.99857 * 23 21 19 25 25 H 1.48493 * 109.47272 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47028 * 300.00133 * 23 21 19 27 27 C 1.45336 * 116.84594 * 69.76388 * 11 10 9 28 28 C 1.51331 * 120.55524 * 180.08275 * 7 6 5 29 29 H 1.09006 * 109.46738 * 60.00158 * 1 2 3 30 30 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47426 * 300.00457 * 1 2 3 32 32 H 1.07997 * 118.95870 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.72167 * 189.18962 * 9 8 7 34 34 H 1.09000 * 109.72525 * 309.80986 * 9 8 7 35 35 H 1.09001 * 109.22176 * 155.23127 * 10 9 8 36 36 H 1.08995 * 109.21837 * 35.89267 * 10 9 8 37 37 H 1.09007 * 109.47500 * 317.36121 * 12 11 10 38 38 H 1.08997 * 109.47340 * 77.36134 * 12 11 10 39 39 H 1.08005 * 119.87216 * 359.97438 * 14 13 12 40 40 H 1.08000 * 119.74530 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.87518 * 180.02562 * 16 15 14 42 42 H 1.07998 * 120.12525 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00114 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.20248 * 50.41552 * 27 11 10 45 45 H 1.09005 * 109.19793 * 169.70786 * 27 11 10 46 46 H 1.08997 * 109.72077 * 351.23585 * 28 7 6 47 47 H 1.08998 * 109.72545 * 230.57769 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3367 2.3346 0.0005 5 6 1.9362 3.5080 0.0000 6 7 3.2511 3.6233 -0.0001 7 6 4.0160 2.5428 0.0008 8 6 3.4321 1.3014 -0.0005 9 6 4.2910 0.0567 -0.0064 10 6 4.9866 -0.0509 1.3558 11 7 6.2027 0.7451 1.3777 12 6 7.1361 0.3090 0.3306 13 6 8.5150 0.8345 0.6362 14 6 8.9854 1.9562 -0.0081 15 6 10.2535 2.4415 0.2707 16 6 11.0619 1.8051 1.2002 17 6 10.6124 0.6823 1.8564 18 6 9.3244 0.1839 1.5855 19 6 8.8495 -0.9654 2.2583 20 1 7.7899 -1.0968 2.4205 21 6 9.7524 -1.9326 2.7140 22 7 10.9788 -1.9485 2.2588 23 14 9.2065 -3.2010 3.9721 24 1 8.0801 -3.9943 3.4184 25 1 10.3413 -4.1051 4.2879 26 1 8.7644 -2.5111 5.2107 27 6 6.0420 2.1895 1.3636 28 6 5.5241 2.6678 0.0025 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.3326 4.4035 0.0000 33 1 3.6657 -0.8209 -0.1705 34 1 5.0380 0.1290 -0.7968 35 1 5.2369 -1.0939 1.5495 36 1 4.3106 0.3054 2.1330 37 1 7.1617 -0.7803 0.2972 38 1 6.8059 0.6943 -0.6341 39 1 8.3643 2.4596 -0.7343 40 1 10.6145 3.3220 -0.2400 41 1 12.0481 2.1922 1.4099 42 1 11.2439 0.1879 2.5797 43 1 11.6048 -2.6187 2.5750 44 1 5.3327 2.4788 2.1389 45 1 7.0046 2.6592 1.5661 46 1 5.8070 3.7088 -0.1535 47 1 5.9455 2.0489 -0.7896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:52 Heat of formation + Delta-G solvation = 40.560446 kcal Electronic energy + Delta-G solvation = -29859.932314 eV Core-core repulsion = 26007.923375 eV Total energy + Delta-G solvation = -3852.008938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63993 -39.11406 -38.45942 -37.06245 -33.79282 -33.57463 -33.24755 -31.17641 -30.47417 -29.37603 -28.09775 -26.95065 -25.75597 -25.03713 -24.60974 -23.24968 -21.35350 -20.93477 -20.63450 -19.05774 -18.55248 -17.93590 -17.06818 -16.40855 -15.69282 -15.54682 -15.30624 -15.00230 -14.72558 -14.61913 -14.58729 -14.30412 -13.94697 -13.36475 -13.30566 -13.15334 -12.60012 -12.51023 -12.38694 -12.16658 -11.88120 -11.59404 -11.57910 -11.34746 -11.16838 -11.08282 -11.00722 -10.79117 -10.71584 -10.52976 -10.41598 -10.31025 -10.21879 -9.44746 -9.43522 -9.27138 -9.11389 -9.07921 -7.51292 -7.29200 -7.23781 -6.68035 -4.26723 0.85713 1.04542 2.70364 2.84103 2.99622 3.11267 3.14660 3.30134 3.64644 3.89942 3.99763 4.00001 4.46677 4.64707 4.71277 4.76002 4.90783 5.00082 5.00835 5.21873 5.27918 5.33507 5.36698 5.50318 5.68195 5.71409 5.77011 5.82231 5.85495 6.08471 6.12131 6.18732 6.25935 6.32300 6.35975 6.50267 6.52242 6.58945 6.75070 6.89352 6.98251 7.17450 7.30707 7.43185 7.65059 7.74193 7.80642 7.98806 8.01933 8.12581 8.19450 8.37847 8.73142 9.00171 9.06968 10.27678 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003574 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.297493 B = 7831.980899 C = 9503.110627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C 0.359 3.641 4 N -0.582 5.582 5 C 0.320 3.680 6 N -0.533 5.533 7 C 0.207 3.793 8 C -0.196 4.196 9 C -0.109 4.109 10 C 0.079 3.921 11 N -0.544 5.544 12 C 0.126 3.874 13 C -0.191 4.191 14 C -0.087 4.087 15 C -0.244 4.244 16 C -0.107 4.107 17 C -0.161 4.161 18 C 0.133 3.867 19 C -0.450 4.450 20 H 0.089 0.911 21 C 0.075 3.925 22 N -0.800 5.800 23 Si 0.903 3.097 24 H -0.267 1.267 25 H -0.282 1.282 26 H -0.265 1.265 27 C 0.086 3.914 28 C -0.116 4.116 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.196 0.804 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.112 0.888 43 H 0.278 0.722 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.744 3.595 -3.564 16.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.200 6.200 3 C 0.173 3.827 4 N -0.312 5.312 5 C 0.032 3.968 6 N -0.252 5.252 7 C 0.064 3.936 8 C -0.201 4.201 9 C -0.150 4.150 10 C -0.049 4.049 11 N -0.265 5.265 12 C 0.001 3.999 13 C -0.193 4.193 14 C -0.106 4.106 15 C -0.263 4.263 16 C -0.126 4.126 17 C -0.181 4.181 18 C 0.130 3.870 19 C -0.479 4.479 20 H 0.107 0.893 21 C -0.142 4.142 22 N -0.425 5.425 23 Si 0.728 3.272 24 H -0.191 1.191 25 H -0.207 1.207 26 H -0.189 1.189 27 C -0.043 4.043 28 C -0.156 4.156 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.212 0.788 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.130 0.870 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.815 3.824 -3.113 16.566 hybrid contribution -0.476 -0.935 -0.242 1.077 sum -16.291 2.888 -3.355 16.882 Atomic orbital electron populations 1.22938 0.76889 1.03295 1.02567 1.86245 1.23069 1.23779 1.86912 1.19844 0.89033 0.84914 0.88884 1.68109 1.41922 0.99108 1.22044 1.24658 0.88630 0.93756 0.89729 1.68574 1.06188 1.32917 1.17480 1.21476 0.97712 0.86814 0.87590 1.20466 0.91772 0.98608 1.09261 1.21436 0.98267 0.93776 1.01489 1.21791 0.90169 0.99097 0.93849 1.59464 1.12616 1.03544 1.50896 1.20663 0.89504 0.99962 0.89813 1.19473 0.96242 1.00651 1.02983 1.20368 0.95348 0.95999 0.98860 1.20296 0.96554 1.03217 1.06253 1.20665 0.97470 0.96705 0.97743 1.21293 0.98216 0.96131 1.02416 1.17348 0.90492 0.90982 0.88172 1.19654 0.95053 1.02366 1.30874 0.89308 1.25928 0.94434 0.98545 0.95310 1.69825 1.05247 1.31849 1.35617 0.86457 0.78964 0.80044 0.81735 1.19127 1.20707 1.18949 1.21665 1.01851 0.87986 0.92802 1.21743 0.86639 1.04464 1.02762 0.92192 0.88262 0.92090 0.78758 0.89880 0.89754 0.89777 0.91858 0.90442 0.95931 0.89933 0.89884 0.89820 0.86997 0.91088 0.92039 0.88564 0.88985 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.42 101.05 1.05 1.38 16 2 O -0.30 -3.59 9.45 -18.24 -0.17 -3.76 16 3 C 0.36 4.84 7.51 -16.69 -0.13 4.72 16 4 N -0.58 -7.46 9.43 -14.61 -0.14 -7.59 16 5 C 0.32 3.85 12.27 -92.01 -1.13 2.73 16 6 N -0.53 -7.39 10.42 -10.88 -0.11 -7.51 16 7 C 0.21 2.94 5.93 -82.43 -0.49 2.45 16 8 C -0.20 -2.73 5.02 -104.43 -0.52 -3.25 16 9 C -0.11 -1.46 5.36 -27.45 -0.15 -1.61 16 10 C 0.08 1.17 5.54 -4.48 -0.02 1.15 16 11 N -0.54 -9.20 4.16 -238.27 -0.99 -10.19 16 12 C 0.13 2.31 3.32 -4.98 -0.02 2.30 16 13 C -0.19 -4.18 4.60 -103.91 -0.48 -4.66 16 14 C -0.09 -1.81 8.75 -39.66 -0.35 -2.16 16 15 C -0.24 -5.28 10.05 -39.29 -0.39 -5.68 16 16 C -0.11 -2.47 10.02 -39.66 -0.40 -2.87 16 17 C -0.16 -4.08 8.67 -38.87 -0.34 -4.41 16 18 C 0.13 3.31 5.54 -106.82 -0.59 2.72 16 19 C -0.45 -11.19 8.12 -37.75 -0.31 -11.50 16 20 H 0.09 2.14 6.93 -52.49 -0.36 1.78 16 21 C 0.07 1.82 5.15 -17.34 -0.09 1.73 16 22 N -0.80 -20.28 11.10 55.55 0.62 -19.66 16 23 Si 0.90 18.48 29.59 -169.99 -5.03 13.45 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 27 C 0.09 1.36 5.27 -4.52 -0.02 1.33 16 28 C -0.12 -1.64 5.52 -27.42 -0.15 -1.79 16 29 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 30 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.08 1.04 7.21 -51.93 -0.37 0.67 16 34 H 0.08 1.15 5.41 -51.93 -0.28 0.87 16 35 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.06 0.93 7.86 -51.93 -0.41 0.52 16 37 H 0.08 1.52 7.19 -51.92 -0.37 1.14 16 38 H 0.02 0.38 4.44 -51.93 -0.23 0.15 16 39 H 0.08 1.51 8.03 -52.48 -0.42 1.09 16 40 H 0.08 1.62 8.06 -52.49 -0.42 1.19 16 41 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.11 2.96 6.37 -52.49 -0.33 2.62 16 43 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 44 H 0.06 0.96 7.86 -51.93 -0.41 0.55 16 45 H 0.10 1.68 6.69 -51.93 -0.35 1.34 16 46 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.10 1.40 4.93 -51.93 -0.26 1.14 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -27.60 368.53 -11.10 -38.70 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.31 Total: 8.44 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -4.52 Total: -17.42 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.63 Total: -44.96 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.17 Total: -3.76 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -27.60 -11.10 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.260 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds