Wall clock time and date at job start Sat Apr 11 2020 05:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35515 * 117.00025 * 2 1 4 4 N 1.33086 * 120.88026 * 0.02562 * 3 2 1 5 5 C 1.31763 * 120.81675 * 180.02562 * 4 3 2 6 6 N 1.31994 * 122.07712 * 359.95451 * 5 4 3 7 7 C 1.32388 * 120.28166 * 359.97438 * 6 5 4 8 8 C 1.37185 * 119.51482 * 0.11000 * 7 6 5 9 9 C 1.51226 * 120.20193 * 179.69697 * 8 7 6 10 10 C 1.53332 * 108.17636 * 69.51932 * 9 8 7 11 11 N 1.45358 * 110.76230 * 275.56667 * 10 9 8 12 12 C 1.46901 * 110.99641 * 301.11860 * 11 10 9 13 13 C 1.50698 * 109.46959 * 197.36343 * 12 11 10 14 14 C 1.37644 * 120.12797 * 260.00081 * 13 12 11 15 15 C 1.38611 * 120.24785 * 180.02562 * 14 13 12 16 16 C 1.38655 * 120.50344 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.24761 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12846 * 79.72744 * 13 12 11 19 19 C 1.41396 * 120.24684 * 359.97438 * 18 13 12 20 20 H 1.08000 * 119.99396 * 331.68244 * 19 18 13 21 21 C 1.39937 * 120.00189 * 151.68070 * 19 18 13 22 22 N 1.30824 * 120.00223 * 343.88799 * 21 19 18 23 23 Si 1.86808 * 120.00110 * 163.88903 * 21 19 18 24 24 H 1.48493 * 109.46847 * 59.99857 * 23 21 19 25 25 H 1.48493 * 109.47272 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47028 * 300.00133 * 23 21 19 27 27 C 1.45336 * 116.84594 * 69.76388 * 11 10 9 28 28 C 1.51331 * 120.55524 * 180.08275 * 7 6 5 29 29 H 1.09006 * 109.46738 * 60.00158 * 1 2 3 30 30 H 1.09001 * 109.47712 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47426 * 300.00457 * 1 2 3 32 32 H 1.07997 * 118.95870 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.72167 * 189.18962 * 9 8 7 34 34 H 1.09000 * 109.72525 * 309.80986 * 9 8 7 35 35 H 1.09001 * 109.22176 * 155.23127 * 10 9 8 36 36 H 1.08995 * 109.21837 * 35.89267 * 10 9 8 37 37 H 1.09007 * 109.47500 * 317.36121 * 12 11 10 38 38 H 1.08997 * 109.47340 * 77.36134 * 12 11 10 39 39 H 1.08005 * 119.87216 * 359.97438 * 14 13 12 40 40 H 1.08000 * 119.74530 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.87518 * 180.02562 * 16 15 14 42 42 H 1.07998 * 120.12525 * 179.97438 * 17 16 15 43 43 H 0.97002 * 120.00114 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.20248 * 50.41552 * 27 11 10 45 45 H 1.09005 * 109.19793 * 169.70786 * 27 11 10 46 46 H 1.08997 * 109.72077 * 351.23585 * 28 7 6 47 47 H 1.08998 * 109.72545 * 230.57769 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 7 1.3367 2.3346 0.0005 5 6 1.9362 3.5080 0.0000 6 7 3.2511 3.6233 -0.0001 7 6 4.0160 2.5428 0.0008 8 6 3.4321 1.3014 -0.0005 9 6 4.2910 0.0567 -0.0064 10 6 4.9866 -0.0509 1.3558 11 7 6.2027 0.7451 1.3777 12 6 7.1361 0.3090 0.3306 13 6 8.5150 0.8345 0.6362 14 6 8.9854 1.9562 -0.0081 15 6 10.2535 2.4415 0.2707 16 6 11.0619 1.8051 1.2002 17 6 10.6124 0.6823 1.8564 18 6 9.3244 0.1839 1.5855 19 6 8.8495 -0.9654 2.2583 20 1 7.7899 -1.0968 2.4205 21 6 9.7524 -1.9326 2.7140 22 7 10.9788 -1.9485 2.2588 23 14 9.2065 -3.2010 3.9721 24 1 8.0801 -3.9943 3.4184 25 1 10.3413 -4.1051 4.2879 26 1 8.7644 -2.5111 5.2107 27 6 6.0420 2.1895 1.3636 28 6 5.5241 2.6678 0.0025 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.3326 4.4035 0.0000 33 1 3.6657 -0.8209 -0.1705 34 1 5.0380 0.1290 -0.7968 35 1 5.2369 -1.0939 1.5495 36 1 4.3106 0.3054 2.1330 37 1 7.1617 -0.7803 0.2972 38 1 6.8059 0.6943 -0.6341 39 1 8.3643 2.4596 -0.7343 40 1 10.6145 3.3220 -0.2400 41 1 12.0481 2.1922 1.4099 42 1 11.2439 0.1879 2.5797 43 1 11.6048 -2.6187 2.5750 44 1 5.3327 2.4788 2.1389 45 1 7.0046 2.6592 1.5661 46 1 5.8070 3.7088 -0.1535 47 1 5.9455 2.0489 -0.7896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512746.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:51 Heat of formation + Delta-G solvation = 25.511275 kcal Electronic energy + Delta-G solvation = -29860.584895 eV Core-core repulsion = 26007.923375 eV Total energy + Delta-G solvation = -3852.661519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.64334 -40.36856 -39.52285 -38.61478 -35.37198 -34.88460 -34.36987 -32.32248 -32.04040 -31.15825 -29.02884 -28.04761 -27.30435 -26.36329 -25.98641 -24.29137 -22.71524 -22.41496 -22.12339 -20.50785 -19.53172 -18.94775 -18.87786 -17.31095 -17.21585 -16.69522 -16.54908 -16.51549 -16.00602 -15.76110 -15.59058 -15.57466 -15.18793 -15.01046 -14.60229 -14.42661 -14.22033 -13.70045 -13.49628 -13.28585 -13.23673 -12.96960 -12.79366 -12.76100 -12.68422 -12.49597 -12.36427 -12.26440 -12.15797 -12.02964 -11.92107 -11.50359 -11.23411 -11.19027 -11.00270 -10.92262 -10.43712 -10.09842 -9.12800 -9.07481 -8.72236 -8.48571 -6.14667 -0.13195 0.03392 1.09851 1.22634 1.43644 1.52594 1.61652 1.84142 2.28686 2.65720 2.88006 2.94562 3.08512 3.21265 3.64246 3.66485 3.90828 3.95687 4.10735 4.16833 4.26414 4.29263 4.36765 4.37958 4.47354 4.53424 4.59300 4.62395 4.64756 4.69775 4.75626 4.83309 4.88275 5.02317 5.06582 5.12802 5.21844 5.24972 5.28573 5.36641 5.47658 5.64697 5.79550 5.90274 6.05251 6.13566 6.27852 6.33556 6.41201 6.55709 6.63724 6.88938 7.01637 7.15965 7.24149 8.48533 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003574 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.297493 B = 7831.980899 C = 9503.110627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.355 3.645 4 N -0.584 5.584 5 C 0.321 3.679 6 N -0.548 5.548 7 C 0.199 3.801 8 C -0.210 4.210 9 C -0.097 4.097 10 C 0.084 3.916 11 N -0.559 5.559 12 C 0.137 3.863 13 C -0.188 4.188 14 C -0.087 4.087 15 C -0.243 4.243 16 C -0.117 4.117 17 C -0.193 4.193 18 C 0.103 3.897 19 C -0.472 4.472 20 H 0.089 0.911 21 C 0.035 3.965 22 N -0.836 5.836 23 Si 0.967 3.033 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.267 1.267 27 C 0.094 3.906 28 C -0.105 4.105 29 H 0.062 0.938 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.281 0.719 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.058 4.208 -4.426 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.209 6.209 3 C 0.169 3.831 4 N -0.314 5.314 5 C 0.034 3.966 6 N -0.267 5.267 7 C 0.056 3.944 8 C -0.215 4.215 9 C -0.137 4.137 10 C -0.044 4.044 11 N -0.280 5.280 12 C 0.011 3.989 13 C -0.190 4.190 14 C -0.106 4.106 15 C -0.262 4.262 16 C -0.136 4.136 17 C -0.213 4.213 18 C 0.101 3.899 19 C -0.502 4.502 20 H 0.107 0.893 21 C -0.179 4.179 22 N -0.463 5.463 23 Si 0.790 3.210 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.035 4.035 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.144 0.856 31 H 0.079 0.921 32 H 0.247 0.753 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.095 0.905 46 H 0.117 0.883 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.148 4.441 -3.982 19.103 hybrid contribution 0.148 -0.999 -0.035 1.010 sum -18.000 3.442 -4.017 18.761 Atomic orbital electron populations 1.23201 0.75020 1.05193 1.02681 1.86237 1.24936 1.23229 1.86531 1.20011 0.89138 0.85573 0.88391 1.68211 1.41814 0.99192 1.22222 1.25393 0.88412 0.94690 0.88102 1.68599 1.07040 1.32822 1.18223 1.21457 0.97667 0.87220 0.88017 1.20490 0.92236 0.98503 1.10237 1.21274 0.98073 0.94195 1.00164 1.21733 0.89303 0.98429 0.94886 1.59311 1.13596 1.04423 1.50704 1.20478 0.88283 0.98929 0.91169 1.19857 0.97373 1.00278 1.01481 1.20707 0.95453 0.95541 0.98909 1.20677 0.96573 1.03616 1.05313 1.20898 0.98518 0.96232 0.97917 1.21258 0.98862 0.97608 1.03547 1.17689 0.91042 0.91783 0.89415 1.19815 0.95206 1.03013 1.32193 0.89302 1.26650 0.94341 1.00270 0.96606 1.69903 1.06346 1.32986 1.37042 0.85469 0.78732 0.77724 0.79074 1.18178 1.20216 1.19171 1.21502 1.00834 0.87132 0.94003 1.21569 0.86927 1.04660 1.01319 0.91921 0.85567 0.92060 0.75302 0.89018 0.90042 0.90126 0.91877 0.91937 0.93873 0.86762 0.87137 0.88350 0.89348 0.90862 0.92100 0.90495 0.88294 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.42 113.37 1.18 1.67 16 2 O -0.31 -6.78 9.45 -88.18 -0.83 -7.61 16 3 C 0.36 8.89 7.51 84.71 0.64 9.53 16 4 N -0.58 -13.62 9.43 -312.66 -2.95 -16.57 16 5 C 0.32 6.90 12.27 180.83 2.22 9.12 16 6 N -0.55 -14.02 10.42 -188.35 -1.96 -15.98 16 7 C 0.20 5.30 5.93 42.43 0.25 5.55 16 8 C -0.21 -5.47 5.02 -19.74 -0.10 -5.57 16 9 C -0.10 -2.45 5.36 30.13 0.16 -2.28 16 10 C 0.08 2.42 5.54 86.71 0.48 2.90 16 11 N -0.56 -18.62 4.16 -907.74 -3.77 -22.39 16 12 C 0.14 4.96 3.32 85.56 0.28 5.25 16 13 C -0.19 -8.18 4.60 -19.40 -0.09 -8.27 16 14 C -0.09 -3.51 8.75 22.22 0.19 -3.31 16 15 C -0.24 -10.15 10.05 22.46 0.23 -9.92 16 16 C -0.12 -5.44 10.02 22.22 0.22 -5.21 16 17 C -0.19 -10.12 8.67 22.73 0.20 -9.92 16 18 C 0.10 5.28 5.54 -21.29 -0.12 5.16 16 19 C -0.47 -24.19 8.12 23.46 0.19 -24.00 16 20 H 0.09 4.39 6.93 -2.91 -0.02 4.37 16 21 C 0.03 1.73 5.15 85.25 0.44 2.17 16 22 N -0.84 -44.01 11.10 21.82 0.24 -43.77 16 23 Si 0.97 38.64 29.59 68.60 2.03 40.67 16 24 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 25 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 27 C 0.09 2.89 5.27 86.69 0.46 3.34 16 28 C -0.11 -2.77 5.52 30.15 0.17 -2.61 16 29 H 0.06 0.89 8.13 -2.38 -0.02 0.87 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 32 H 0.23 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.09 2.15 7.21 -2.39 -0.02 2.13 16 34 H 0.08 2.10 5.41 -2.39 -0.01 2.08 16 35 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 36 H 0.06 1.81 7.86 -2.39 -0.02 1.79 16 37 H 0.06 2.45 7.19 -2.38 -0.02 2.44 16 38 H 0.04 1.38 4.44 -2.39 -0.01 1.37 16 39 H 0.11 3.83 8.03 -2.91 -0.02 3.81 16 40 H 0.11 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.09 4.95 6.37 -2.91 -0.02 4.93 16 43 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 44 H 0.06 1.86 7.86 -2.39 -0.02 1.84 16 45 H 0.08 2.65 6.69 -2.38 -0.02 2.63 16 46 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.10 2.55 4.93 -2.39 -0.01 2.54 16 Total: -1.00 -60.34 368.53 0.75 -59.59 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 1.00 Total: 32.46 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 7.00 Total: -26.40 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -8.45 Total: -98.71 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.83 Total: -7.61 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -60.34 0.75 -59.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512746.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.099 kcal (2) G-P(sol) polarization free energy of solvation -60.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds