Wall clock time and date at job start Sat Apr 11 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00370 * 2 1 4 4 C 1.53001 * 109.46713 * 270.20194 * 3 2 1 5 5 H 1.09004 * 112.74023 * 43.11855 * 4 3 2 6 6 C 1.53493 * 113.52484 * 272.32168 * 4 3 2 7 7 C 1.53750 * 83.25997 * 218.97864 * 6 4 3 8 8 N 1.47068 * 87.88968 * 26.23646 * 7 6 4 9 9 C 1.36939 * 136.05649 * 152.96208 * 8 7 6 10 10 H 1.07995 * 119.99825 * 176.85132 * 9 8 7 11 11 C 1.38817 * 120.00010 * 357.13606 * 9 8 7 12 12 N 1.31613 * 119.99851 * 359.71777 * 11 9 8 13 13 Si 1.86791 * 119.99903 * 179.72438 * 11 9 8 14 14 H 1.48494 * 109.47507 * 89.99597 * 13 11 9 15 15 H 1.48501 * 109.47018 * 209.99765 * 13 11 9 16 16 H 1.48505 * 109.47279 * 329.99247 * 13 11 9 17 17 C 1.34782 * 119.99673 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99955 * 180.02562 * 17 2 1 19 19 C 1.50695 * 120.00178 * 0.02562 * 17 2 1 20 20 C 1.50705 * 109.47367 * 179.97438 * 19 17 2 21 21 C 1.36208 * 120.66240 * 264.71742 * 20 19 17 22 22 N 1.32577 * 121.87482 * 179.74443 * 21 20 19 23 23 C 1.31266 * 122.77136 * 0.54929 * 22 21 20 24 24 C 1.40394 * 119.88591 * 359.72992 * 23 22 21 25 25 C 1.40383 * 122.08275 * 180.02562 * 24 23 22 26 26 C 1.36160 * 119.51691 * 180.02562 * 25 24 23 27 27 C 1.39382 * 121.09037 * 359.95399 * 26 25 24 28 28 C 1.36210 * 121.02288 * 0.02562 * 27 26 25 29 29 C 1.40234 * 119.48175 * 0.02562 * 28 27 26 30 30 H 1.09009 * 109.46669 * 93.43145 * 1 2 3 31 31 H 1.08992 * 109.47660 * 213.43423 * 1 2 3 32 32 H 1.08997 * 109.47265 * 333.43897 * 1 2 3 33 33 H 1.09000 * 109.47356 * 150.20618 * 3 2 1 34 34 H 1.08994 * 109.47369 * 30.20098 * 3 2 1 35 35 H 1.09011 * 114.20289 * 332.73299 * 6 4 3 36 36 H 1.08993 * 114.20898 * 105.35690 * 6 4 3 37 37 H 1.09000 * 113.46282 * 271.50227 * 7 6 4 38 38 H 1.09001 * 113.55805 * 140.98789 * 7 6 4 39 39 H 0.97001 * 120.00396 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.47207 * 299.99723 * 19 17 2 41 41 H 1.08994 * 109.47442 * 59.99179 * 19 17 2 42 42 H 1.08000 * 119.06417 * 0.02562 * 21 20 19 43 43 H 1.08003 * 120.05873 * 179.74476 * 23 22 21 44 44 H 1.08002 * 120.24038 * 359.97438 * 25 24 23 45 45 H 1.07998 * 119.45581 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.48696 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.26114 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4481 1.7128 -1.4425 5 1 1.5753 1.5800 -2.0819 6 6 3.7393 1.1409 -2.0441 7 6 3.8519 2.5400 -2.6717 8 7 3.0528 3.0493 -1.5471 9 6 2.9240 4.2440 -0.8903 10 1 2.1959 4.3498 -0.0997 11 6 3.7252 5.3208 -1.2448 12 7 4.6124 5.1919 -2.2083 13 14 3.5442 6.9527 -0.3540 14 1 4.4546 6.9802 0.8187 15 1 3.8928 8.0620 -1.2776 16 1 2.1409 7.1132 0.1048 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 6 2.3645 -3.6179 0.0005 21 6 2.7339 -4.2160 -1.1661 22 7 3.5970 -5.2219 -1.1945 23 6 4.1459 -5.7180 -0.1103 24 6 3.8281 -5.1763 1.1454 25 6 4.3881 -5.6704 2.3340 26 6 4.0424 -5.1059 3.5239 27 6 3.1416 -4.0439 3.5819 28 6 2.5787 -3.5381 2.4493 29 6 2.9103 -4.0951 1.2058 30 1 -0.3633 -0.0615 -1.0259 31 1 -0.3634 -0.8575 0.5662 32 1 -0.3634 0.9192 0.4595 33 1 3.1515 1.1374 0.5106 34 1 1.6101 2.0274 0.5169 35 1 4.5120 0.9134 -1.3097 36 1 3.5797 0.3384 -2.7642 37 1 3.3493 2.6252 -3.6352 38 1 4.8704 2.9279 -2.6914 39 1 5.1725 5.9441 -2.4558 40 1 0.7583 -2.5299 0.8903 41 1 0.7589 -2.5302 -0.8896 42 1 2.3152 -3.8576 -2.0949 43 1 4.8411 -6.5412 -0.1839 44 1 5.0875 -6.4929 2.3050 45 1 4.4735 -5.4871 4.4377 46 1 2.8860 -3.6153 4.5397 47 1 1.8824 -2.7146 2.5085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235534261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:56 Heat of formation + Delta-G solvation = 86.203045 kcal Electronic energy + Delta-G solvation = -29028.573713 eV Core-core repulsion = 25178.543987 eV Total energy + Delta-G solvation = -3850.029727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18954 -39.67685 -37.87977 -37.47155 -35.24239 -34.28949 -32.16729 -31.39156 -30.62558 -29.12628 -27.85228 -27.57936 -26.06515 -24.13376 -23.71805 -23.34473 -22.49521 -21.33814 -19.15433 -18.96254 -18.15766 -17.76916 -17.05033 -16.67663 -16.49993 -15.92323 -15.54108 -14.99805 -14.73369 -14.54967 -14.33548 -14.04397 -13.91323 -13.58448 -13.51593 -13.29353 -13.05760 -12.83909 -12.70747 -12.30325 -12.21255 -12.09742 -11.95476 -11.89844 -11.44474 -11.24875 -11.03415 -10.83259 -10.72178 -10.37005 -10.27068 -9.80970 -9.72635 -9.64000 -9.58643 -9.38559 -9.23762 -8.75557 -8.27556 -8.18620 -6.82974 -5.72334 -3.05773 0.17718 0.75526 1.72575 2.77569 2.88019 3.18196 3.39953 3.43746 3.46434 3.91645 4.15509 4.35902 4.47132 4.50650 4.54219 4.64954 4.67803 4.79173 4.90647 4.98698 5.04004 5.11812 5.28853 5.30341 5.37371 5.40833 5.49702 5.56452 5.64752 5.66694 5.68006 5.82623 5.87421 5.93480 6.04559 6.10499 6.17145 6.25905 6.44701 6.46318 6.57808 6.63992 6.69470 6.84592 6.86349 7.30648 7.50506 7.59699 7.65688 7.84812 8.03351 8.36435 9.06264 9.73909 10.69909 11.44459 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002597 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.179369 B =10777.956919 C =11069.735879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.117 3.883 4 C 0.131 3.869 5 H 0.039 0.961 6 C -0.153 4.153 7 C 0.148 3.852 8 N -0.601 5.601 9 C -0.218 4.218 10 H 0.079 0.921 11 C -0.007 4.007 12 N -0.917 5.917 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.282 1.282 17 C 0.510 3.490 18 O -0.520 6.520 19 C -0.099 4.099 20 C -0.094 4.094 21 C 0.089 3.911 22 N -0.483 5.483 23 C 0.140 3.860 24 C -0.112 4.112 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.099 4.099 28 C -0.106 4.106 29 C -0.007 4.007 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.253 0.747 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.132 0.868 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 -23.500 9.321 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.006 4.006 4 C 0.023 3.977 5 H 0.056 0.944 6 C -0.191 4.191 7 C 0.022 3.978 8 N -0.327 5.327 9 C -0.346 4.346 10 H 0.096 0.904 11 C -0.204 4.204 12 N -0.564 5.564 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.208 1.208 17 C 0.297 3.703 18 O -0.395 6.395 19 C -0.139 4.139 20 C -0.096 4.096 21 C -0.055 4.055 22 N -0.190 5.190 23 C -0.031 4.031 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.012 4.012 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.169 0.831 43 H 0.179 0.821 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.384 -23.358 8.496 25.928 hybrid contribution -0.547 1.560 1.130 2.003 sum -7.931 -21.797 9.626 25.114 Atomic orbital electron populations 1.21810 0.80049 1.02928 1.01847 1.47909 1.06703 1.06558 1.73460 1.21928 0.97208 0.82205 0.99274 1.22427 0.95042 0.87017 0.93207 0.94358 1.23642 0.98272 0.97051 1.00144 1.22149 0.97875 0.87978 0.89753 1.45622 1.46108 1.05988 1.34996 1.18862 1.16607 0.86394 1.12709 0.90371 1.24788 0.98669 0.98105 0.98851 1.69839 1.24698 1.30638 1.31222 0.86141 0.77526 0.83476 0.78714 1.21511 1.21665 1.20756 1.20292 0.88168 0.84680 0.77175 1.90758 1.13535 1.86952 1.48208 1.20645 0.97384 0.90665 1.05246 1.20021 0.99042 0.96964 0.93621 1.22018 0.94025 0.92151 0.97258 1.67417 1.08305 1.11206 1.32083 1.23157 0.96016 0.97321 0.86622 1.19005 0.99026 0.97606 0.95718 1.20965 0.98785 0.99527 0.91434 1.20907 0.98196 0.96742 0.98152 1.20975 0.96232 0.96021 0.98620 1.20938 1.00518 0.99507 0.91470 1.17945 0.95222 0.94437 0.93633 0.92497 0.91638 0.90720 0.89673 0.90918 0.90075 0.93462 0.96213 0.90845 0.93679 0.88013 0.87579 0.83143 0.82110 0.85002 0.85663 0.85648 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.22 59.84 0.61 1.34 16 2 N -0.61 -8.55 2.87 -181.58 -0.52 -9.07 16 3 C 0.12 2.12 5.41 -4.04 -0.02 2.10 16 4 C 0.13 2.77 4.31 -72.40 -0.31 2.46 16 5 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 6 C -0.15 -3.30 7.47 -26.09 -0.19 -3.49 16 7 C 0.15 3.73 7.48 -8.38 -0.06 3.67 16 8 N -0.60 -15.75 3.65 -176.84 -0.65 -16.39 16 9 C -0.22 -6.13 10.55 -15.06 -0.16 -6.29 16 10 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -27.88 11.45 55.49 0.64 -27.25 16 13 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C 0.51 7.35 7.67 -10.99 -0.08 7.27 16 18 O -0.52 -9.82 15.04 5.55 0.08 -9.74 16 19 C -0.10 -1.00 3.91 -29.03 -0.11 -1.11 16 20 C -0.09 -1.14 4.40 -104.44 -0.46 -1.60 16 21 C 0.09 1.11 10.72 -17.96 -0.19 0.92 16 22 N -0.48 -6.28 10.30 -13.16 -0.14 -6.42 16 23 C 0.14 1.54 11.05 -16.98 -0.19 1.35 16 24 C -0.11 -1.25 5.74 -106.86 -0.61 -1.86 16 25 C -0.09 -0.76 9.81 -39.52 -0.39 -1.15 16 26 C -0.12 -1.01 9.94 -39.90 -0.40 -1.40 16 27 C -0.10 -0.90 9.95 -39.89 -0.40 -1.29 16 28 C -0.11 -1.14 9.33 -39.56 -0.37 -1.51 16 29 C -0.01 -0.09 5.75 -106.82 -0.61 -0.70 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.42 6.58 -51.93 -0.34 0.08 16 32 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 33 H 0.08 1.76 7.13 -51.93 -0.37 1.39 16 34 H 0.07 1.30 7.87 -51.93 -0.41 0.89 16 35 H 0.08 1.87 7.93 -51.92 -0.41 1.46 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 2.05 7.00 -51.93 -0.36 1.68 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.10 0.77 6.10 -51.93 -0.32 0.46 16 41 H 0.11 0.82 8.02 -51.93 -0.42 0.41 16 42 H 0.15 1.62 8.05 -52.49 -0.42 1.19 16 43 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 1.20 6.65 -52.48 -0.35 0.85 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -36.13 387.50 -10.55 -46.68 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.74 Total: 0.69 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -4.05 Total: -1.61 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.67 Total: -59.13 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.74 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.13 -10.55 -46.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235534261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.883 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds