Wall clock time and date at job start Sat Apr 11 2020 05:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00370 * 2 1 4 4 C 1.53001 * 109.46713 * 270.20194 * 3 2 1 5 5 H 1.09004 * 112.74023 * 43.11855 * 4 3 2 6 6 C 1.53493 * 113.52484 * 272.32168 * 4 3 2 7 7 C 1.53750 * 83.25997 * 218.97864 * 6 4 3 8 8 N 1.47068 * 87.88968 * 26.23646 * 7 6 4 9 9 C 1.36939 * 136.05649 * 152.96208 * 8 7 6 10 10 H 1.07995 * 119.99825 * 176.85132 * 9 8 7 11 11 C 1.38817 * 120.00010 * 357.13606 * 9 8 7 12 12 N 1.31613 * 119.99851 * 359.71777 * 11 9 8 13 13 Si 1.86791 * 119.99903 * 179.72438 * 11 9 8 14 14 H 1.48494 * 109.47507 * 89.99597 * 13 11 9 15 15 H 1.48501 * 109.47018 * 209.99765 * 13 11 9 16 16 H 1.48505 * 109.47279 * 329.99247 * 13 11 9 17 17 C 1.34782 * 119.99673 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99955 * 180.02562 * 17 2 1 19 19 C 1.50695 * 120.00178 * 0.02562 * 17 2 1 20 20 C 1.50705 * 109.47367 * 179.97438 * 19 17 2 21 21 C 1.36208 * 120.66240 * 264.71742 * 20 19 17 22 22 N 1.32577 * 121.87482 * 179.74443 * 21 20 19 23 23 C 1.31266 * 122.77136 * 0.54929 * 22 21 20 24 24 C 1.40394 * 119.88591 * 359.72992 * 23 22 21 25 25 C 1.40383 * 122.08275 * 180.02562 * 24 23 22 26 26 C 1.36160 * 119.51691 * 180.02562 * 25 24 23 27 27 C 1.39382 * 121.09037 * 359.95399 * 26 25 24 28 28 C 1.36210 * 121.02288 * 0.02562 * 27 26 25 29 29 C 1.40234 * 119.48175 * 0.02562 * 28 27 26 30 30 H 1.09009 * 109.46669 * 93.43145 * 1 2 3 31 31 H 1.08992 * 109.47660 * 213.43423 * 1 2 3 32 32 H 1.08997 * 109.47265 * 333.43897 * 1 2 3 33 33 H 1.09000 * 109.47356 * 150.20618 * 3 2 1 34 34 H 1.08994 * 109.47369 * 30.20098 * 3 2 1 35 35 H 1.09011 * 114.20289 * 332.73299 * 6 4 3 36 36 H 1.08993 * 114.20898 * 105.35690 * 6 4 3 37 37 H 1.09000 * 113.46282 * 271.50227 * 7 6 4 38 38 H 1.09001 * 113.55805 * 140.98789 * 7 6 4 39 39 H 0.97001 * 120.00396 * 180.02562 * 12 11 9 40 40 H 1.09004 * 109.47207 * 299.99723 * 19 17 2 41 41 H 1.08994 * 109.47442 * 59.99179 * 19 17 2 42 42 H 1.08000 * 119.06417 * 0.02562 * 21 20 19 43 43 H 1.08003 * 120.05873 * 179.74476 * 23 22 21 44 44 H 1.08002 * 120.24038 * 359.97438 * 25 24 23 45 45 H 1.07998 * 119.45581 * 179.97438 * 26 25 24 46 46 H 1.07999 * 119.48696 * 180.02562 * 27 26 25 47 47 H 1.08004 * 120.26114 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4481 1.7128 -1.4425 5 1 1.5753 1.5800 -2.0819 6 6 3.7393 1.1409 -2.0441 7 6 3.8519 2.5400 -2.6717 8 7 3.0528 3.0493 -1.5471 9 6 2.9240 4.2440 -0.8903 10 1 2.1959 4.3498 -0.0997 11 6 3.7252 5.3208 -1.2448 12 7 4.6124 5.1919 -2.2083 13 14 3.5442 6.9527 -0.3540 14 1 4.4546 6.9802 0.8187 15 1 3.8928 8.0620 -1.2776 16 1 2.1409 7.1132 0.1048 17 6 2.1388 -1.1673 0.0005 18 8 3.3517 -1.1673 0.0010 19 6 1.3853 -2.4723 0.0005 20 6 2.3645 -3.6179 0.0005 21 6 2.7339 -4.2160 -1.1661 22 7 3.5970 -5.2219 -1.1945 23 6 4.1459 -5.7180 -0.1103 24 6 3.8281 -5.1763 1.1454 25 6 4.3881 -5.6704 2.3340 26 6 4.0424 -5.1059 3.5239 27 6 3.1416 -4.0439 3.5819 28 6 2.5787 -3.5381 2.4493 29 6 2.9103 -4.0951 1.2058 30 1 -0.3633 -0.0615 -1.0259 31 1 -0.3634 -0.8575 0.5662 32 1 -0.3634 0.9192 0.4595 33 1 3.1515 1.1374 0.5106 34 1 1.6101 2.0274 0.5169 35 1 4.5120 0.9134 -1.3097 36 1 3.5797 0.3384 -2.7642 37 1 3.3493 2.6252 -3.6352 38 1 4.8704 2.9279 -2.6914 39 1 5.1725 5.9441 -2.4558 40 1 0.7583 -2.5299 0.8903 41 1 0.7589 -2.5302 -0.8896 42 1 2.3152 -3.8576 -2.0949 43 1 4.8411 -6.5412 -0.1839 44 1 5.0875 -6.4929 2.3050 45 1 4.4735 -5.4871 4.4377 46 1 2.8860 -3.6153 4.5397 47 1 1.8824 -2.7146 2.5085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235534261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:55 Heat of formation + Delta-G solvation = 64.219630 kcal Electronic energy + Delta-G solvation = -29029.526986 eV Core-core repulsion = 25178.543987 eV Total energy + Delta-G solvation = -3850.982999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.99599 -40.89216 -39.59261 -38.22117 -36.44366 -35.14157 -34.27008 -32.13829 -31.43813 -30.30499 -29.92003 -28.54410 -27.11705 -25.41933 -24.93813 -24.49775 -23.92926 -22.31285 -21.05763 -20.06127 -18.88506 -18.77420 -18.51914 -17.96172 -17.40873 -17.21469 -16.83824 -16.40295 -15.88291 -15.72540 -15.38881 -15.25426 -15.22757 -14.70708 -14.60367 -14.31245 -13.99773 -13.91244 -13.77288 -13.59801 -13.46044 -13.08752 -13.04853 -12.97070 -12.92460 -12.68657 -12.63526 -12.49401 -12.24062 -11.93012 -11.80026 -11.68844 -11.20887 -11.12401 -10.86224 -10.66225 -10.42689 -9.99161 -9.57876 -8.94857 -8.92215 -7.89301 -5.24569 -0.57225 -0.01604 0.96720 1.44258 1.47673 1.55525 1.69798 2.01494 2.20018 2.48415 3.11857 3.30634 3.40249 3.42764 3.61164 3.75157 3.81446 3.82394 3.88565 3.97862 4.08518 4.23244 4.24608 4.32939 4.34980 4.36511 4.41246 4.45479 4.59377 4.67184 4.69892 4.78142 4.83447 4.84591 4.97369 4.99218 5.00758 5.06557 5.13194 5.17107 5.21239 5.47389 5.49433 5.51357 5.52983 5.69697 5.73229 5.92580 5.96260 6.49541 6.88528 7.02457 7.27009 7.60001 8.61256 9.28313 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002597 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.179369 B =10777.956919 C =11069.735879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.133 3.867 4 C 0.140 3.860 5 H 0.055 0.945 6 C -0.129 4.129 7 C 0.144 3.856 8 N -0.628 5.628 9 C -0.223 4.223 10 H 0.092 0.908 11 C -0.073 4.073 12 N -0.957 5.957 13 Si 0.982 3.018 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.262 1.262 17 C 0.508 3.492 18 O -0.572 6.572 19 C -0.086 4.086 20 C -0.107 4.107 21 C 0.068 3.932 22 N -0.514 5.514 23 C 0.136 3.864 24 C -0.133 4.133 25 C -0.089 4.089 26 C -0.125 4.125 27 C -0.099 4.099 28 C -0.129 4.129 29 C -0.031 4.031 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.020 0.980 38 H 0.037 0.963 39 H 0.247 0.753 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.159 0.841 43 H 0.190 0.810 44 H 0.162 0.838 45 H 0.155 0.845 46 H 0.148 0.852 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 -24.972 11.398 29.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.343 5.343 3 C 0.008 3.992 4 C 0.033 3.967 5 H 0.073 0.927 6 C -0.168 4.168 7 C 0.018 3.982 8 N -0.355 5.355 9 C -0.351 4.351 10 H 0.110 0.890 11 C -0.266 4.266 12 N -0.606 5.606 13 Si 0.810 3.190 14 H -0.214 1.214 15 H -0.223 1.223 16 H -0.187 1.187 17 C 0.297 3.703 18 O -0.451 6.451 19 C -0.126 4.126 20 C -0.109 4.109 21 C -0.075 4.075 22 N -0.221 5.221 23 C -0.035 4.035 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.143 4.143 27 C -0.118 4.118 28 C -0.146 4.146 29 C -0.036 4.036 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.207 0.793 44 H 0.179 0.821 45 H 0.173 0.827 46 H 0.166 0.834 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.602 -24.867 10.591 28.683 hybrid contribution 0.145 1.901 0.541 1.982 sum -9.456 -22.966 11.131 27.217 Atomic orbital electron populations 1.22152 0.76778 1.04924 1.03444 1.47932 1.08532 1.04817 1.73020 1.21402 0.96649 0.84515 0.96636 1.22495 0.94801 0.84095 0.95322 0.92736 1.23351 0.98206 0.95625 0.99577 1.22106 0.95944 0.90064 0.90104 1.45932 1.47051 1.07258 1.35209 1.19340 1.16100 0.87053 1.12586 0.89046 1.25716 0.98818 1.01932 1.00095 1.70054 1.26018 1.31263 1.33283 0.85029 0.78278 0.78614 0.77117 1.21387 1.22350 1.18686 1.21044 0.87766 0.85857 0.75626 1.90742 1.16084 1.87728 1.50524 1.20663 0.96882 0.87116 1.07962 1.20211 0.99647 0.97493 0.93529 1.22252 0.94593 0.92697 0.97968 1.67413 1.09371 1.12137 1.33186 1.23679 0.95833 0.97647 0.86321 1.19332 0.99468 0.97898 0.96755 1.21348 0.98736 1.00070 0.90704 1.21319 0.97601 0.96183 0.99213 1.21370 0.95519 0.95803 0.99136 1.21116 1.01667 1.00293 0.91572 1.18287 0.95842 0.95147 0.94314 0.91279 0.87904 0.90377 0.92807 0.90423 0.92029 0.91252 0.96267 0.94468 0.94427 0.85039 0.84768 0.82423 0.79302 0.82088 0.82711 0.83416 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 10.22 127.77 1.31 2.35 16 2 N -0.61 -15.83 2.87 -846.78 -2.43 -18.26 16 3 C 0.13 4.74 5.41 86.38 0.47 5.21 16 4 C 0.14 5.83 4.31 41.79 0.18 6.01 16 5 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 6 C -0.13 -5.67 7.47 31.01 0.23 -5.44 16 7 C 0.14 7.48 7.48 83.26 0.62 8.11 16 8 N -0.63 -33.36 3.65 -713.40 -2.60 -35.97 16 9 C -0.22 -12.58 10.55 84.03 0.89 -11.70 16 10 H 0.09 4.78 7.83 -2.91 -0.02 4.75 16 11 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 12 N -0.96 -60.16 11.45 21.65 0.25 -59.91 16 13 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 14 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 15 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 C 0.51 13.96 7.67 87.65 0.67 14.64 16 18 O -0.57 -21.86 15.04 -3.05 -0.05 -21.90 16 19 C -0.09 -1.54 3.91 29.10 0.11 -1.43 16 20 C -0.11 -2.49 4.40 -19.75 -0.09 -2.58 16 21 C 0.07 1.69 10.72 84.11 0.90 2.59 16 22 N -0.51 -13.40 10.30 -195.54 -2.01 -15.42 16 23 C 0.14 2.91 11.05 85.30 0.94 3.85 16 24 C -0.13 -2.85 5.74 -21.31 -0.12 -2.97 16 25 C -0.09 -1.37 9.81 22.31 0.22 -1.15 16 26 C -0.13 -1.74 9.94 22.06 0.22 -1.52 16 27 C -0.10 -1.58 9.95 22.07 0.22 -1.36 16 28 C -0.13 -2.57 9.33 22.28 0.21 -2.36 16 29 C -0.03 -0.73 5.75 -21.29 -0.12 -0.85 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.10 0.82 6.58 -2.39 -0.02 0.81 16 32 H 0.08 1.17 7.85 -2.39 -0.02 1.15 16 33 H 0.05 2.27 7.13 -2.39 -0.02 2.26 16 34 H 0.08 2.69 7.87 -2.39 -0.02 2.67 16 35 H 0.06 2.95 7.93 -2.38 -0.02 2.93 16 36 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.04 2.18 7.00 -2.39 -0.02 2.17 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.13 1.53 6.10 -2.39 -0.01 1.52 16 41 H 0.13 1.63 8.02 -2.39 -0.02 1.61 16 42 H 0.16 3.39 8.05 -2.91 -0.02 3.36 16 43 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 47 H 0.13 2.30 6.65 -2.91 -0.02 2.28 16 Total: -1.00 -82.65 387.50 3.48 -79.17 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.97 Total: 16.31 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 7.32 Total: 7.62 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -6.80 Total: -129.55 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.90 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -82.65 3.48 -79.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235534261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.392 kcal (2) G-P(sol) polarization free energy of solvation -82.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds