Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99917 * 2 1 4 4 C 1.53001 * 109.47283 * 274.72929 * 3 2 1 5 5 H 1.09006 * 112.73856 * 316.17664 * 4 3 2 6 6 C 1.53492 * 113.47173 * 87.00238 * 4 3 2 7 7 C 1.53500 * 83.34617 * 140.85063 * 6 4 3 8 8 N 1.47068 * 87.98367 * 333.93261 * 7 6 4 9 9 C 1.36939 * 136.05699 * 207.15903 * 8 7 6 10 10 H 1.07999 * 119.99977 * 174.73758 * 9 8 7 11 11 C 1.38810 * 119.99790 * 354.73522 * 9 8 7 12 12 N 1.31622 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46895 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46850 * 120.00037 * 13 11 9 16 16 H 1.48498 * 109.46915 * 240.00009 * 13 11 9 17 17 C 1.34774 * 120.00266 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00233 * 175.01566 * 17 2 1 19 19 C 1.50695 * 119.99732 * 355.02125 * 17 2 1 20 20 C 1.50708 * 109.47297 * 179.97438 * 19 17 2 21 21 C 1.36208 * 120.66775 * 265.00025 * 20 19 17 22 22 N 1.32571 * 121.87626 * 179.97438 * 21 20 19 23 23 C 1.31272 * 122.77420 * 359.97438 * 22 21 20 24 24 C 1.40384 * 119.88448 * 0.02562 * 23 22 21 25 25 C 1.40385 * 122.07950 * 179.97438 * 24 23 22 26 26 C 1.36172 * 119.51395 * 180.02562 * 25 24 23 27 27 C 1.39384 * 121.08775 * 359.95997 * 26 25 24 28 28 C 1.36208 * 121.02567 * 0.03919 * 27 26 25 29 29 C 1.40234 * 119.48425 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47404 * 269.99866 * 1 2 3 31 31 H 1.09005 * 109.47123 * 30.00105 * 1 2 3 32 32 H 1.09003 * 109.47199 * 149.99720 * 1 2 3 33 33 H 1.09004 * 109.46959 * 34.72480 * 3 2 1 34 34 H 1.08997 * 109.47536 * 154.72379 * 3 2 1 35 35 H 1.09007 * 114.20465 * 254.43528 * 6 4 3 36 36 H 1.08994 * 114.20749 * 27.25729 * 6 4 3 37 37 H 1.09001 * 113.46498 * 219.15603 * 7 6 4 38 38 H 1.08998 * 113.52284 * 88.71873 * 7 6 4 39 39 H 0.96997 * 119.99687 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.47789 * 60.00253 * 19 17 2 41 41 H 1.09001 * 109.47031 * 299.99808 * 19 17 2 42 42 H 1.08004 * 119.05944 * 0.25205 * 21 20 19 43 43 H 1.08007 * 120.05882 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.24453 * 0.02562 * 25 24 23 45 45 H 1.07996 * 119.45749 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.48124 * 180.02562 * 27 26 25 47 47 H 1.08006 * 120.25709 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3495 1.7699 -1.4376 5 1 2.6330 0.9788 -2.1318 6 6 1.1603 2.6116 -1.9205 7 6 2.2565 3.4515 -2.5907 8 7 3.1831 2.9761 -1.5523 9 6 4.3209 3.4488 -0.9547 10 1 4.7647 2.9063 -0.1330 11 6 4.9038 4.6254 -1.4049 12 7 4.3627 5.2869 -2.4059 13 14 6.4563 5.2700 -0.5900 14 1 6.8608 4.3490 0.5024 15 1 7.5455 5.3526 -1.5960 16 1 6.1969 6.6203 -0.0292 17 6 2.1389 -1.1671 -0.0005 18 8 3.3483 -1.1691 -0.0918 19 6 1.3897 -2.4698 0.1122 20 6 2.3681 -3.6159 0.0871 21 6 2.6536 -4.2602 -1.0784 22 7 3.5105 -5.2706 -1.1281 23 6 4.1413 -5.7201 -0.0682 24 6 3.9179 -5.1250 1.1835 25 6 4.5669 -5.5688 2.3465 26 6 4.3107 -4.9536 3.5340 27 6 3.4147 -3.8890 3.6144 28 6 2.7668 -3.4315 2.5070 29 6 3.0054 -4.0408 1.2667 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6476 2.0057 0.5854 34 1 3.1839 1.1188 0.4388 35 1 0.5022 2.0957 -2.6199 36 1 0.6256 3.1284 -1.1237 37 1 2.0690 4.5244 -2.5469 38 1 2.5151 3.1095 -3.5928 39 1 4.7698 6.1093 -2.7202 40 1 0.6980 -2.5648 -0.7249 41 1 0.8318 -2.4882 1.0484 42 1 2.1715 -3.9359 -1.9889 43 1 4.8303 -6.5468 -0.1589 44 1 5.2642 -6.3922 2.2998 45 1 4.8102 -5.2961 4.4282 46 1 3.2312 -3.4197 4.5697 47 1 2.0747 -2.6058 2.5837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235534264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = 84.940857 kcal Electronic energy + Delta-G solvation = -28933.779442 eV Core-core repulsion = 25083.694983 eV Total energy + Delta-G solvation = -3850.084459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.18673 -39.68477 -38.01174 -37.47144 -35.21899 -34.29427 -32.15738 -31.38743 -30.63183 -29.14419 -27.91492 -27.59583 -26.05908 -24.12797 -23.71786 -23.43014 -22.49872 -21.33317 -19.28163 -18.95045 -18.15595 -17.76330 -17.02989 -16.67663 -16.56846 -15.94584 -15.54219 -14.96832 -14.75079 -14.51996 -14.39960 -14.05787 -13.91691 -13.62727 -13.57079 -13.17786 -13.09776 -12.83042 -12.62360 -12.50343 -12.28812 -12.13442 -11.91288 -11.80430 -11.46417 -11.24462 -11.11109 -10.88503 -10.75445 -10.39340 -10.27192 -9.83748 -9.80849 -9.65961 -9.59787 -9.37552 -9.23137 -8.76625 -8.30000 -8.18110 -6.83443 -5.73312 -3.04833 0.18101 0.76056 1.72996 2.75714 2.88204 3.17341 3.42141 3.48369 3.50732 3.91903 4.15602 4.36146 4.50235 4.50953 4.54975 4.64702 4.68687 4.81159 4.89420 4.99465 5.08169 5.09024 5.22339 5.28990 5.35406 5.40876 5.49648 5.52934 5.56875 5.67553 5.70394 5.80769 5.84125 5.87802 5.98663 6.17852 6.18120 6.26331 6.30532 6.45013 6.45354 6.55121 6.64659 6.69638 6.88855 7.26632 7.42867 7.55409 7.60397 7.84821 8.02318 8.34762 9.08921 9.74946 10.68747 11.44971 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.002855 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.555940 B = 9804.821899 C =10656.615097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.611 5.611 3 C 0.116 3.884 4 C 0.134 3.866 5 H 0.042 0.958 6 C -0.169 4.169 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.214 4.214 10 H 0.081 0.919 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.290 1.290 17 C 0.508 3.492 18 O -0.523 6.523 19 C -0.098 4.098 20 C -0.096 4.096 21 C 0.088 3.912 22 N -0.484 5.484 23 C 0.141 3.859 24 C -0.112 4.112 25 C -0.087 4.087 26 C -0.122 4.122 27 C -0.099 4.099 28 C -0.107 4.107 29 C -0.007 4.007 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.024 0.976 39 H 0.252 0.748 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.162 0.838 44 H 0.132 0.868 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 -21.653 10.194 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.345 5.345 3 C -0.007 4.007 4 C 0.025 3.975 5 H 0.060 0.940 6 C -0.207 4.207 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.341 4.341 10 H 0.099 0.901 11 C -0.204 4.204 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.217 1.217 17 C 0.294 3.706 18 O -0.398 6.398 19 C -0.139 4.139 20 C -0.098 4.098 21 C -0.055 4.055 22 N -0.191 5.191 23 C -0.031 4.031 24 C -0.114 4.114 25 C -0.107 4.107 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.012 4.012 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.062 0.938 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.168 0.832 43 H 0.179 0.821 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.761 -21.689 9.313 25.543 hybrid contribution 0.761 0.924 1.028 1.578 sum -9.000 -20.765 10.341 24.882 Atomic orbital electron populations 1.21830 0.79910 1.03484 1.01520 1.47887 1.06811 1.06394 1.73429 1.21869 0.97315 0.82394 0.99140 1.22405 0.90375 0.91112 0.93565 0.94023 1.23766 0.96300 1.00028 1.00644 1.21928 0.85156 0.98563 0.91128 1.45711 1.28315 1.16105 1.42500 1.18980 0.99867 1.04504 1.10791 0.90141 1.24797 0.99120 0.98283 0.98231 1.69854 1.40867 1.17761 1.28286 0.86074 0.82966 0.78507 0.78461 1.20397 1.21723 1.21716 1.20375 0.88097 0.84829 0.77258 1.90782 1.14025 1.86902 1.48078 1.20644 0.97410 0.90586 1.05219 1.20033 0.98826 0.97026 0.93890 1.22014 0.94713 0.91846 0.96931 1.67414 1.07033 1.12477 1.32142 1.23160 0.95758 0.97354 0.86801 1.19008 0.98912 0.97562 0.95902 1.20968 0.98525 0.99596 0.91630 1.20914 0.98480 0.96477 0.98108 1.20979 0.95879 0.96208 0.98751 1.20944 1.00470 0.99427 0.91602 1.17950 0.95080 0.94450 0.93755 0.92820 0.90278 0.91420 0.90552 0.89910 0.92793 0.90562 0.91600 0.95780 0.93772 0.87533 0.87879 0.83153 0.82080 0.84984 0.85636 0.85612 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.23 59.85 0.61 1.30 16 2 N -0.61 -8.55 2.87 -181.58 -0.52 -9.08 16 3 C 0.12 2.10 5.37 -4.04 -0.02 2.08 16 4 C 0.13 2.80 4.31 -72.39 -0.31 2.49 16 5 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.17 -3.10 7.12 -26.22 -0.19 -3.29 16 7 C 0.16 3.79 7.28 -8.50 -0.06 3.73 16 8 N -0.60 -15.77 3.65 -176.98 -0.65 -16.42 16 9 C -0.21 -6.19 10.55 -15.06 -0.16 -6.35 16 10 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 12 N -0.92 -28.02 11.64 55.49 0.65 -27.37 16 13 Si 0.91 22.91 29.55 -169.99 -5.02 17.88 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 C 0.51 7.61 7.65 -10.99 -0.08 7.53 16 18 O -0.52 -10.64 15.59 5.55 0.09 -10.55 16 19 C -0.10 -1.01 3.98 -29.03 -0.12 -1.13 16 20 C -0.10 -1.19 4.40 -104.44 -0.46 -1.65 16 21 C 0.09 1.14 10.72 -17.96 -0.19 0.95 16 22 N -0.48 -6.49 10.30 -13.16 -0.14 -6.63 16 23 C 0.14 1.60 11.05 -16.98 -0.19 1.41 16 24 C -0.11 -1.30 5.74 -106.86 -0.61 -1.92 16 25 C -0.09 -0.80 9.81 -39.52 -0.39 -1.18 16 26 C -0.12 -1.05 9.94 -39.90 -0.40 -1.45 16 27 C -0.10 -0.93 9.95 -39.89 -0.40 -1.33 16 28 C -0.11 -1.18 9.33 -39.56 -0.37 -1.55 16 29 C -0.01 -0.09 5.75 -106.81 -0.61 -0.71 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.73 7.16 -51.93 -0.37 0.36 16 32 H 0.07 0.45 6.48 -51.93 -0.34 0.11 16 33 H 0.08 1.30 7.83 -51.93 -0.41 0.89 16 34 H 0.08 1.78 7.36 -51.93 -0.38 1.40 16 35 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 36 H 0.08 1.31 7.93 -51.93 -0.41 0.90 16 37 H 0.07 1.72 7.36 -51.93 -0.38 1.34 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.11 0.81 7.17 -51.93 -0.37 0.44 16 41 H 0.10 0.81 6.84 -51.93 -0.35 0.45 16 42 H 0.15 1.66 8.05 -52.48 -0.42 1.24 16 43 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 47 H 0.13 1.26 6.65 -52.48 -0.35 0.91 16 LS Contribution 387.37 15.07 5.84 5.84 Total: -1.00 -37.36 387.37 -10.52 -47.88 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.72 Total: -0.16 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.04 Total: -1.39 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.66 Total: -59.49 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.36 -10.52 -47.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235534264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.818 kcal (2) G-P(sol) polarization free energy of solvation -37.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds