Wall clock time and date at job start Sat Apr 11 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 119.99917 * 2 1 4 4 C 1.53001 * 109.47283 * 274.72929 * 3 2 1 5 5 H 1.09006 * 112.73856 * 316.17664 * 4 3 2 6 6 C 1.53492 * 113.47173 * 87.00238 * 4 3 2 7 7 C 1.53500 * 83.34617 * 140.85063 * 6 4 3 8 8 N 1.47068 * 87.98367 * 333.93261 * 7 6 4 9 9 C 1.36939 * 136.05699 * 207.15903 * 8 7 6 10 10 H 1.07999 * 119.99977 * 174.73758 * 9 8 7 11 11 C 1.38810 * 119.99790 * 354.73522 * 9 8 7 12 12 N 1.31622 * 120.00180 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99749 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46895 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46850 * 120.00037 * 13 11 9 16 16 H 1.48498 * 109.46915 * 240.00009 * 13 11 9 17 17 C 1.34774 * 120.00266 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00233 * 175.01566 * 17 2 1 19 19 C 1.50695 * 119.99732 * 355.02125 * 17 2 1 20 20 C 1.50708 * 109.47297 * 179.97438 * 19 17 2 21 21 C 1.36208 * 120.66775 * 265.00025 * 20 19 17 22 22 N 1.32571 * 121.87626 * 179.97438 * 21 20 19 23 23 C 1.31272 * 122.77420 * 359.97438 * 22 21 20 24 24 C 1.40384 * 119.88448 * 0.02562 * 23 22 21 25 25 C 1.40385 * 122.07950 * 179.97438 * 24 23 22 26 26 C 1.36172 * 119.51395 * 180.02562 * 25 24 23 27 27 C 1.39384 * 121.08775 * 359.95997 * 26 25 24 28 28 C 1.36208 * 121.02567 * 0.03919 * 27 26 25 29 29 C 1.40234 * 119.48425 * 359.97438 * 28 27 26 30 30 H 1.08992 * 109.47404 * 269.99866 * 1 2 3 31 31 H 1.09005 * 109.47123 * 30.00105 * 1 2 3 32 32 H 1.09003 * 109.47199 * 149.99720 * 1 2 3 33 33 H 1.09004 * 109.46959 * 34.72480 * 3 2 1 34 34 H 1.08997 * 109.47536 * 154.72379 * 3 2 1 35 35 H 1.09007 * 114.20465 * 254.43528 * 6 4 3 36 36 H 1.08994 * 114.20749 * 27.25729 * 6 4 3 37 37 H 1.09001 * 113.46498 * 219.15603 * 7 6 4 38 38 H 1.08998 * 113.52284 * 88.71873 * 7 6 4 39 39 H 0.96997 * 119.99687 * 179.97438 * 12 11 9 40 40 H 1.09003 * 109.47789 * 60.00253 * 19 17 2 41 41 H 1.09001 * 109.47031 * 299.99808 * 19 17 2 42 42 H 1.08004 * 119.05944 * 0.25205 * 21 20 19 43 43 H 1.08007 * 120.05882 * 179.97438 * 23 22 21 44 44 H 1.07996 * 120.24453 * 0.02562 * 25 24 23 45 45 H 1.07996 * 119.45749 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.48124 * 180.02562 * 27 26 25 47 47 H 1.08006 * 120.25709 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3495 1.7699 -1.4376 5 1 2.6330 0.9788 -2.1318 6 6 1.1603 2.6116 -1.9205 7 6 2.2565 3.4515 -2.5907 8 7 3.1831 2.9761 -1.5523 9 6 4.3209 3.4488 -0.9547 10 1 4.7647 2.9063 -0.1330 11 6 4.9038 4.6254 -1.4049 12 7 4.3627 5.2869 -2.4059 13 14 6.4563 5.2700 -0.5900 14 1 6.8608 4.3490 0.5024 15 1 7.5455 5.3526 -1.5960 16 1 6.1969 6.6203 -0.0292 17 6 2.1389 -1.1671 -0.0005 18 8 3.3483 -1.1691 -0.0918 19 6 1.3897 -2.4698 0.1122 20 6 2.3681 -3.6159 0.0871 21 6 2.6536 -4.2602 -1.0784 22 7 3.5105 -5.2706 -1.1281 23 6 4.1413 -5.7201 -0.0682 24 6 3.9179 -5.1250 1.1835 25 6 4.5669 -5.5688 2.3465 26 6 4.3107 -4.9536 3.5340 27 6 3.4147 -3.8890 3.6144 28 6 2.7668 -3.4315 2.5070 29 6 3.0054 -4.0408 1.2667 30 1 -0.3634 0.0000 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6476 2.0057 0.5854 34 1 3.1839 1.1188 0.4388 35 1 0.5022 2.0957 -2.6199 36 1 0.6256 3.1284 -1.1237 37 1 2.0690 4.5244 -2.5469 38 1 2.5151 3.1095 -3.5928 39 1 4.7698 6.1093 -2.7202 40 1 0.6980 -2.5648 -0.7249 41 1 0.8318 -2.4882 1.0484 42 1 2.1715 -3.9359 -1.9889 43 1 4.8303 -6.5468 -0.1589 44 1 5.2642 -6.3922 2.2998 45 1 4.8102 -5.2961 4.4282 46 1 3.2312 -3.4197 4.5697 47 1 2.0747 -2.6058 2.5837 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235534264.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:59 Heat of formation + Delta-G solvation = 61.109605 kcal Electronic energy + Delta-G solvation = -28934.812843 eV Core-core repulsion = 25083.694983 eV Total energy + Delta-G solvation = -3851.117860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02845 -40.90778 -39.67480 -38.25123 -36.45580 -35.17985 -34.30074 -32.17032 -31.47495 -30.31227 -29.93498 -28.57547 -27.11563 -25.45404 -24.96418 -24.52976 -23.89343 -22.32563 -21.09108 -20.09381 -18.92417 -18.75266 -18.54189 -18.01887 -17.48971 -17.24829 -16.85411 -16.43762 -15.90108 -15.75858 -15.43167 -15.31721 -15.16752 -14.72564 -14.62051 -14.29599 -14.22509 -13.96131 -13.65998 -13.61438 -13.47290 -13.14936 -13.08233 -12.99954 -12.91375 -12.69071 -12.67363 -12.45911 -12.23166 -11.95217 -11.86257 -11.62645 -11.25763 -11.15305 -10.90461 -10.71064 -10.46605 -10.02236 -9.58910 -8.98120 -8.93452 -7.95656 -5.27981 -0.60521 -0.04893 0.93457 1.39366 1.41572 1.51639 1.64126 1.99018 2.17548 2.45099 3.08967 3.25606 3.36973 3.46589 3.57663 3.68538 3.76602 3.79467 3.85014 3.95982 4.05940 4.20292 4.24154 4.30632 4.32484 4.37816 4.40721 4.52527 4.56638 4.67116 4.71708 4.79634 4.85282 4.93675 4.95232 4.98153 5.03588 5.09351 5.11030 5.14007 5.20940 5.46218 5.46453 5.49952 5.52442 5.66954 5.73504 5.91537 5.93545 6.47068 6.88946 6.98587 7.22579 7.56401 8.58137 9.22697 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012820 B = 0.002855 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.555940 B = 9804.821899 C =10656.615097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.607 5.607 3 C 0.132 3.868 4 C 0.133 3.867 5 H 0.021 0.979 6 C -0.125 4.125 7 C 0.147 3.853 8 N -0.632 5.632 9 C -0.224 4.224 10 H 0.074 0.926 11 C -0.065 4.065 12 N -0.952 5.952 13 Si 0.975 3.025 14 H -0.271 1.271 15 H -0.293 1.293 16 H -0.283 1.283 17 C 0.504 3.496 18 O -0.588 6.588 19 C -0.084 4.084 20 C -0.109 4.109 21 C 0.066 3.934 22 N -0.514 5.514 23 C 0.136 3.864 24 C -0.134 4.134 25 C -0.089 4.089 26 C -0.125 4.125 27 C -0.099 4.099 28 C -0.129 4.129 29 C -0.032 4.032 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.038 0.962 38 H 0.007 0.993 39 H 0.249 0.751 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.159 0.841 43 H 0.191 0.809 44 H 0.162 0.838 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.536 -23.181 12.275 29.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.339 5.339 3 C 0.008 3.992 4 C 0.026 3.974 5 H 0.038 0.962 6 C -0.162 4.162 7 C 0.022 3.978 8 N -0.358 5.358 9 C -0.353 4.353 10 H 0.092 0.908 11 C -0.258 4.258 12 N -0.601 5.601 13 Si 0.803 3.197 14 H -0.196 1.196 15 H -0.220 1.220 16 H -0.209 1.209 17 C 0.293 3.707 18 O -0.468 6.468 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.077 4.077 22 N -0.222 5.222 23 C -0.035 4.035 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.143 4.143 27 C -0.118 4.118 28 C -0.147 4.147 29 C -0.037 4.037 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.058 0.942 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.176 0.824 43 H 0.208 0.792 44 H 0.180 0.820 45 H 0.174 0.826 46 H 0.167 0.833 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.612 -23.245 11.408 28.378 hybrid contribution 1.332 1.315 0.424 1.919 sum -10.280 -21.930 11.832 26.956 Atomic orbital electron populations 1.22235 0.76188 1.05311 1.03855 1.47938 1.08873 1.04539 1.72592 1.21391 0.96274 0.84779 0.96793 1.22490 0.90391 0.89497 0.95025 0.96198 1.23521 0.94736 0.97330 1.00659 1.21985 0.87475 0.97831 0.90533 1.46121 1.28222 1.18558 1.42923 1.19230 1.00817 1.04495 1.10711 0.90849 1.25606 1.02229 0.98767 0.99219 1.70020 1.42201 1.18055 1.29785 0.85068 0.79074 0.78044 0.77542 1.19553 1.22002 1.20946 1.21201 0.87559 0.86291 0.75622 1.90755 1.17100 1.87854 1.51051 1.20670 0.96861 0.86786 1.08084 1.20256 0.99495 0.97572 0.93800 1.22264 0.95341 0.92429 0.97650 1.67409 1.08121 1.13403 1.33250 1.23695 0.95542 0.97746 0.86492 1.19348 0.99436 0.97823 0.96960 1.21360 0.98387 1.00214 0.90902 1.21336 0.97981 0.95844 0.99114 1.21383 0.95082 0.96065 0.99251 1.21125 1.01714 1.00164 0.91729 1.18311 0.95714 0.95216 0.94485 0.90233 0.89871 0.88261 0.89023 0.94181 0.88674 0.88489 0.94337 0.97508 0.94187 0.84323 0.84838 0.82378 0.79193 0.81998 0.82582 0.83306 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.90 10.23 127.77 1.31 2.21 16 2 N -0.61 -15.92 2.87 -846.77 -2.43 -18.35 16 3 C 0.13 4.76 5.37 86.38 0.46 5.23 16 4 C 0.13 5.59 4.31 41.79 0.18 5.77 16 5 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 6 C -0.12 -4.31 7.12 30.93 0.22 -4.09 16 7 C 0.15 7.20 7.28 83.18 0.61 7.81 16 8 N -0.63 -34.08 3.65 -713.83 -2.60 -36.69 16 9 C -0.22 -13.38 10.55 84.03 0.89 -12.50 16 10 H 0.07 4.35 7.83 -2.91 -0.02 4.33 16 11 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 12 N -0.95 -59.69 11.64 21.65 0.25 -59.43 16 13 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 16 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 17 C 0.50 14.79 7.65 87.66 0.67 15.46 16 18 O -0.59 -24.85 15.59 -3.04 -0.05 -24.90 16 19 C -0.08 -1.57 3.98 29.10 0.12 -1.46 16 20 C -0.11 -2.69 4.40 -19.75 -0.09 -2.78 16 21 C 0.07 1.73 10.72 84.11 0.90 2.63 16 22 N -0.51 -14.06 10.30 -195.54 -2.01 -16.07 16 23 C 0.14 3.07 11.05 85.30 0.94 4.01 16 24 C -0.13 -3.04 5.74 -21.31 -0.12 -3.16 16 25 C -0.09 -1.46 9.81 22.31 0.22 -1.24 16 26 C -0.13 -1.85 9.94 22.06 0.22 -1.63 16 27 C -0.10 -1.67 9.95 22.07 0.22 -1.45 16 28 C -0.13 -2.75 9.33 22.28 0.21 -2.54 16 29 C -0.03 -0.80 5.75 -21.28 -0.12 -0.93 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 1.13 7.16 -2.38 -0.02 1.12 16 32 H 0.10 0.79 6.48 -2.39 -0.02 0.77 16 33 H 0.09 2.99 7.83 -2.39 -0.02 2.97 16 34 H 0.04 1.79 7.36 -2.39 -0.02 1.77 16 35 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.10 3.01 7.93 -2.39 -0.02 2.99 16 37 H 0.04 2.06 7.36 -2.39 -0.02 2.05 16 38 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.14 1.65 7.17 -2.39 -0.02 1.64 16 41 H 0.13 1.66 6.84 -2.39 -0.02 1.64 16 42 H 0.16 3.57 8.05 -2.91 -0.02 3.54 16 43 H 0.19 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 45 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 47 H 0.13 2.47 6.65 -2.91 -0.02 2.45 16 Total: -1.00 -88.23 387.37 3.45 -84.78 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.97 Total: 12.48 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 7.30 Total: 7.90 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -6.80 Total: -130.54 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.05 Total: -24.90 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -88.23 3.45 -84.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235534264.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.891 kcal (2) G-P(sol) polarization free energy of solvation -88.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds