Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46954 * 110.99531 * 2 1 4 4 C 1.53054 * 109.36056 * 183.19014 * 3 2 1 5 5 N 1.46954 * 109.36404 * 301.59863 * 4 3 2 6 6 C 1.38935 * 111.00231 * 183.19103 * 5 4 3 7 7 C 1.39248 * 119.57407 * 180.02562 * 6 5 4 8 8 C 1.38047 * 119.23202 * 179.72062 * 7 6 5 9 9 C 1.40023 * 118.39626 * 0.49401 * 8 7 6 10 10 C 1.48263 * 120.46386 * 179.77856 * 9 8 7 11 11 C 1.39302 * 120.16134 * 310.02607 * 10 9 8 12 12 C 1.38010 * 119.94295 * 180.25346 * 11 10 9 13 13 C 1.38443 * 120.27126 * 359.71646 * 12 11 10 14 14 C 1.38116 * 120.32737 * 0.02562 * 13 12 11 15 15 C 1.38746 * 120.05065 * 359.97438 * 14 13 12 16 16 O 1.35673 * 120.13669 * 179.97438 * 15 14 13 17 17 C 1.34814 * 117.00080 * 5.60316 * 16 15 14 18 18 H 1.08000 * 119.99780 * 354.92833 * 17 16 15 19 19 C 1.38638 * 120.00267 * 174.92447 * 17 16 15 20 20 N 1.31564 * 119.99832 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99720 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47078 * 90.00076 * 21 19 17 23 23 H 1.48500 * 109.47083 * 209.99553 * 21 19 17 24 24 H 1.48492 * 109.47195 * 329.99726 * 21 19 17 25 25 C 1.39223 * 119.07554 * 359.51004 * 9 8 7 26 26 N 1.31815 * 120.68112 * 0.24446 * 25 9 8 27 27 C 1.46953 * 110.88377 * 59.32046 * 5 4 3 28 28 C 1.46957 * 110.99882 * 123.79704 * 2 1 3 29 29 H 1.09000 * 109.47334 * 60.00293 * 1 2 3 30 30 H 1.09007 * 109.47113 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47253 * 299.99962 * 1 2 3 32 32 H 1.08994 * 109.49535 * 63.22366 * 3 2 1 33 33 H 1.08995 * 109.51014 * 303.16354 * 3 2 1 34 34 H 1.08998 * 109.48905 * 181.63303 * 4 3 2 35 35 H 1.08998 * 109.49019 * 61.56260 * 4 3 2 36 36 H 1.08007 * 120.38363 * 359.97438 * 7 6 5 37 37 H 1.07997 * 120.80595 * 180.28022 * 8 7 6 38 38 H 1.08003 * 120.02326 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.86243 * 179.74523 * 12 11 10 40 40 H 1.08004 * 119.83722 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.97671 * 180.02562 * 14 13 12 42 42 H 0.97003 * 119.99664 * 180.02562 * 20 19 17 43 43 H 1.08004 * 119.65840 * 180.27623 * 25 9 8 44 44 H 1.09003 * 109.49023 * 60.64680 * 27 5 4 45 45 H 1.08999 * 109.49484 * 180.71185 * 27 5 4 46 46 H 1.08998 * 109.48945 * 296.77854 * 28 2 1 47 47 H 1.08998 * 109.48948 * 56.82440 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0500 0.5659 1.0597 6 6 5.4394 0.5660 1.0597 7 6 6.1266 -0.1082 2.0658 8 6 7.5071 -0.1085 2.0558 9 6 8.1656 0.5835 1.0320 10 6 9.6470 0.6173 0.9797 11 6 10.3796 0.9635 2.1128 12 6 11.7581 0.9987 2.0576 13 6 12.4177 0.6854 0.8814 14 6 11.7027 0.3354 -0.2472 15 6 10.3164 0.2957 -0.2069 16 8 9.6122 -0.0473 -1.3147 17 6 10.3197 -0.4506 -2.3890 18 1 11.3988 -0.4117 -2.3706 19 6 9.6620 -0.9155 -3.5175 20 7 10.3524 -1.3086 -4.5661 21 14 7.7954 -0.9822 -3.5495 22 1 7.2631 0.3018 -4.0722 23 1 7.3549 -2.0951 -4.4285 24 1 7.2844 -1.2064 -2.1734 25 6 7.4101 1.2345 0.0606 26 7 6.0929 1.2068 0.1026 27 6 3.5235 -0.8060 1.0598 28 6 1.9956 -0.7632 1.1401 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6937 1.8774 0.9173 33 1 1.6013 1.9132 -0.8600 34 1 3.9177 2.3449 -0.0513 35 1 3.8252 0.8479 -1.0106 36 1 5.5859 -0.6283 2.8427 37 1 8.0656 -0.6269 2.8210 38 1 9.8689 1.2086 3.0324 39 1 12.3247 1.2713 2.9358 40 1 13.4968 0.7148 0.8463 41 1 12.2230 0.0917 -1.1616 42 1 9.8922 -1.6335 -5.3558 43 1 7.9084 1.7673 -0.7359 44 1 3.8253 -1.3115 0.1424 45 1 3.9178 -1.3470 1.9200 46 1 1.6937 -0.2820 2.0704 47 1 1.6010 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235972539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = 62.535737 kcal Electronic energy + Delta-G solvation = -29174.188160 eV Core-core repulsion = 25323.132141 eV Total energy + Delta-G solvation = -3851.056018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.60218 -39.42733 -38.51181 -36.63535 -35.52280 -32.69104 -32.44163 -31.59149 -30.91951 -29.49393 -29.03700 -27.15862 -25.36236 -24.38426 -24.27055 -22.64267 -22.56779 -21.26220 -20.78246 -19.93045 -17.93668 -17.66581 -17.33073 -16.31532 -15.72186 -15.48483 -15.26060 -15.00326 -14.92885 -14.72727 -14.39922 -14.28495 -14.03036 -13.79763 -13.71002 -13.43523 -13.06331 -12.85051 -12.64910 -12.42311 -12.36520 -12.24635 -12.07133 -11.92605 -11.51009 -11.41746 -11.15154 -11.07444 -10.95757 -10.87496 -10.74516 -10.22732 -9.76837 -9.54354 -9.44651 -9.22009 -8.92905 -8.61711 -8.40251 -7.78972 -7.26377 -6.48119 -4.14496 1.25147 1.61407 2.11561 2.21099 3.21324 3.26014 3.41598 3.52263 3.67306 4.13536 4.20089 4.42493 4.57320 4.71653 4.73818 4.79191 4.95361 5.04119 5.08718 5.15534 5.16822 5.26095 5.28530 5.31981 5.36295 5.39576 5.47724 5.52459 5.56269 5.58043 5.69494 5.74880 5.85175 5.88616 6.03961 6.06785 6.15036 6.21864 6.43590 6.48270 6.66601 6.68978 6.70422 6.78233 6.84801 7.04459 7.08470 7.21519 7.35224 7.51957 7.71470 7.95860 8.32604 8.87037 9.47295 10.58861 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011525 B = 0.003725 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.818653 B = 7514.051180 C = 9451.400378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.055 3.945 4 C 0.068 3.932 5 N -0.479 5.479 6 C 0.292 3.708 7 C -0.186 4.186 8 C -0.054 4.054 9 C -0.082 4.082 10 C -0.129 4.129 11 C -0.061 4.061 12 C -0.206 4.206 13 C -0.070 4.070 14 C -0.220 4.220 15 C 0.172 3.828 16 O -0.206 6.206 17 C -0.390 4.390 18 H 0.108 0.892 19 C 0.069 3.931 20 N -0.875 5.875 21 Si 0.899 3.101 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.259 1.259 25 C 0.149 3.851 26 N -0.516 5.516 27 C 0.059 3.941 28 C 0.058 3.942 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.280 0.720 43 H 0.157 0.843 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 2.654 13.172 18.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.074 4.074 4 C -0.059 4.059 5 N -0.197 5.197 6 C 0.061 3.939 7 C -0.208 4.208 8 C -0.079 4.079 9 C -0.085 4.085 10 C -0.131 4.131 11 C -0.080 4.080 12 C -0.225 4.225 13 C -0.088 4.088 14 C -0.239 4.239 15 C 0.118 3.882 16 O -0.110 6.110 17 C -0.466 4.466 18 H 0.125 0.875 19 C -0.135 4.135 20 N -0.512 5.512 21 Si 0.724 3.276 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.009 4.009 26 N -0.229 5.229 27 C -0.067 4.067 28 C -0.070 4.070 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.153 0.847 42 H 0.091 0.909 43 H 0.174 0.826 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.177 2.970 12.214 18.947 hybrid contribution -0.074 -0.494 0.463 0.681 sum -14.251 2.476 12.677 19.234 Atomic orbital electron populations 1.22339 0.87040 1.02079 1.00713 1.62153 1.07930 1.14313 1.42846 1.22277 0.94896 0.89024 1.01159 1.22028 0.92552 0.99560 0.91763 1.59378 1.03547 1.14206 1.42588 1.19701 0.89019 0.94131 0.91011 1.21323 0.94420 1.04563 1.00527 1.21470 0.93402 0.95767 0.97305 1.19493 0.93367 0.99196 0.96431 1.17671 0.90369 1.12474 0.92596 1.20698 0.93646 0.97729 0.95884 1.20592 0.93998 1.09732 0.98184 1.20889 0.98882 0.96482 0.92570 1.21244 0.93580 1.08861 1.00182 1.19064 0.90211 0.92693 0.86200 1.83576 1.35716 1.72864 1.18830 1.20771 0.93056 1.42937 0.89809 0.87464 1.24420 1.00082 0.94963 0.94025 1.69642 1.36628 1.40692 1.04236 0.86273 0.83639 0.78365 0.79316 1.19526 1.20872 1.18300 1.22688 0.87629 0.94443 0.96142 1.67523 1.10723 1.21649 1.22978 1.22329 0.94373 0.87583 1.02449 1.22176 0.93957 0.98799 0.92053 0.91249 0.91350 0.95623 0.94028 0.89893 0.89083 0.92271 0.85203 0.84884 0.86766 0.87214 0.87083 0.84682 0.90943 0.82551 0.92735 0.89403 0.93773 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.07 0.58 0.79 16 2 N -0.55 -5.93 4.97 -242.76 -1.21 -7.14 16 3 C 0.05 0.60 5.62 -3.77 -0.02 0.58 16 4 C 0.07 0.94 4.78 -3.77 -0.02 0.92 16 5 N -0.48 -6.76 4.73 -173.02 -0.82 -7.58 16 6 C 0.29 4.82 6.41 -155.01 -0.99 3.83 16 7 C -0.19 -2.75 9.19 -39.28 -0.36 -3.11 16 8 C -0.05 -0.84 9.67 -38.98 -0.38 -1.22 16 9 C -0.08 -1.52 5.29 -104.74 -0.55 -2.07 16 10 C -0.13 -2.48 5.51 -104.73 -0.58 -3.06 16 11 C -0.06 -1.00 9.53 -39.27 -0.37 -1.38 16 12 C -0.21 -3.27 10.03 -39.59 -0.40 -3.66 16 13 C -0.07 -1.20 10.03 -39.55 -0.40 -1.60 16 14 C -0.22 -4.54 9.16 -39.44 -0.36 -4.90 16 15 C 0.17 3.80 6.56 -38.74 -0.25 3.55 16 16 O -0.21 -5.20 6.95 0.33 0.00 -5.20 16 17 C -0.39 -10.69 9.95 30.88 0.31 -10.38 16 18 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 19 C 0.07 1.92 5.49 -17.52 -0.10 1.83 16 20 N -0.87 -25.01 13.96 55.48 0.77 -24.24 16 21 Si 0.90 22.19 28.62 -169.99 -4.86 17.33 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.15 2.92 9.96 -17.19 -0.17 2.75 16 26 N -0.52 -9.71 8.67 -12.15 -0.11 -9.82 16 27 C 0.06 0.72 5.36 -3.77 -0.02 0.70 16 28 C 0.06 0.59 5.62 -3.77 -0.02 0.56 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.29 7.82 -51.93 -0.41 0.89 16 35 H 0.06 0.95 8.05 -51.93 -0.42 0.54 16 36 H 0.13 1.54 7.16 -52.48 -0.38 1.16 16 37 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 38 H 0.11 1.57 8.05 -52.48 -0.42 1.14 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 41 H 0.14 2.92 5.64 -52.49 -0.30 2.63 16 42 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.16 3.18 7.68 -52.48 -0.40 2.78 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 0.92 6.77 -51.93 -0.35 0.57 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.08 0.71 8.13 -51.93 -0.42 0.28 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -30.19 381.19 -11.32 -41.52 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.74 Total: 5.24 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -4.11 Total: -15.87 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -1.35 Total: -48.77 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.86 Total: 17.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.19 -11.32 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235972539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.054 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds