Wall clock time and date at job start Sat Apr 11 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35875 * 117.00200 * 2 1 4 4 C 1.39505 * 119.77143 * 0.02562 * 3 2 1 5 5 C 1.37882 * 120.63093 * 179.97438 * 4 3 2 6 6 C 1.39255 * 120.15690 * 359.97438 * 5 4 3 7 7 C 1.47737 * 120.22624 * 180.27470 * 6 5 4 8 8 C 1.40311 * 120.48167 * 309.45106 * 7 6 5 9 9 C 1.36920 * 118.48906 * 179.73060 * 8 7 6 10 10 C 1.39356 * 119.38804 * 0.54425 * 9 8 7 11 11 N 1.38756 * 119.53297 * 179.74020 * 10 9 8 12 12 C 1.46960 * 110.99665 * 56.17643 * 11 10 9 13 13 C 1.53055 * 109.36241 * 183.18678 * 12 11 10 14 14 N 1.46954 * 109.36509 * 301.60383 * 13 12 11 15 15 C 1.46950 * 110.88199 * 59.31739 * 14 13 12 16 16 C 1.46954 * 111.00241 * 179.97438 * 11 10 9 17 17 N 1.32537 * 120.93791 * 359.71754 * 10 9 8 18 18 C 1.31751 * 121.63993 * 0.02562 * 17 10 9 19 19 C 1.41945 * 119.54565 * 0.02562 * 6 5 4 20 20 C 1.40847 * 120.30714 * 180.02562 * 19 6 5 21 21 H 1.08006 * 120.00053 * 333.57203 * 20 19 6 22 22 C 1.40000 * 120.00258 * 153.56793 * 20 19 6 23 23 N 1.30816 * 120.00017 * 343.65351 * 22 20 19 24 24 Si 1.86800 * 120.00276 * 163.65063 * 22 20 19 25 25 H 1.48499 * 109.46873 * 94.62419 * 24 22 20 26 26 H 1.48498 * 109.46958 * 214.61934 * 24 22 20 27 27 H 1.48496 * 109.47055 * 334.62236 * 24 22 20 28 28 C 1.37879 * 119.77353 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47122 * 299.99554 * 1 2 3 30 30 H 1.08997 * 109.47071 * 60.00312 * 1 2 3 31 31 H 1.09004 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.07995 * 119.68692 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.92395 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.75583 * 359.97347 * 8 7 6 35 35 H 1.08003 * 120.30851 * 180.25894 * 9 8 7 36 36 H 1.08997 * 109.48957 * 303.15531 * 12 11 10 37 37 H 1.08999 * 109.49048 * 63.22173 * 12 11 10 38 38 H 1.08999 * 109.48938 * 181.62936 * 13 12 11 39 39 H 1.09000 * 109.50433 * 61.57509 * 13 12 11 40 40 H 1.00907 * 110.99855 * 295.44670 * 14 13 12 41 41 H 1.09008 * 109.48988 * 180.71034 * 15 14 13 42 42 H 1.08996 * 109.50967 * 60.66418 * 15 14 13 43 43 H 1.08997 * 109.49046 * 296.78413 * 16 11 10 44 44 H 1.09003 * 109.48474 * 56.84657 * 16 11 10 45 45 H 1.07996 * 119.75064 * 179.97438 * 18 17 10 46 46 H 0.96998 * 120.00323 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.08828 * 0.03705 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2815 2.3776 0.0005 5 6 1.8890 3.6154 0.0011 6 6 3.2781 3.7129 0.0016 7 6 3.9307 5.0383 0.0083 8 6 3.5557 6.0209 -0.9205 9 6 4.1833 7.2369 -0.8740 10 6 5.1760 7.4581 0.0788 11 7 5.8178 8.6875 0.1251 12 6 4.8496 9.7811 0.2875 13 6 5.5878 11.1215 0.2542 14 7 6.5948 11.1499 1.3242 15 6 7.5628 10.0563 1.1617 16 6 6.8246 8.7161 1.1951 17 7 5.5155 6.5111 0.9416 18 6 4.9336 5.3291 0.9349 19 6 4.0628 2.5300 0.0011 20 6 5.4690 2.6100 0.0022 21 1 5.9610 3.4772 -0.4130 22 6 6.2292 1.5653 0.5414 23 7 5.6636 0.6790 1.3198 24 14 8.0510 1.4368 0.1494 25 1 8.8360 2.0990 1.2220 26 1 8.4391 0.0060 0.0634 27 1 8.3262 2.1032 -1.1488 28 6 3.4231 1.2773 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2036 2.3109 0.0005 33 1 1.2861 4.5114 0.0019 34 1 2.7868 5.8239 -1.6528 35 1 3.9148 8.0159 -1.5722 36 1 4.1222 9.7463 -0.5234 37 1 4.3355 9.6728 1.2425 38 1 4.8754 11.9328 0.4035 39 1 6.0795 11.2423 -0.7111 40 1 6.1578 11.1141 2.2330 41 1 8.2904 10.0911 1.9726 42 1 8.0773 10.1645 0.2069 43 1 6.3330 8.5956 2.1604 44 1 7.5371 7.9047 1.0457 45 1 5.2345 4.5796 1.6518 46 1 6.1903 -0.0447 1.6937 47 1 4.0090 0.3701 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240488626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:21 Heat of formation + Delta-G solvation = 32.234425 kcal Electronic energy + Delta-G solvation = -28917.828509 eV Core-core repulsion = 25065.458528 eV Total energy + Delta-G solvation = -3852.369982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.40370 -38.94085 -38.33140 -36.47700 -34.33955 -33.68980 -32.17595 -30.99811 -30.56286 -29.79587 -28.07180 -26.51483 -25.41524 -25.04741 -24.04132 -22.35814 -22.09698 -21.05029 -20.52103 -19.84654 -17.84942 -17.47180 -16.27008 -16.00974 -15.74485 -15.33778 -15.15874 -14.92620 -14.87647 -14.78549 -14.70707 -14.23528 -14.02715 -13.42735 -13.23578 -13.09522 -12.84298 -12.52915 -12.38806 -12.20021 -12.10439 -11.85921 -11.49543 -11.48980 -11.35986 -11.27085 -11.19363 -11.12738 -10.95888 -10.55961 -10.18565 -10.02556 -9.72812 -9.44732 -9.28251 -9.23518 -8.87173 -8.60525 -7.73249 -7.61007 -7.00398 -6.68073 -4.53311 1.61752 1.91077 2.67946 2.89851 3.02926 3.07079 3.14162 3.64227 3.84655 4.10758 4.23325 4.40135 4.49829 4.75214 4.91900 5.01454 5.10575 5.17729 5.27055 5.40595 5.44948 5.49521 5.59029 5.60646 5.63809 5.68015 5.74326 5.77215 5.83943 5.87065 5.98803 6.02352 6.10013 6.23649 6.41684 6.51016 6.70465 6.71678 6.80329 6.90748 6.98876 7.04606 7.13837 7.18836 7.30152 7.54483 7.57865 7.69712 7.85607 7.92248 8.25113 8.58567 8.62519 8.70878 8.78841 10.01380 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003330 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.018139 B = 8406.391555 C =10363.046301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.316 4.316 5 C -0.039 4.039 6 C -0.205 4.205 7 C -0.042 4.042 8 C -0.074 4.074 9 C -0.182 4.182 10 C 0.269 3.731 11 N -0.472 5.472 12 C 0.021 3.979 13 C 0.060 3.940 14 N -0.688 5.688 15 C 0.055 3.945 16 C 0.031 3.969 17 N -0.519 5.519 18 C 0.136 3.864 19 C 0.158 3.842 20 C -0.448 4.448 21 H 0.084 0.916 22 C 0.079 3.921 23 N -0.776 5.776 24 Si 0.905 3.095 25 H -0.267 1.267 26 H -0.273 1.273 27 H -0.259 1.259 28 C -0.192 4.192 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.338 0.662 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.163 0.837 46 H 0.285 0.715 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 11.511 -0.718 11.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.336 4.336 5 C -0.057 4.057 6 C -0.207 4.207 7 C -0.045 4.045 8 C -0.100 4.100 9 C -0.205 4.205 10 C 0.038 3.962 11 N -0.191 5.191 12 C -0.108 4.108 13 C -0.070 4.070 14 N -0.316 5.316 15 C -0.075 4.075 16 C -0.098 4.098 17 N -0.232 5.232 18 C -0.021 4.021 19 C 0.155 3.845 20 C -0.476 4.476 21 H 0.102 0.898 22 C -0.142 4.142 23 N -0.400 5.400 24 Si 0.728 3.272 25 H -0.192 1.192 26 H -0.198 1.198 27 H -0.183 1.183 28 C -0.212 4.212 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.155 0.845 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.180 0.820 46 H 0.096 0.904 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.707 11.907 -0.712 11.950 hybrid contribution -1.116 -1.267 0.156 1.696 sum -1.824 10.640 -0.556 10.810 Atomic orbital electron populations 1.22767 0.80696 1.01938 1.00533 1.86011 1.19568 1.29055 1.89682 1.19007 0.92459 0.82515 0.96912 1.20350 0.97388 0.92453 1.23421 1.20314 0.93181 0.95259 0.96942 1.18366 0.92002 0.90620 1.19732 1.19663 0.96261 0.93952 0.94631 1.21319 0.98849 0.92393 0.97409 1.21011 0.99660 0.98828 1.00971 1.19641 0.92784 0.90689 0.93053 1.59298 1.13740 1.00930 1.45126 1.22991 0.94523 0.91777 1.01461 1.22134 0.93891 0.94453 0.96558 1.60761 1.18384 1.46473 1.05981 1.22211 0.94762 0.87340 1.03165 1.22647 0.95172 0.99576 0.92376 1.67540 1.29281 1.02858 1.23534 1.22947 0.91255 0.91389 0.96542 1.17198 0.92677 0.88859 0.85770 1.19532 0.90977 1.03473 1.33594 0.89820 1.25957 1.01402 0.94186 0.92655 1.69819 1.38665 1.11045 1.20423 0.86329 0.81800 0.78583 0.80440 1.19223 1.19830 1.18266 1.20514 0.89368 0.99090 1.12254 0.93620 0.93683 0.89861 0.88511 0.88980 0.85557 0.85986 0.89558 0.94209 0.89982 0.89834 0.84455 0.89996 0.90081 0.93578 0.89090 0.81972 0.90432 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.02 10.48 -19.35 -0.20 -7.23 16 3 C 0.14 3.16 6.67 -39.24 -0.26 2.90 16 4 C -0.32 -6.78 9.02 -39.24 -0.35 -7.13 16 5 C -0.04 -0.82 9.52 -39.33 -0.37 -1.19 16 6 C -0.21 -4.67 5.54 -104.22 -0.58 -5.25 16 7 C -0.04 -0.88 4.92 -104.73 -0.52 -1.39 16 8 C -0.07 -1.33 9.63 -39.28 -0.38 -1.70 16 9 C -0.18 -2.99 9.14 -39.64 -0.36 -3.35 16 10 C 0.27 4.65 6.40 -155.06 -0.99 3.66 16 11 N -0.47 -6.80 4.73 -173.01 -0.82 -7.62 16 12 C 0.02 0.24 5.36 -3.76 -0.02 0.22 16 13 C 0.06 0.56 6.72 -3.77 -0.03 0.53 16 14 N -0.69 -6.76 6.91 -113.64 -0.79 -7.55 16 15 C 0.06 0.58 6.72 -3.77 -0.03 0.56 16 16 C 0.03 0.42 4.77 -3.77 -0.02 0.40 16 17 N -0.52 -10.07 8.67 -12.06 -0.10 -10.18 16 18 C 0.14 2.84 9.18 -17.08 -0.16 2.68 16 19 C 0.16 3.96 5.55 -106.58 -0.59 3.37 16 20 C -0.45 -11.10 7.12 -37.94 -0.27 -11.37 16 21 H 0.08 2.08 6.63 -52.48 -0.35 1.73 16 22 C 0.08 1.87 5.15 -17.32 -0.09 1.78 16 23 N -0.78 -19.14 10.99 55.55 0.61 -18.53 16 24 Si 0.90 18.28 29.59 -169.99 -5.03 13.25 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 27 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 28 C -0.19 -4.90 8.59 -38.80 -0.33 -5.23 16 29 H 0.05 0.68 7.64 -51.93 -0.40 0.28 16 30 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.81 6.25 -52.49 -0.33 1.49 16 33 H 0.09 1.73 8.05 -52.49 -0.42 1.30 16 34 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.12 1.67 7.15 -52.48 -0.38 1.29 16 36 H 0.09 0.92 6.76 -51.93 -0.35 0.57 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.34 3.04 8.89 -39.29 -0.35 2.69 16 41 H 0.08 0.75 8.14 -51.92 -0.42 0.33 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 44 H 0.09 1.38 7.82 -51.93 -0.41 0.97 16 45 H 0.16 3.57 7.31 -52.49 -0.38 3.18 16 46 H 0.28 6.41 8.30 -40.82 -0.34 6.08 16 47 H 0.13 3.40 6.25 -52.49 -0.33 3.07 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -27.55 376.16 -11.61 -39.17 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -6.60 Total: 11.98 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -4.36 Total: -18.97 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -1.10 Total: -43.88 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.20 Total: -7.23 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.55 -11.61 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240488626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.403 kcal (2) G-P(sol) polarization free energy of solvation -27.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds