Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35875 * 117.00200 * 2 1 4 4 C 1.39505 * 119.77143 * 0.02562 * 3 2 1 5 5 C 1.37882 * 120.63093 * 179.97438 * 4 3 2 6 6 C 1.39255 * 120.15690 * 359.97438 * 5 4 3 7 7 C 1.47737 * 120.22624 * 180.27470 * 6 5 4 8 8 C 1.40311 * 120.48167 * 309.45106 * 7 6 5 9 9 C 1.36920 * 118.48906 * 179.73060 * 8 7 6 10 10 C 1.39356 * 119.38804 * 0.54425 * 9 8 7 11 11 N 1.38756 * 119.53297 * 179.74020 * 10 9 8 12 12 C 1.46960 * 110.99665 * 56.17643 * 11 10 9 13 13 C 1.53055 * 109.36241 * 183.18678 * 12 11 10 14 14 N 1.46954 * 109.36509 * 301.60383 * 13 12 11 15 15 C 1.46950 * 110.88199 * 59.31739 * 14 13 12 16 16 C 1.46954 * 111.00241 * 179.97438 * 11 10 9 17 17 N 1.32537 * 120.93791 * 359.71754 * 10 9 8 18 18 C 1.31751 * 121.63993 * 0.02562 * 17 10 9 19 19 C 1.41945 * 119.54565 * 0.02562 * 6 5 4 20 20 C 1.40847 * 120.30714 * 180.02562 * 19 6 5 21 21 H 1.08006 * 120.00053 * 333.57203 * 20 19 6 22 22 C 1.40000 * 120.00258 * 153.56793 * 20 19 6 23 23 N 1.30816 * 120.00017 * 343.65351 * 22 20 19 24 24 Si 1.86800 * 120.00276 * 163.65063 * 22 20 19 25 25 H 1.48499 * 109.46873 * 94.62419 * 24 22 20 26 26 H 1.48498 * 109.46958 * 214.61934 * 24 22 20 27 27 H 1.48496 * 109.47055 * 334.62236 * 24 22 20 28 28 C 1.37879 * 119.77353 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47122 * 299.99554 * 1 2 3 30 30 H 1.08997 * 109.47071 * 60.00312 * 1 2 3 31 31 H 1.09004 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.07995 * 119.68692 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.92395 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.75583 * 359.97347 * 8 7 6 35 35 H 1.08003 * 120.30851 * 180.25894 * 9 8 7 36 36 H 1.08997 * 109.48957 * 303.15531 * 12 11 10 37 37 H 1.08999 * 109.49048 * 63.22173 * 12 11 10 38 38 H 1.08999 * 109.48938 * 181.62936 * 13 12 11 39 39 H 1.09000 * 109.50433 * 61.57509 * 13 12 11 40 40 H 1.00907 * 110.99855 * 295.44670 * 14 13 12 41 41 H 1.09008 * 109.48988 * 180.71034 * 15 14 13 42 42 H 1.08996 * 109.50967 * 60.66418 * 15 14 13 43 43 H 1.08997 * 109.49046 * 296.78413 * 16 11 10 44 44 H 1.09003 * 109.48474 * 56.84657 * 16 11 10 45 45 H 1.07996 * 119.75064 * 179.97438 * 18 17 10 46 46 H 0.96998 * 120.00323 * 180.02562 * 23 22 20 47 47 H 1.07996 * 120.08828 * 0.03705 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 1.2815 2.3776 0.0005 5 6 1.8890 3.6154 0.0011 6 6 3.2781 3.7129 0.0016 7 6 3.9307 5.0383 0.0083 8 6 3.5557 6.0209 -0.9205 9 6 4.1833 7.2369 -0.8740 10 6 5.1760 7.4581 0.0788 11 7 5.8178 8.6875 0.1251 12 6 4.8496 9.7811 0.2875 13 6 5.5878 11.1215 0.2542 14 7 6.5948 11.1499 1.3242 15 6 7.5628 10.0563 1.1617 16 6 6.8246 8.7161 1.1951 17 7 5.5155 6.5111 0.9416 18 6 4.9336 5.3291 0.9349 19 6 4.0628 2.5300 0.0011 20 6 5.4690 2.6100 0.0022 21 1 5.9610 3.4772 -0.4130 22 6 6.2292 1.5653 0.5414 23 7 5.6636 0.6790 1.3198 24 14 8.0510 1.4368 0.1494 25 1 8.8360 2.0990 1.2220 26 1 8.4391 0.0060 0.0634 27 1 8.3262 2.1032 -1.1488 28 6 3.4231 1.2773 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2036 2.3109 0.0005 33 1 1.2861 4.5114 0.0019 34 1 2.7868 5.8239 -1.6528 35 1 3.9148 8.0159 -1.5722 36 1 4.1222 9.7463 -0.5234 37 1 4.3355 9.6728 1.2425 38 1 4.8754 11.9328 0.4035 39 1 6.0795 11.2423 -0.7111 40 1 6.1578 11.1141 2.2330 41 1 8.2904 10.0911 1.9726 42 1 8.0773 10.1645 0.2069 43 1 6.3330 8.5956 2.1604 44 1 7.5371 7.9047 1.0457 45 1 5.2345 4.5796 1.6518 46 1 6.1903 -0.0447 1.6937 47 1 4.0090 0.3701 -0.0016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240488626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = 15.496698 kcal Electronic energy + Delta-G solvation = -28918.554312 eV Core-core repulsion = 25065.458528 eV Total energy + Delta-G solvation = -3853.095784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.70033 -40.51667 -39.59223 -38.07485 -35.62910 -35.29468 -33.58093 -32.21282 -31.87221 -31.49215 -29.53895 -27.89407 -27.06613 -26.31004 -25.17985 -23.68218 -23.44620 -22.65956 -21.72437 -21.30721 -19.56436 -18.66747 -18.00924 -17.41783 -17.19012 -16.79452 -16.44928 -16.35688 -16.32687 -15.94241 -15.69117 -15.44164 -15.16212 -14.99110 -14.64910 -14.55526 -14.36403 -13.93048 -13.72206 -13.67007 -13.52353 -13.16745 -13.10642 -12.86528 -12.75553 -12.59788 -12.32114 -12.30303 -12.15205 -12.03149 -11.75419 -11.73741 -11.38402 -11.06559 -10.76957 -10.69564 -10.32025 -9.46392 -9.42278 -9.16389 -8.77263 -8.36114 -6.38829 0.13793 0.46647 0.94570 1.16583 1.33480 1.43683 1.48379 2.14987 2.48394 2.65923 2.76767 2.95600 3.31391 3.54734 3.65801 3.97465 4.02752 4.13266 4.16485 4.18610 4.24944 4.27658 4.33133 4.38317 4.44962 4.46912 4.50956 4.57279 4.61147 4.74212 4.74508 4.89411 4.91470 5.02366 5.03164 5.09509 5.12537 5.14655 5.27821 5.41643 5.50545 5.60782 5.75849 5.87317 5.90396 5.96198 6.06104 6.13301 6.22851 6.39712 6.44853 6.86052 6.88825 7.01174 7.14401 8.25469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012123 B = 0.003330 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.018139 B = 8406.391555 C =10363.046301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.130 3.870 4 C -0.312 4.312 5 C -0.041 4.041 6 C -0.208 4.208 7 C -0.068 4.068 8 C -0.066 4.066 9 C -0.174 4.174 10 C 0.270 3.730 11 N -0.474 5.474 12 C 0.020 3.980 13 C 0.065 3.935 14 N -0.687 5.687 15 C 0.066 3.934 16 C 0.034 3.966 17 N -0.536 5.536 18 C 0.123 3.877 19 C 0.133 3.867 20 C -0.469 4.469 21 H 0.073 0.927 22 C 0.043 3.957 23 N -0.810 5.810 24 Si 0.966 3.034 25 H -0.263 1.263 26 H -0.263 1.263 27 H -0.263 1.263 28 C -0.227 4.227 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.148 0.852 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.034 0.966 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.345 0.655 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.067 0.933 45 H 0.135 0.865 46 H 0.289 0.711 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 14.377 -1.748 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.086 3.914 4 C -0.331 4.331 5 C -0.059 4.059 6 C -0.210 4.210 7 C -0.071 4.071 8 C -0.091 4.091 9 C -0.196 4.196 10 C 0.039 3.961 11 N -0.193 5.193 12 C -0.107 4.107 13 C -0.065 4.065 14 N -0.315 5.315 15 C -0.064 4.064 16 C -0.095 4.095 17 N -0.250 5.250 18 C -0.033 4.033 19 C 0.130 3.870 20 C -0.498 4.498 21 H 0.091 0.909 22 C -0.174 4.174 23 N -0.435 5.435 24 Si 0.787 3.213 25 H -0.188 1.188 26 H -0.187 1.187 27 H -0.187 1.187 28 C -0.248 4.248 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.177 0.823 36 H 0.119 0.881 37 H 0.053 0.947 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.163 0.837 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.152 0.848 46 H 0.100 0.900 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.059 14.777 -1.730 15.020 hybrid contribution -0.842 -2.009 0.464 2.227 sum -2.901 12.769 -1.266 13.155 Atomic orbital electron populations 1.23156 0.77532 1.04558 1.01581 1.85976 1.22857 1.28356 1.89424 1.19119 0.92121 0.84007 0.96183 1.20697 0.98907 0.91675 1.21826 1.20676 0.92827 0.96507 0.95906 1.18645 0.92863 0.90941 1.18569 1.19608 0.97205 0.93996 0.96255 1.21530 0.98946 0.91982 0.96667 1.21342 0.98444 0.99047 1.00772 1.20144 0.92413 0.91268 0.92317 1.59386 1.14307 1.00443 1.45144 1.23158 0.94361 0.91464 1.01739 1.22199 0.94026 0.93855 0.96378 1.60774 1.18594 1.45504 1.06641 1.22140 0.94834 0.85722 1.03720 1.22642 0.94648 1.00703 0.91477 1.67508 1.29864 1.02867 1.24780 1.22554 0.92163 0.91686 0.96915 1.17495 0.93275 0.89758 0.86435 1.19540 0.91467 1.03830 1.34968 0.90924 1.26625 1.05007 0.93630 0.92122 1.69877 1.40165 1.11878 1.21576 0.85422 0.77169 0.78880 0.79799 1.18823 1.18693 1.18719 1.20444 0.90659 0.98458 1.15209 0.92721 0.92257 0.86691 0.85289 0.85812 0.83389 0.82301 0.88110 0.94738 0.87366 0.89825 0.83733 0.88554 0.90219 0.94772 0.91443 0.84777 0.89987 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.80 113.37 1.11 1.87 16 2 O -0.35 -15.04 10.48 -92.15 -0.97 -16.01 16 3 C 0.13 6.19 6.67 22.49 0.15 6.34 16 4 C -0.31 -12.97 9.02 22.49 0.20 -12.77 16 5 C -0.04 -1.70 9.52 22.43 0.21 -1.49 16 6 C -0.21 -9.68 5.54 -19.60 -0.11 -9.79 16 7 C -0.07 -2.84 4.92 -19.93 -0.10 -2.94 16 8 C -0.07 -2.24 9.63 22.47 0.22 -2.02 16 9 C -0.17 -5.25 9.14 22.23 0.20 -5.05 16 10 C 0.27 9.06 6.40 133.16 0.85 9.91 16 11 N -0.47 -12.81 4.73 -701.29 -3.31 -16.13 16 12 C 0.02 0.40 5.36 86.31 0.46 0.86 16 13 C 0.07 0.99 6.72 86.31 0.58 1.57 16 14 N -0.69 -11.55 6.91 -513.46 -3.55 -15.10 16 15 C 0.07 1.27 6.72 86.31 0.58 1.85 16 16 C 0.03 0.90 4.77 86.31 0.41 1.32 16 17 N -0.54 -21.27 8.67 -192.08 -1.67 -22.94 16 18 C 0.12 5.38 9.18 85.04 0.78 6.16 16 19 C 0.13 7.03 5.55 -21.13 -0.12 6.92 16 20 C -0.47 -24.83 7.12 23.34 0.17 -24.67 16 21 H 0.07 3.87 6.63 -2.91 -0.02 3.85 16 22 C 0.04 2.18 5.15 85.27 0.44 2.62 16 23 N -0.81 -42.57 10.99 21.84 0.24 -42.33 16 24 Si 0.97 39.37 29.59 68.60 2.03 41.40 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 C -0.23 -12.23 8.59 22.78 0.20 -12.04 16 29 H 0.05 1.49 7.64 -2.39 -0.02 1.47 16 30 H 0.06 1.55 7.65 -2.39 -0.02 1.54 16 31 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.13 4.45 6.25 -2.91 -0.02 4.43 16 33 H 0.12 4.28 8.05 -2.91 -0.02 4.26 16 34 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 35 H 0.16 3.61 7.15 -2.91 -0.02 3.59 16 36 H 0.10 1.71 6.76 -2.39 -0.02 1.70 16 37 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.34 5.25 8.89 -89.69 -0.80 4.45 16 41 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.03 0.97 8.04 -2.39 -0.02 0.95 16 44 H 0.07 2.08 7.82 -2.39 -0.02 2.06 16 45 H 0.13 6.47 7.31 -2.91 -0.02 6.45 16 46 H 0.29 13.84 8.30 -92.71 -0.77 13.07 16 47 H 0.10 5.82 6.25 -2.91 -0.02 5.80 16 Total: -1.00 -64.12 376.16 -0.78 -64.89 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.20 Total: 37.55 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 6.24 Total: -31.34 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -8.29 Total: -96.50 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.97 Total: -16.01 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -64.12 -0.78 -64.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240488626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.391 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds