Wall clock time and date at job start Sat Apr 11 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35603 * 117.00004 * 2 1 4 4 C 1.38518 * 120.08612 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.30997 * 179.97438 * 4 3 2 6 6 C 1.39958 * 120.47159 * 0.04401 * 5 4 3 7 7 C 1.48351 * 119.92215 * 179.97438 * 6 5 4 8 8 C 1.39982 * 120.45599 * 359.97438 * 7 6 5 9 9 C 1.38060 * 118.40125 * 180.02562 * 8 7 6 10 10 C 1.39245 * 119.22051 * 0.02562 * 9 8 7 11 11 N 1.38939 * 119.56881 * 180.02562 * 10 9 8 12 12 C 1.46956 * 111.00448 * 56.20136 * 11 10 9 13 13 C 1.53050 * 109.36440 * 183.18473 * 12 11 10 14 14 N 1.46955 * 109.36756 * 301.60035 * 13 12 11 15 15 C 1.46960 * 110.88060 * 59.31511 * 14 13 12 16 16 C 1.46968 * 110.99504 * 180.02562 * 11 10 9 17 17 N 1.32432 * 120.85497 * 0.02562 * 10 9 8 18 18 C 1.31822 * 121.74922 * 359.65914 * 17 10 9 19 19 C 1.38617 * 120.15230 * 359.67538 * 6 5 4 20 20 C 1.40517 * 119.69116 * 0.57550 * 19 6 5 21 21 C 1.41180 * 120.23129 * 179.72262 * 20 19 6 22 22 H 1.07995 * 120.00269 * 154.98984 * 21 20 19 23 23 C 1.39904 * 119.99611 * 335.26520 * 21 20 19 24 24 N 1.30877 * 120.00201 * 342.12531 * 23 21 20 25 25 Si 1.86808 * 119.99732 * 162.12377 * 23 21 20 26 26 H 1.48503 * 109.46903 * 60.00009 * 25 23 21 27 27 H 1.48496 * 109.46860 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46865 * 300.00062 * 25 23 21 29 29 H 1.09000 * 109.46618 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47165 * 59.99593 * 1 2 3 31 31 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.84190 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.76765 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.79885 * 359.97438 * 8 7 6 35 35 H 1.07992 * 120.39070 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.48422 * 303.15081 * 12 11 10 37 37 H 1.08996 * 109.48493 * 63.21588 * 12 11 10 38 38 H 1.08997 * 109.48698 * 181.62967 * 13 12 11 39 39 H 1.09006 * 109.50457 * 61.57651 * 13 12 11 40 40 H 1.00905 * 110.99531 * 295.45578 * 14 13 12 41 41 H 1.09003 * 109.48176 * 180.71094 * 15 14 13 42 42 H 1.08998 * 109.50341 * 60.66597 * 15 14 13 43 43 H 1.09001 * 109.48416 * 296.77695 * 16 11 10 44 44 H 1.08996 * 109.48668 * 56.84161 * 16 11 10 45 45 H 1.07999 * 119.66161 * 180.33365 * 18 17 10 46 46 H 1.08007 * 120.15261 * 180.32171 * 19 6 5 47 47 H 0.96999 * 120.00083 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2920 2.3711 -0.0005 5 6 1.9138 3.6033 0.0000 6 6 3.3105 3.6935 0.0002 7 6 3.9661 5.0243 0.0001 8 6 3.1972 6.1941 -0.0006 9 6 3.8513 7.4099 -0.0011 10 6 5.2436 7.4327 -0.0014 11 7 5.9093 8.6522 -0.0014 12 6 5.4921 9.4800 1.1389 13 6 6.1867 10.8415 1.0586 14 7 7.6432 10.6464 1.0581 15 6 8.0604 9.8184 -0.0822 16 6 7.3660 8.4570 -0.0024 17 7 5.9413 6.3071 -0.0018 18 6 5.3541 5.1269 0.0049 19 6 4.0826 2.5423 0.0066 20 6 3.4565 1.2843 0.0006 21 6 4.2318 0.1045 0.0012 22 1 3.8183 -0.8132 0.3925 23 6 5.5378 0.1255 -0.4999 24 7 5.9258 1.1065 -1.2745 25 14 6.7280 -1.2466 -0.0633 26 1 6.1827 -2.5441 -0.5371 27 1 8.0373 -0.9924 -0.7161 28 1 6.9095 -1.2942 1.4098 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3132 -0.0005 33 1 1.3184 4.5044 0.0000 34 1 2.1182 6.1466 -0.0015 35 1 3.2898 8.3323 -0.0020 36 1 4.4117 9.6207 1.1100 37 1 5.7700 8.9843 2.0690 38 1 5.9011 11.4467 1.9189 39 1 5.8875 11.3492 0.1415 40 1 7.9544 10.2444 1.9298 41 1 9.1409 9.6779 -0.0533 42 1 7.7829 10.3139 -1.0125 43 1 7.6654 7.9495 0.9146 44 1 7.6511 7.8519 -0.8630 45 1 5.9561 4.2304 0.0098 46 1 5.1604 2.6119 0.0119 47 1 6.8312 1.1209 -1.6223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240489562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:30 Heat of formation + Delta-G solvation = 36.928477 kcal Electronic energy + Delta-G solvation = -28585.802185 eV Core-core repulsion = 24733.635753 eV Total energy + Delta-G solvation = -3852.166432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.56786 -38.96220 -38.38733 -36.30726 -34.54839 -33.72336 -32.30570 -31.11747 -30.67010 -29.88953 -27.74959 -26.59441 -25.50882 -25.21864 -24.12353 -22.56139 -22.36524 -20.91932 -20.54067 -19.89751 -17.81702 -17.45392 -16.60301 -16.18663 -15.77426 -15.41864 -15.07690 -15.00826 -14.77506 -14.73331 -14.61634 -14.37735 -14.18660 -13.48365 -13.41736 -13.11322 -12.94033 -12.67663 -12.45993 -12.31374 -12.08874 -11.81399 -11.58148 -11.46189 -11.39399 -11.29762 -11.21883 -11.03661 -10.87799 -10.52287 -10.45210 -10.10347 -9.61985 -9.55616 -9.43728 -9.22157 -9.00352 -8.69451 -8.10351 -7.59961 -6.88241 -6.61134 -4.32344 1.28401 1.64893 2.70442 2.88999 3.07078 3.09561 3.16976 3.51020 3.92569 4.02821 4.18886 4.41786 4.60769 4.63985 4.80163 4.91071 5.00051 5.05607 5.15099 5.29070 5.32236 5.42779 5.43833 5.45193 5.51340 5.61714 5.69107 5.70458 5.76410 5.87341 5.90764 5.92679 5.98233 6.15818 6.17583 6.28692 6.51135 6.64510 6.67271 6.78634 6.83697 7.03507 7.06586 7.19649 7.24270 7.36157 7.55360 7.60857 7.87074 8.06924 8.28235 8.35274 8.60392 8.75990 8.96005 10.14950 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.002878 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.416118 B = 9726.357227 C =11620.380363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.022 3.978 4 C -0.178 4.178 5 C -0.193 4.193 6 C -0.066 4.066 7 C -0.073 4.073 8 C -0.065 4.065 9 C -0.181 4.181 10 C 0.277 3.723 11 N -0.472 5.472 12 C 0.020 3.980 13 C 0.060 3.940 14 N -0.688 5.688 15 C 0.055 3.945 16 C 0.030 3.970 17 N -0.514 5.514 18 C 0.124 3.876 19 C -0.127 4.127 20 C 0.096 3.904 21 C -0.444 4.444 22 H 0.083 0.917 23 C 0.074 3.926 24 N -0.796 5.796 25 Si 0.909 3.091 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.339 0.661 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.164 0.836 46 H 0.131 0.869 47 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.608 12.924 3.672 13.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.023 4.023 4 C -0.197 4.197 5 C -0.213 4.213 6 C -0.067 4.067 7 C -0.076 4.076 8 C -0.091 4.091 9 C -0.203 4.203 10 C 0.046 3.954 11 N -0.191 5.191 12 C -0.108 4.108 13 C -0.070 4.070 14 N -0.316 5.316 15 C -0.075 4.075 16 C -0.099 4.099 17 N -0.227 5.227 18 C -0.033 4.033 19 C -0.146 4.146 20 C 0.093 3.907 21 C -0.474 4.474 22 H 0.101 0.899 23 C -0.143 4.143 24 N -0.421 5.421 25 Si 0.733 3.267 26 H -0.190 1.190 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.152 0.848 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.156 0.844 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.181 0.819 46 H 0.148 0.852 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.654 13.793 2.773 14.084 hybrid contribution -0.942 -1.854 0.844 2.244 sum -0.288 11.939 3.616 12.478 Atomic orbital electron populations 1.22757 0.81609 1.01861 0.99985 1.85964 1.18332 1.28230 1.89940 1.19354 0.92403 0.82665 1.07837 1.20538 0.97514 0.92696 1.08986 1.20120 0.92918 0.95422 1.12826 1.18233 0.92851 0.90298 1.05346 1.19945 0.94031 0.94078 0.99502 1.21521 1.00402 0.91116 0.96051 1.21334 0.93315 0.98677 1.07013 1.19694 0.90157 0.88423 0.97141 1.59333 1.07244 1.12131 1.40408 1.23008 1.01945 0.95131 0.90723 1.22140 0.86929 0.94542 1.03426 1.60758 1.12522 1.51970 1.06322 1.22213 0.99409 0.90839 0.95004 1.22675 0.85743 0.98172 1.03264 1.67498 1.40763 0.98171 1.16296 1.22831 0.92285 0.94199 0.94016 1.21201 0.99455 0.89657 1.04306 1.16952 0.87310 0.93887 0.92569 1.19387 0.96474 0.96551 1.34964 0.89856 1.25890 0.98839 0.96961 0.92621 1.69806 1.19209 1.30800 1.22323 0.86344 0.78902 0.81451 0.79963 1.18979 1.20316 1.18808 0.94156 0.94064 0.89937 0.88303 0.88807 0.84791 0.85459 0.89460 0.94042 0.89852 0.89777 0.84378 0.89881 0.90032 0.93471 0.89056 0.81929 0.85151 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -6.99 9.76 -18.51 -0.18 -7.17 16 3 C 0.02 0.53 6.72 -38.28 -0.26 0.27 16 4 C -0.18 -3.84 9.01 -39.56 -0.36 -4.20 16 5 C -0.19 -4.08 9.43 -39.02 -0.37 -4.45 16 6 C -0.07 -1.47 5.87 -104.95 -0.62 -2.09 16 7 C -0.07 -1.43 5.89 -104.73 -0.62 -2.05 16 8 C -0.07 -1.09 9.52 -38.99 -0.37 -1.46 16 9 C -0.18 -2.75 9.19 -39.27 -0.36 -3.11 16 10 C 0.28 4.47 6.41 -155.01 -0.99 3.48 16 11 N -0.47 -6.31 4.73 -173.02 -0.82 -7.13 16 12 C 0.02 0.21 5.36 -3.77 -0.02 0.19 16 13 C 0.06 0.51 6.72 -3.77 -0.03 0.49 16 14 N -0.69 -6.28 6.91 -113.64 -0.79 -7.06 16 15 C 0.06 0.54 6.72 -3.77 -0.03 0.51 16 16 C 0.03 0.38 4.78 -3.77 -0.02 0.36 16 17 N -0.51 -9.37 8.67 -12.16 -0.11 -9.47 16 18 C 0.12 2.43 10.59 -17.21 -0.18 2.25 16 19 C -0.13 -3.12 8.06 -38.58 -0.31 -3.43 16 20 C 0.10 2.49 5.58 -106.72 -0.60 1.89 16 21 C -0.44 -11.65 8.71 -37.84 -0.33 -11.98 16 22 H 0.08 2.17 7.64 -52.49 -0.40 1.77 16 23 C 0.07 1.82 5.13 -17.34 -0.09 1.73 16 24 N -0.80 -19.88 10.97 55.55 0.61 -19.27 16 25 Si 0.91 18.53 29.59 -169.99 -5.03 13.50 16 26 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 27 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 28 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 29 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.84 6.27 -52.49 -0.33 1.51 16 33 H 0.09 1.71 6.23 -52.49 -0.33 1.38 16 34 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 35 H 0.13 1.57 7.16 -52.49 -0.38 1.20 16 36 H 0.09 0.84 6.77 -51.93 -0.35 0.49 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.34 2.82 8.89 -39.29 -0.35 2.47 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.63 8.05 -51.93 -0.42 0.22 16 44 H 0.09 1.28 7.82 -51.93 -0.41 0.87 16 45 H 0.16 3.28 6.19 -52.49 -0.33 2.96 16 46 H 0.13 3.24 4.31 -52.48 -0.23 3.02 16 47 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -28.49 373.57 -11.53 -40.02 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.31 Total: 11.00 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -4.55 Total: -20.04 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -1.10 Total: -42.93 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.18 Total: -7.17 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.49 -11.53 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240489562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.947 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds