Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35603 * 117.00004 * 2 1 4 4 C 1.38518 * 120.08612 * 359.97438 * 3 2 1 5 5 C 1.38026 * 120.30997 * 179.97438 * 4 3 2 6 6 C 1.39958 * 120.47159 * 0.04401 * 5 4 3 7 7 C 1.48351 * 119.92215 * 179.97438 * 6 5 4 8 8 C 1.39982 * 120.45599 * 359.97438 * 7 6 5 9 9 C 1.38060 * 118.40125 * 180.02562 * 8 7 6 10 10 C 1.39245 * 119.22051 * 0.02562 * 9 8 7 11 11 N 1.38939 * 119.56881 * 180.02562 * 10 9 8 12 12 C 1.46956 * 111.00448 * 56.20136 * 11 10 9 13 13 C 1.53050 * 109.36440 * 183.18473 * 12 11 10 14 14 N 1.46955 * 109.36756 * 301.60035 * 13 12 11 15 15 C 1.46960 * 110.88060 * 59.31511 * 14 13 12 16 16 C 1.46968 * 110.99504 * 180.02562 * 11 10 9 17 17 N 1.32432 * 120.85497 * 0.02562 * 10 9 8 18 18 C 1.31822 * 121.74922 * 359.65914 * 17 10 9 19 19 C 1.38617 * 120.15230 * 359.67538 * 6 5 4 20 20 C 1.40517 * 119.69116 * 0.57550 * 19 6 5 21 21 C 1.41180 * 120.23129 * 179.72262 * 20 19 6 22 22 H 1.07995 * 120.00269 * 154.98984 * 21 20 19 23 23 C 1.39904 * 119.99611 * 335.26520 * 21 20 19 24 24 N 1.30877 * 120.00201 * 342.12531 * 23 21 20 25 25 Si 1.86808 * 119.99732 * 162.12377 * 23 21 20 26 26 H 1.48503 * 109.46903 * 60.00009 * 25 23 21 27 27 H 1.48496 * 109.46860 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46865 * 300.00062 * 25 23 21 29 29 H 1.09000 * 109.46618 * 299.99804 * 1 2 3 30 30 H 1.09003 * 109.47165 * 59.99593 * 1 2 3 31 31 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.84190 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.76765 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.79885 * 359.97438 * 8 7 6 35 35 H 1.07992 * 120.39070 * 179.97438 * 9 8 7 36 36 H 1.08996 * 109.48422 * 303.15081 * 12 11 10 37 37 H 1.08996 * 109.48493 * 63.21588 * 12 11 10 38 38 H 1.08997 * 109.48698 * 181.62967 * 13 12 11 39 39 H 1.09006 * 109.50457 * 61.57651 * 13 12 11 40 40 H 1.00905 * 110.99531 * 295.45578 * 14 13 12 41 41 H 1.09003 * 109.48176 * 180.71094 * 15 14 13 42 42 H 1.08998 * 109.50341 * 60.66597 * 15 14 13 43 43 H 1.09001 * 109.48416 * 296.77695 * 16 11 10 44 44 H 1.08996 * 109.48668 * 56.84161 * 16 11 10 45 45 H 1.07999 * 119.66161 * 180.33365 * 18 17 10 46 46 H 1.08007 * 120.15261 * 180.32171 * 19 6 5 47 47 H 0.96999 * 120.00083 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 1.2920 2.3711 -0.0005 5 6 1.9138 3.6033 0.0000 6 6 3.3105 3.6935 0.0002 7 6 3.9661 5.0243 0.0001 8 6 3.1972 6.1941 -0.0006 9 6 3.8513 7.4099 -0.0011 10 6 5.2436 7.4327 -0.0014 11 7 5.9093 8.6522 -0.0014 12 6 5.4921 9.4800 1.1389 13 6 6.1867 10.8415 1.0586 14 7 7.6432 10.6464 1.0581 15 6 8.0604 9.8184 -0.0822 16 6 7.3660 8.4570 -0.0024 17 7 5.9413 6.3071 -0.0018 18 6 5.3541 5.1269 0.0049 19 6 4.0826 2.5423 0.0066 20 6 3.4565 1.2843 0.0006 21 6 4.2318 0.1045 0.0012 22 1 3.8183 -0.8132 0.3925 23 6 5.5378 0.1255 -0.4999 24 7 5.9258 1.1065 -1.2745 25 14 6.7280 -1.2466 -0.0633 26 1 6.1827 -2.5441 -0.5371 27 1 8.0373 -0.9924 -0.7161 28 1 6.9095 -1.2942 1.4098 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2136 2.3132 -0.0005 33 1 1.3184 4.5044 0.0000 34 1 2.1182 6.1466 -0.0015 35 1 3.2898 8.3323 -0.0020 36 1 4.4117 9.6207 1.1100 37 1 5.7700 8.9843 2.0690 38 1 5.9011 11.4467 1.9189 39 1 5.8875 11.3492 0.1415 40 1 7.9544 10.2444 1.9298 41 1 9.1409 9.6779 -0.0533 42 1 7.7829 10.3139 -1.0125 43 1 7.6654 7.9495 0.9146 44 1 7.6511 7.8519 -0.8630 45 1 5.9561 4.2304 0.0098 46 1 5.1604 2.6119 0.0119 47 1 6.8312 1.1209 -1.6223 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240489562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = 19.290466 kcal Electronic energy + Delta-G solvation = -28586.567027 eV Core-core repulsion = 24733.635753 eV Total energy + Delta-G solvation = -3852.931274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.79188 -40.49059 -39.62624 -37.89731 -35.88689 -35.23127 -33.65688 -32.28762 -31.84448 -31.62766 -29.17545 -28.02337 -27.16857 -26.39564 -25.27118 -23.76471 -23.68428 -22.42536 -21.73364 -21.34629 -19.37517 -18.79224 -18.25164 -17.59113 -17.18414 -16.60523 -16.48700 -16.25169 -16.18595 -15.94035 -15.71350 -15.63969 -15.24976 -14.91730 -14.71549 -14.56363 -14.23986 -14.21169 -13.92240 -13.55101 -13.42051 -13.20043 -13.03802 -12.90709 -12.72552 -12.45168 -12.35397 -12.29201 -12.13144 -12.08420 -11.90161 -11.82200 -11.24988 -11.08687 -10.85945 -10.77182 -10.40878 -9.53567 -9.44892 -9.37602 -8.66880 -8.25843 -6.23256 -0.15130 0.30661 0.95598 1.22153 1.36976 1.47638 1.52742 2.21603 2.39051 2.65584 2.90375 2.96943 3.29528 3.41651 3.70914 3.91764 3.93060 3.97554 4.04608 4.06991 4.15962 4.17866 4.26818 4.34082 4.38986 4.43178 4.49953 4.57370 4.60694 4.69259 4.72701 4.76236 4.85253 4.95648 5.00416 5.01222 5.09307 5.12888 5.25784 5.36421 5.49576 5.52049 5.66814 5.81023 5.81841 5.94268 6.10440 6.11895 6.29099 6.37704 6.46564 6.77543 6.90711 7.00007 7.20999 8.35163 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.002878 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.416118 B = 9726.357227 C =11620.380363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.007 3.993 4 C -0.180 4.180 5 C -0.185 4.185 6 C -0.071 4.071 7 C -0.100 4.100 8 C -0.055 4.055 9 C -0.172 4.172 10 C 0.277 3.723 11 N -0.473 5.473 12 C 0.019 3.981 13 C 0.065 3.935 14 N -0.688 5.688 15 C 0.066 3.934 16 C 0.033 3.967 17 N -0.532 5.532 18 C 0.111 3.889 19 C -0.149 4.149 20 C 0.056 3.944 21 C -0.484 4.484 22 H 0.069 0.931 23 C 0.037 3.963 24 N -0.826 5.826 25 Si 0.975 3.025 26 H -0.263 1.263 27 H -0.267 1.267 28 H -0.262 1.262 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.103 0.897 37 H 0.034 0.966 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.345 0.655 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.140 0.860 46 H 0.115 0.885 47 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.206 15.902 4.206 16.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.038 4.038 4 C -0.199 4.199 5 C -0.204 4.204 6 C -0.072 4.072 7 C -0.104 4.104 8 C -0.080 4.080 9 C -0.194 4.194 10 C 0.045 3.955 11 N -0.191 5.191 12 C -0.108 4.108 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.064 4.064 16 C -0.096 4.096 17 N -0.246 5.246 18 C -0.046 4.046 19 C -0.168 4.168 20 C 0.054 3.946 21 C -0.514 4.514 22 H 0.087 0.913 23 C -0.177 4.177 24 N -0.453 5.453 25 Si 0.796 3.204 26 H -0.187 1.187 27 H -0.191 1.191 28 H -0.186 1.186 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.128 0.872 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.178 0.822 35 H 0.184 0.816 36 H 0.122 0.878 37 H 0.053 0.947 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.163 0.837 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.052 0.948 44 H 0.088 0.912 45 H 0.157 0.843 46 H 0.132 0.868 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.960 16.784 3.316 17.135 hybrid contribution -0.565 -2.532 0.686 2.683 sum -1.525 14.252 4.002 14.882 Atomic orbital electron populations 1.23112 0.78487 1.04254 1.01135 1.85911 1.21642 1.27948 1.89954 1.19551 0.92240 0.84153 1.07882 1.20917 0.99193 0.91913 1.07847 1.20599 0.92632 0.96798 1.10354 1.18510 0.93646 0.90825 1.04230 1.19863 0.94121 0.94074 1.02295 1.21778 1.01458 0.90319 0.94475 1.21695 0.92879 0.99615 1.05182 1.20227 0.91196 0.88713 0.95341 1.59430 1.07481 1.10704 1.41523 1.23180 1.03215 0.95349 0.89075 1.22208 0.86172 0.93472 1.04635 1.60774 1.13060 1.51424 1.06344 1.22146 0.99886 0.89029 0.95374 1.22669 0.85677 0.99620 1.01608 1.67480 1.41390 0.98408 1.17351 1.22548 0.92513 0.94211 0.95325 1.21172 0.99165 0.90514 1.05998 1.17360 0.88974 0.94399 0.93885 1.19475 0.98118 0.96451 1.37332 0.91255 1.26615 0.99804 0.99294 0.92010 1.69869 1.19685 1.32484 1.23268 0.85356 0.76965 0.78427 0.79617 1.18706 1.19133 1.18608 0.92622 0.92984 0.87165 0.84861 0.85008 0.82204 0.81575 0.87840 0.94722 0.87374 0.89673 0.83744 0.88549 0.90084 0.94788 0.91225 0.84312 0.86766 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 9.81 113.37 1.11 1.89 16 2 O -0.34 -15.55 9.76 -89.13 -0.87 -16.42 16 3 C 0.01 0.32 6.72 23.11 0.16 0.48 16 4 C -0.18 -7.54 9.01 22.29 0.20 -7.34 16 5 C -0.18 -7.51 9.43 22.64 0.21 -7.30 16 6 C -0.07 -3.22 5.87 -20.08 -0.12 -3.34 16 7 C -0.10 -3.98 5.89 -19.94 -0.12 -4.10 16 8 C -0.05 -1.70 9.52 22.65 0.22 -1.48 16 9 C -0.17 -4.67 9.19 22.47 0.21 -4.46 16 10 C 0.28 8.58 6.41 133.10 0.85 9.43 16 11 N -0.47 -11.73 4.73 -701.31 -3.32 -15.05 16 12 C 0.02 0.34 5.36 86.31 0.46 0.81 16 13 C 0.07 0.89 6.72 86.31 0.58 1.47 16 14 N -0.69 -10.71 6.91 -513.44 -3.55 -14.26 16 15 C 0.07 1.17 6.72 86.31 0.58 1.75 16 16 C 0.03 0.81 4.78 86.30 0.41 1.22 16 17 N -0.53 -19.83 8.67 -192.39 -1.67 -21.50 16 18 C 0.11 4.55 10.59 84.92 0.90 5.45 16 19 C -0.15 -7.80 8.06 22.92 0.18 -7.61 16 20 C 0.06 3.10 5.58 -21.23 -0.12 2.98 16 21 C -0.48 -27.13 8.71 23.40 0.20 -26.93 16 22 H 0.07 3.90 7.64 -2.91 -0.02 3.88 16 23 C 0.04 1.91 5.13 85.24 0.44 2.35 16 24 N -0.83 -44.09 10.97 21.82 0.24 -43.86 16 25 Si 0.98 39.95 29.59 68.60 2.03 41.98 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 28 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 29 H 0.06 1.55 7.66 -2.39 -0.02 1.53 16 30 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 31 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.13 4.55 6.27 -2.91 -0.02 4.53 16 33 H 0.13 4.27 6.23 -2.91 -0.02 4.26 16 34 H 0.16 4.04 6.29 -2.91 -0.02 4.02 16 35 H 0.17 3.22 7.16 -2.91 -0.02 3.20 16 36 H 0.10 1.54 6.77 -2.39 -0.02 1.52 16 37 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.34 4.89 8.89 -89.69 -0.80 4.09 16 41 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 44 H 0.07 1.99 7.82 -2.39 -0.02 1.97 16 45 H 0.14 6.23 6.19 -2.91 -0.02 6.21 16 46 H 0.11 6.23 4.31 -2.91 -0.01 6.22 16 47 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 Total: -1.00 -66.96 373.57 -0.55 -67.52 By element: Atomic # 1 Polarization: 36.09 SS G_CDS: 0.22 Total: 36.31 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 6.36 Total: -34.73 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -8.30 Total: -94.66 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.87 Total: -16.42 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -66.96 -0.55 -67.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240489562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.806 kcal (2) G-P(sol) polarization free energy of solvation -66.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds