Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35614 * 117.00177 * 2 1 4 4 C 1.39123 * 119.88300 * 359.72802 * 3 2 1 5 5 C 1.36437 * 120.43838 * 179.71418 * 4 3 2 6 6 C 1.40917 * 120.18130 * 0.56194 * 5 4 3 7 7 C 1.41242 * 120.11195 * 179.74179 * 6 5 4 8 8 H 1.07997 * 120.00078 * 334.50816 * 7 6 5 9 9 C 1.39859 * 119.99503 * 154.51645 * 7 6 5 10 10 N 1.30893 * 120.00240 * 343.04062 * 9 7 6 11 11 Si 1.86807 * 119.99848 * 163.05055 * 9 7 6 12 12 H 1.48491 * 109.47036 * 89.99331 * 11 9 7 13 13 H 1.48498 * 109.46849 * 209.99577 * 11 9 7 14 14 H 1.48498 * 109.46666 * 329.99262 * 11 9 7 15 15 C 1.40614 * 119.76725 * 359.71607 * 6 5 4 16 16 C 1.38591 * 119.57074 * 0.02562 * 15 6 5 17 17 C 1.48314 * 120.09875 * 179.97438 * 16 15 6 18 18 C 1.39988 * 120.45553 * 309.73975 * 17 16 15 19 19 C 1.38060 * 118.40116 * 179.75496 * 18 17 16 20 20 C 1.39237 * 119.22088 * 0.54493 * 19 18 17 21 21 N 1.38943 * 119.57137 * 179.71994 * 20 19 18 22 22 C 1.46959 * 111.00141 * 56.17203 * 21 20 19 23 23 C 1.53047 * 109.36473 * 183.18755 * 22 21 20 24 24 N 1.46965 * 109.36812 * 301.60215 * 23 22 21 25 25 C 1.46950 * 110.87583 * 59.31963 * 24 23 22 26 26 C 1.46960 * 111.00346 * 179.97438 * 21 20 19 27 27 N 1.32431 * 120.85985 * 359.69413 * 20 19 18 28 28 C 1.31817 * 121.74609 * 0.02742 * 27 20 19 29 29 H 1.09003 * 109.46448 * 300.00321 * 1 2 3 30 30 H 1.08996 * 109.46785 * 59.99546 * 1 2 3 31 31 H 1.08994 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.78606 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.90737 * 180.27905 * 5 4 3 34 34 H 0.97002 * 120.00090 * 180.02562 * 10 9 7 35 35 H 1.07999 * 120.21634 * 180.02562 * 15 6 5 36 36 H 1.08006 * 120.80289 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.38943 * 180.25949 * 19 18 17 38 38 H 1.08998 * 109.48906 * 303.16043 * 22 21 20 39 39 H 1.09005 * 109.48624 * 63.22618 * 22 21 20 40 40 H 1.09003 * 109.49035 * 181.63538 * 23 22 21 41 41 H 1.08997 * 109.51049 * 61.58067 * 23 22 21 42 42 H 1.00895 * 110.99444 * 295.45219 * 24 23 22 43 43 H 1.09001 * 109.48835 * 180.71379 * 25 24 23 44 44 H 1.09001 * 109.50974 * 60.65980 * 25 24 23 45 45 H 1.09004 * 109.48166 * 296.78010 * 26 21 20 46 46 H 1.08994 * 109.48805 * 56.84146 * 26 21 20 47 47 H 1.08011 * 119.65555 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2847 2.3736 -0.0057 5 6 1.8923 3.5952 0.0001 6 6 3.2985 3.6870 0.0000 7 6 3.9260 4.9524 0.0005 8 1 3.4095 5.8114 -0.4016 9 6 5.2162 5.0928 0.5216 10 7 5.7138 4.1628 1.2968 11 14 6.2294 6.6078 0.1116 12 1 5.9736 7.6632 1.1243 13 1 7.6718 6.2551 0.1176 14 1 5.8479 7.1091 -1.2331 15 6 4.0747 2.5145 0.0000 16 6 3.4471 1.2788 -0.0005 17 6 4.2544 0.0346 -0.0011 18 6 5.2877 -0.1403 -0.9292 19 6 6.0154 -1.3128 -0.8884 20 6 5.6930 -2.2803 0.0595 21 7 6.4169 -3.4655 0.1033 22 6 7.8527 -3.1999 0.2689 23 6 8.6211 -4.5230 0.2325 24 7 8.1250 -5.4041 1.2990 25 6 6.6892 -5.6697 1.1333 26 6 5.9208 -4.3466 1.1697 27 7 4.7057 -2.0855 0.9204 28 6 3.9913 -0.9777 0.9172 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2066 2.3108 -0.0097 33 1 1.2939 4.4942 0.0001 34 1 6.6086 4.2604 1.6585 35 1 5.1529 2.5764 0.0003 36 1 5.5131 0.6254 -1.6568 37 1 6.8224 -1.4796 -1.5866 38 1 8.1990 -2.5559 -0.5395 39 1 8.0233 -2.7065 1.2258 40 1 9.6833 -4.3310 0.3842 41 1 8.4729 -5.0036 -0.7345 42 1 8.3179 -5.0140 2.2092 43 1 6.3428 -6.3137 1.9416 44 1 6.5183 -6.1633 0.1765 45 1 6.0694 -3.8662 2.1368 46 1 4.8587 -4.5387 1.0181 47 1 3.1932 -0.8543 1.6345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240490174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = 34.995373 kcal Electronic energy + Delta-G solvation = -28943.365325 eV Core-core repulsion = 25091.115067 eV Total energy + Delta-G solvation = -3852.250258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.52016 -39.09666 -38.22762 -36.43506 -34.60696 -33.41571 -32.39286 -31.31134 -30.78462 -29.19202 -28.15955 -26.92781 -25.52678 -24.66736 -24.17980 -22.48490 -22.34877 -20.87632 -20.57637 -20.05683 -17.69434 -17.35831 -16.92615 -16.22202 -15.58676 -15.37164 -15.19039 -15.01137 -14.89234 -14.81862 -14.49918 -14.32594 -14.07995 -13.51385 -13.29552 -13.19378 -12.80109 -12.73232 -12.56239 -12.23425 -12.11333 -11.80830 -11.63559 -11.52782 -11.38510 -11.31709 -11.20321 -11.10166 -10.86397 -10.72321 -10.09068 -9.99938 -9.79070 -9.55923 -9.39203 -9.13267 -9.01631 -8.66516 -8.11343 -7.37901 -7.01777 -6.78004 -4.35052 1.46309 1.74159 2.68859 2.78733 3.03889 3.06451 3.13453 3.52483 3.89244 4.05713 4.19102 4.29871 4.52284 4.65480 4.84494 4.95401 5.03270 5.09499 5.17783 5.35382 5.36309 5.45578 5.49150 5.53040 5.59080 5.59231 5.65269 5.67156 5.74014 5.82899 5.92520 5.94114 6.02252 6.16620 6.27941 6.39813 6.63969 6.72837 6.78221 6.85693 6.89574 7.00398 7.09140 7.09834 7.28928 7.34627 7.42978 7.65610 7.86542 8.06439 8.33824 8.38452 8.52848 8.80227 8.85253 10.14750 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003276 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.803315 B = 8543.837750 C =10669.402602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.326 6.326 3 C 0.013 3.987 4 C -0.169 4.169 5 C -0.185 4.185 6 C 0.086 3.914 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.799 5.799 11 Si 0.906 3.094 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.261 1.261 15 C -0.112 4.112 16 C -0.064 4.064 17 C -0.067 4.067 18 C -0.052 4.052 19 C -0.183 4.183 20 C 0.282 3.718 21 N -0.472 5.472 22 C 0.019 3.981 23 C 0.060 3.940 24 N -0.688 5.688 25 C 0.055 3.945 26 C 0.031 3.969 27 N -0.520 5.520 28 C 0.141 3.859 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.280 0.720 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.339 0.661 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 -12.470 -1.142 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.241 6.241 3 C -0.031 4.031 4 C -0.187 4.187 5 C -0.205 4.205 6 C 0.084 3.916 7 C -0.493 4.493 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.425 5.425 11 Si 0.730 3.270 12 H -0.195 1.195 13 H -0.201 1.201 14 H -0.185 1.185 15 C -0.131 4.131 16 C -0.065 4.065 17 C -0.070 4.070 18 C -0.078 4.078 19 C -0.206 4.206 20 C 0.051 3.949 21 N -0.191 5.191 22 C -0.109 4.109 23 C -0.070 4.070 24 N -0.316 5.316 25 C -0.074 4.074 26 C -0.098 4.098 27 N -0.233 5.233 28 C -0.016 4.016 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.102 0.898 42 H 0.156 0.844 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.000 -14.259 -1.149 14.617 hybrid contribution -0.080 2.959 0.236 2.969 sum 2.920 -11.300 -0.913 11.707 Atomic orbital electron populations 1.22726 0.80919 1.01832 1.00349 1.85868 1.19120 1.28267 1.90890 1.18514 0.90689 0.83131 1.10768 1.20363 0.97517 0.92797 1.08056 1.20670 0.94851 0.95182 1.09773 1.17499 0.90561 0.93311 0.90247 1.19426 0.99003 0.95051 1.35777 0.90442 1.25857 0.97898 0.97755 0.92651 1.69822 1.16636 1.33549 1.22486 0.86352 0.78889 0.81592 0.80166 1.19543 1.20126 1.18492 1.21306 0.99911 0.89154 1.02774 1.17718 0.88676 0.91800 1.08319 1.19712 0.95920 0.95402 0.95976 1.21556 0.93135 0.96108 0.96979 1.21330 1.03401 0.94711 1.01134 1.19657 0.93475 0.89397 0.92363 1.59347 1.03147 1.11331 1.45297 1.23017 0.86506 0.99602 1.01755 1.22140 0.98187 0.90104 0.96586 1.60756 1.15901 1.48849 1.06091 1.22208 0.86446 0.95618 1.03174 1.22663 1.01322 0.93379 0.92439 1.67458 1.08463 1.23987 1.23432 1.22553 0.95834 0.87021 0.96193 0.93821 0.93930 0.89985 0.88307 0.88499 0.90892 0.85331 0.84797 0.85410 0.89359 0.93952 0.89824 0.89787 0.84364 0.89962 0.90065 0.93508 0.89183 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -6.41 8.83 -18.54 -0.16 -6.57 16 3 C 0.01 0.28 6.63 -38.44 -0.25 0.02 16 4 C -0.17 -3.62 8.95 -39.90 -0.36 -3.97 16 5 C -0.18 -4.31 9.72 -39.22 -0.38 -4.70 16 6 C 0.09 2.19 5.56 -106.85 -0.59 1.59 16 7 C -0.46 -11.76 9.04 -37.84 -0.34 -12.10 16 8 H 0.08 1.89 7.90 -52.49 -0.41 1.48 16 9 C 0.08 1.82 5.15 -17.35 -0.09 1.73 16 10 N -0.80 -20.04 10.96 55.54 0.61 -19.43 16 11 Si 0.91 18.14 29.59 -169.99 -5.03 13.11 16 12 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 13 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 14 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 15 C -0.11 -2.76 8.16 -38.56 -0.31 -3.07 16 16 C -0.06 -1.45 5.50 -104.80 -0.58 -2.02 16 17 C -0.07 -1.38 5.28 -104.74 -0.55 -1.93 16 18 C -0.05 -0.95 9.66 -38.99 -0.38 -1.33 16 19 C -0.18 -2.98 9.20 -39.28 -0.36 -3.34 16 20 C 0.28 4.69 6.41 -155.01 -0.99 3.70 16 21 N -0.47 -6.48 4.73 -173.02 -0.82 -7.30 16 22 C 0.02 0.22 5.36 -3.77 -0.02 0.20 16 23 C 0.06 0.55 6.72 -3.76 -0.03 0.52 16 24 N -0.69 -6.47 6.91 -113.64 -0.79 -7.25 16 25 C 0.06 0.54 6.72 -3.77 -0.03 0.52 16 26 C 0.03 0.39 4.78 -3.77 -0.02 0.37 16 27 N -0.52 -9.51 8.67 -12.16 -0.11 -9.61 16 28 C 0.14 2.76 9.95 -17.21 -0.17 2.59 16 29 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.04 0.60 7.63 -51.93 -0.40 0.21 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 1.83 6.26 -52.49 -0.33 1.50 16 33 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 35 H 0.13 3.28 6.18 -52.49 -0.32 2.96 16 36 H 0.13 2.32 8.06 -52.48 -0.42 1.89 16 37 H 0.13 1.73 7.16 -52.48 -0.38 1.36 16 38 H 0.09 0.94 6.77 -51.93 -0.35 0.59 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.34 2.93 8.89 -39.29 -0.35 2.58 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.63 8.05 -51.93 -0.42 0.22 16 46 H 0.09 1.23 7.82 -51.93 -0.41 0.82 16 47 H 0.15 2.95 7.68 -52.48 -0.40 2.55 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -27.97 378.85 -11.73 -39.70 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.68 Total: 11.31 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -4.46 Total: -19.66 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: -1.10 Total: -43.59 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.16 Total: -6.57 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.97 -11.73 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240490174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.694 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds