Wall clock time and date at job start Sat Apr 11 2020 05:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35614 * 117.00177 * 2 1 4 4 C 1.39123 * 119.88300 * 359.72802 * 3 2 1 5 5 C 1.36437 * 120.43838 * 179.71418 * 4 3 2 6 6 C 1.40917 * 120.18130 * 0.56194 * 5 4 3 7 7 C 1.41242 * 120.11195 * 179.74179 * 6 5 4 8 8 H 1.07997 * 120.00078 * 334.50816 * 7 6 5 9 9 C 1.39859 * 119.99503 * 154.51645 * 7 6 5 10 10 N 1.30893 * 120.00240 * 343.04062 * 9 7 6 11 11 Si 1.86807 * 119.99848 * 163.05055 * 9 7 6 12 12 H 1.48491 * 109.47036 * 89.99331 * 11 9 7 13 13 H 1.48498 * 109.46849 * 209.99577 * 11 9 7 14 14 H 1.48498 * 109.46666 * 329.99262 * 11 9 7 15 15 C 1.40614 * 119.76725 * 359.71607 * 6 5 4 16 16 C 1.38591 * 119.57074 * 0.02562 * 15 6 5 17 17 C 1.48314 * 120.09875 * 179.97438 * 16 15 6 18 18 C 1.39988 * 120.45553 * 309.73975 * 17 16 15 19 19 C 1.38060 * 118.40116 * 179.75496 * 18 17 16 20 20 C 1.39237 * 119.22088 * 0.54493 * 19 18 17 21 21 N 1.38943 * 119.57137 * 179.71994 * 20 19 18 22 22 C 1.46959 * 111.00141 * 56.17203 * 21 20 19 23 23 C 1.53047 * 109.36473 * 183.18755 * 22 21 20 24 24 N 1.46965 * 109.36812 * 301.60215 * 23 22 21 25 25 C 1.46950 * 110.87583 * 59.31963 * 24 23 22 26 26 C 1.46960 * 111.00346 * 179.97438 * 21 20 19 27 27 N 1.32431 * 120.85985 * 359.69413 * 20 19 18 28 28 C 1.31817 * 121.74609 * 0.02742 * 27 20 19 29 29 H 1.09003 * 109.46448 * 300.00321 * 1 2 3 30 30 H 1.08996 * 109.46785 * 59.99546 * 1 2 3 31 31 H 1.08994 * 109.47341 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.78606 * 0.02562 * 4 3 2 33 33 H 1.07998 * 119.90737 * 180.27905 * 5 4 3 34 34 H 0.97002 * 120.00090 * 180.02562 * 10 9 7 35 35 H 1.07999 * 120.21634 * 180.02562 * 15 6 5 36 36 H 1.08006 * 120.80289 * 0.02562 * 18 17 16 37 37 H 1.08005 * 120.38943 * 180.25949 * 19 18 17 38 38 H 1.08998 * 109.48906 * 303.16043 * 22 21 20 39 39 H 1.09005 * 109.48624 * 63.22618 * 22 21 20 40 40 H 1.09003 * 109.49035 * 181.63538 * 23 22 21 41 41 H 1.08997 * 109.51049 * 61.58067 * 23 22 21 42 42 H 1.00895 * 110.99444 * 295.45219 * 24 23 22 43 43 H 1.09001 * 109.48835 * 180.71379 * 25 24 23 44 44 H 1.09001 * 109.50974 * 60.65980 * 25 24 23 45 45 H 1.09004 * 109.48166 * 296.78010 * 26 21 20 46 46 H 1.08994 * 109.48805 * 56.84146 * 26 21 20 47 47 H 1.08011 * 119.65555 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2083 0.0000 4 6 1.2847 2.3736 -0.0057 5 6 1.8923 3.5952 0.0001 6 6 3.2985 3.6870 0.0000 7 6 3.9260 4.9524 0.0005 8 1 3.4095 5.8114 -0.4016 9 6 5.2162 5.0928 0.5216 10 7 5.7138 4.1628 1.2968 11 14 6.2294 6.6078 0.1116 12 1 5.9736 7.6632 1.1243 13 1 7.6718 6.2551 0.1176 14 1 5.8479 7.1091 -1.2331 15 6 4.0747 2.5145 0.0000 16 6 3.4471 1.2788 -0.0005 17 6 4.2544 0.0346 -0.0011 18 6 5.2877 -0.1403 -0.9292 19 6 6.0154 -1.3128 -0.8884 20 6 5.6930 -2.2803 0.0595 21 7 6.4169 -3.4655 0.1033 22 6 7.8527 -3.1999 0.2689 23 6 8.6211 -4.5230 0.2325 24 7 8.1250 -5.4041 1.2990 25 6 6.6892 -5.6697 1.1333 26 6 5.9208 -4.3466 1.1697 27 7 4.7057 -2.0855 0.9204 28 6 3.9913 -0.9777 0.9172 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2066 2.3108 -0.0097 33 1 1.2939 4.4942 0.0001 34 1 6.6086 4.2604 1.6585 35 1 5.1529 2.5764 0.0003 36 1 5.5131 0.6254 -1.6568 37 1 6.8224 -1.4796 -1.5866 38 1 8.1990 -2.5559 -0.5395 39 1 8.0233 -2.7065 1.2258 40 1 9.6833 -4.3310 0.3842 41 1 8.4729 -5.0036 -0.7345 42 1 8.3179 -5.0140 2.2092 43 1 6.3428 -6.3137 1.9416 44 1 6.5183 -6.1633 0.1765 45 1 6.0694 -3.8662 2.1368 46 1 4.8587 -4.5387 1.0181 47 1 3.1932 -0.8543 1.6345 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240490174.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:34 Heat of formation + Delta-G solvation = 18.637387 kcal Electronic energy + Delta-G solvation = -28944.074660 eV Core-core repulsion = 25091.115067 eV Total energy + Delta-G solvation = -3852.959594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.79434 -40.58777 -39.44613 -38.09969 -35.77670 -35.11300 -33.80588 -32.63285 -31.84528 -30.97410 -29.58942 -28.34429 -26.71687 -26.31189 -25.30237 -23.84078 -23.55062 -22.42851 -21.93495 -21.39663 -19.26255 -18.73784 -18.50551 -17.59977 -17.05936 -16.77729 -16.46287 -16.33941 -16.12823 -15.95413 -15.69194 -15.51660 -15.18065 -14.99612 -14.83265 -14.59982 -14.23786 -14.12699 -13.89175 -13.74684 -13.32808 -13.25568 -13.16798 -12.82484 -12.71912 -12.43439 -12.36066 -12.34480 -12.29798 -12.05609 -11.78821 -11.60390 -11.34892 -11.07969 -10.83216 -10.78029 -10.46724 -9.64378 -9.46595 -9.05899 -8.70212 -8.53167 -6.23572 0.00205 0.30829 0.97642 1.02504 1.39340 1.48142 1.54198 2.22158 2.37972 2.66431 2.78184 2.90350 3.29955 3.42986 3.64973 3.86670 3.92873 3.99403 4.05122 4.12394 4.17875 4.20061 4.27713 4.33134 4.35798 4.44533 4.48509 4.58358 4.63224 4.71261 4.74014 4.76436 4.86584 5.00023 5.01310 5.05225 5.11152 5.16420 5.27074 5.30283 5.45290 5.54143 5.58647 5.69153 5.85891 5.94630 6.04150 6.10478 6.24353 6.37943 6.55692 6.78650 6.95093 6.97462 7.07189 8.36881 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003276 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.803315 B = 8543.837750 C =10669.402602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.337 6.337 3 C 0.018 3.982 4 C -0.169 4.169 5 C -0.198 4.198 6 C 0.055 3.945 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.036 3.964 10 N -0.832 5.832 11 Si 0.976 3.024 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.259 1.259 15 C -0.129 4.129 16 C -0.070 4.070 17 C -0.095 4.095 18 C -0.057 4.057 19 C -0.177 4.177 20 C 0.284 3.716 21 N -0.472 5.472 22 C 0.018 3.982 23 C 0.067 3.933 24 N -0.688 5.688 25 C 0.066 3.934 26 C 0.034 3.966 27 N -0.529 5.529 28 C 0.136 3.864 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.285 0.715 35 H 0.112 0.888 36 H 0.137 0.863 37 H 0.159 0.841 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.345 0.655 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.034 0.966 46 H 0.075 0.925 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -14.087 -1.676 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.253 6.253 3 C -0.027 4.027 4 C -0.187 4.187 5 C -0.217 4.217 6 C 0.052 3.948 7 C -0.528 4.528 8 H 0.094 0.906 9 C -0.177 4.177 10 N -0.459 5.459 11 Si 0.798 3.202 12 H -0.190 1.190 13 H -0.193 1.193 14 H -0.182 1.182 15 C -0.149 4.149 16 C -0.072 4.072 17 C -0.098 4.098 18 C -0.083 4.083 19 C -0.199 4.199 20 C 0.052 3.948 21 N -0.191 5.191 22 C -0.109 4.109 23 C -0.063 4.063 24 N -0.316 5.316 25 C -0.065 4.065 26 C -0.095 4.095 27 N -0.243 5.243 28 C -0.021 4.021 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.129 0.871 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.115 0.885 39 H 0.051 0.949 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.163 0.837 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.093 0.907 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.778 -15.900 -1.676 16.428 hybrid contribution -0.411 3.216 0.399 3.267 sum 3.367 -12.684 -1.277 13.185 Atomic orbital electron populations 1.23082 0.78265 1.04233 1.01200 1.85866 1.21827 1.27012 1.90546 1.18672 0.90753 0.84151 1.09081 1.20660 0.99183 0.91939 1.06937 1.20876 0.94378 0.96453 1.10019 1.17847 0.91779 0.93791 0.91336 1.19657 1.00434 0.95229 1.37434 0.90608 1.26642 0.98441 1.00725 0.91910 1.69896 1.17152 1.35458 1.23382 0.85287 0.77327 0.77772 0.79855 1.18965 1.19317 1.18237 1.21165 0.99142 0.89987 1.04583 1.17946 0.89736 0.92139 1.07331 1.19686 0.97279 0.95075 0.97791 1.21678 0.92809 0.97069 0.96711 1.21593 1.03474 0.93554 1.01245 1.20099 0.92898 0.90238 0.91560 1.59423 1.04283 1.09859 1.45491 1.23170 0.84883 1.01264 1.01617 1.22183 0.98966 0.88590 0.96603 1.60774 1.15325 1.48887 1.06592 1.22169 0.86349 0.94022 1.03918 1.22696 1.01043 0.94446 0.91332 1.67496 1.09173 1.23496 1.24132 1.22426 0.96142 0.87375 0.96116 0.92919 0.92959 0.86984 0.85134 0.87582 0.90458 0.87056 0.84499 0.82299 0.88462 0.94853 0.87607 0.89600 0.83746 0.88254 0.90040 0.94738 0.90658 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.34 -13.01 8.83 -89.26 -0.79 -13.80 16 3 C 0.02 0.78 6.63 23.01 0.15 0.93 16 4 C -0.17 -7.20 8.95 22.06 0.20 -7.01 16 5 C -0.20 -9.42 9.72 22.51 0.22 -9.20 16 6 C 0.05 2.89 5.56 -21.31 -0.12 2.77 16 7 C -0.50 -26.32 9.04 23.40 0.21 -26.11 16 8 H 0.08 3.86 7.90 -2.91 -0.02 3.83 16 9 C 0.04 1.82 5.15 85.23 0.44 2.26 16 10 N -0.83 -43.32 10.96 21.81 0.24 -43.08 16 11 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 12 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 13 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 15 C -0.13 -6.68 8.16 22.93 0.19 -6.49 16 16 C -0.07 -3.29 5.50 -19.98 -0.11 -3.40 16 17 C -0.10 -4.00 5.28 -19.94 -0.11 -4.11 16 18 C -0.06 -2.10 9.66 22.65 0.22 -1.88 16 19 C -0.18 -5.55 9.20 22.47 0.21 -5.34 16 20 C 0.28 9.21 6.41 133.10 0.85 10.06 16 21 N -0.47 -12.19 4.73 -701.30 -3.32 -15.50 16 22 C 0.02 0.37 5.36 86.31 0.46 0.83 16 23 C 0.07 1.01 6.72 86.31 0.58 1.59 16 24 N -0.69 -11.06 6.91 -513.44 -3.55 -14.61 16 25 C 0.07 1.13 6.72 86.31 0.58 1.71 16 26 C 0.03 0.80 4.78 86.31 0.41 1.21 16 27 N -0.53 -19.37 8.67 -192.39 -1.67 -21.04 16 28 C 0.14 5.43 9.95 84.92 0.84 6.28 16 29 H 0.05 1.38 7.66 -2.39 -0.02 1.36 16 30 H 0.05 1.36 7.63 -2.39 -0.02 1.34 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.13 4.62 6.26 -2.91 -0.02 4.60 16 33 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.28 13.56 8.30 -92.71 -0.77 12.79 16 35 H 0.11 6.03 6.18 -2.91 -0.02 6.02 16 36 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 37 H 0.16 3.91 7.16 -2.91 -0.02 3.89 16 38 H 0.10 1.80 6.77 -2.39 -0.02 1.79 16 39 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.34 5.10 8.89 -89.70 -0.80 4.30 16 43 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.03 0.91 8.05 -2.38 -0.02 0.89 16 46 H 0.07 2.01 7.82 -2.39 -0.02 1.99 16 47 H 0.15 5.87 7.68 -2.90 -0.02 5.85 16 Total: -1.00 -62.63 378.85 -0.51 -63.15 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.20 Total: 39.00 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 6.34 Total: -34.03 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -8.30 Total: -94.23 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.79 Total: -13.80 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -62.63 -0.51 -63.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240490174.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.784 kcal (2) G-P(sol) polarization free energy of solvation -62.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds