Wall clock time and date at job start Sat Apr 11 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46953 * 110.99868 * 2 1 4 4 C 1.53046 * 109.36495 * 183.19106 * 3 2 1 5 5 N 1.46957 * 109.36235 * 301.59839 * 4 3 2 6 6 C 1.39490 * 111.00008 * 183.18917 * 5 4 3 7 7 C 1.39061 * 119.94761 * 0.26951 * 6 5 4 8 8 C 1.37805 * 120.04839 * 180.27697 * 7 6 5 9 9 C 1.39488 * 119.95193 * 359.47423 * 8 7 6 10 10 C 1.48202 * 120.05521 * 180.27399 * 9 8 7 11 11 C 1.39473 * 119.65856 * 179.97438 * 10 9 8 12 12 C 1.38190 * 119.14705 * 179.97438 * 11 10 9 13 13 C 1.39450 * 118.45827 * 0.02562 * 12 11 10 14 14 O 1.35726 * 120.38050 * 180.02562 * 13 12 11 15 15 C 1.34813 * 116.99699 * 354.51872 * 14 13 12 16 16 H 1.07998 * 120.00297 * 5.05440 * 15 14 13 17 17 C 1.38641 * 119.99474 * 185.05688 * 15 14 13 18 18 N 1.31564 * 120.00567 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47094 * 89.99720 * 19 17 15 21 21 H 1.48489 * 109.47529 * 209.99915 * 19 17 15 22 22 H 1.48503 * 109.46988 * 330.00566 * 19 17 15 23 23 C 1.38924 * 119.24093 * 359.97438 * 13 12 11 24 24 N 1.31689 * 120.79046 * 359.73018 * 23 13 12 25 25 C 1.39487 * 119.89457 * 0.25147 * 9 8 7 26 26 C 1.37809 * 119.95023 * 0.02562 * 25 9 8 27 27 C 1.46959 * 110.88268 * 59.31834 * 5 4 3 28 28 C 1.46957 * 111.00101 * 123.79578 * 2 1 3 29 29 H 1.08994 * 109.47065 * 60.00327 * 1 2 3 30 30 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46990 * 300.00031 * 1 2 3 32 32 H 1.08997 * 109.48829 * 63.21777 * 3 2 1 33 33 H 1.09007 * 109.50643 * 303.16855 * 3 2 1 34 34 H 1.09002 * 109.49356 * 181.62839 * 4 3 2 35 35 H 1.09007 * 109.50801 * 61.57232 * 4 3 2 36 36 H 1.08000 * 119.97330 * 0.02562 * 7 6 5 37 37 H 1.08007 * 120.02503 * 179.75013 * 8 7 6 38 38 H 1.07997 * 120.42974 * 359.97438 * 11 10 9 39 39 H 1.07999 * 120.77425 * 180.02562 * 12 11 10 40 40 H 0.96994 * 120.00390 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.60528 * 180.02562 * 23 13 12 42 42 H 1.07998 * 120.02134 * 180.02562 * 25 9 8 43 43 H 1.08001 * 119.97615 * 180.02562 * 26 25 9 44 44 H 1.08997 * 109.48524 * 60.65157 * 27 5 4 45 45 H 1.09002 * 109.48390 * 180.71161 * 27 5 4 46 46 H 1.08998 * 109.48885 * 296.78107 * 28 2 1 47 47 H 1.09010 * 109.48523 * 56.84483 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.4450 0.5659 1.0597 7 6 6.1392 1.2410 0.0616 8 6 7.5172 1.2376 0.0563 9 6 8.2158 0.5656 1.0594 10 6 9.6978 0.5656 1.0593 11 6 10.3880 -0.1086 2.0666 12 6 11.7698 -0.1022 2.0560 13 6 12.4234 0.5830 1.0323 14 8 13.7794 0.6142 0.9838 15 6 14.4417 0.0586 2.0183 16 1 13.8958 -0.4560 2.7951 17 6 15.8236 0.1481 2.0848 18 7 16.4887 0.7747 1.1383 19 14 16.7414 -0.6211 3.5186 20 1 17.0965 -2.0236 3.1838 21 1 17.9801 0.1529 3.7859 22 1 15.8769 -0.6042 4.7259 23 6 11.6706 1.2325 0.0620 24 7 10.3545 1.2022 0.0976 25 6 7.5173 -0.1060 2.0627 26 6 6.1392 -0.1047 2.0607 27 6 3.5234 -0.8061 1.0598 28 6 1.9958 -0.7631 1.1401 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6937 1.8773 0.9173 33 1 1.6013 1.9132 -0.8601 34 1 3.9178 2.3449 -0.0514 35 1 3.8257 0.8481 -1.0107 36 1 5.5979 1.7648 -0.7123 37 1 8.0560 1.7586 -0.7214 38 1 9.8495 -0.6289 2.8447 39 1 12.3307 -0.6159 2.8228 40 1 17.4555 0.8375 1.1850 41 1 12.1706 1.7645 -0.7338 42 1 8.0562 -0.6266 2.8405 43 1 5.5980 -0.6242 2.8376 44 1 3.8254 -1.3115 0.1425 45 1 3.9179 -1.3469 1.9201 46 1 1.6938 -0.2819 2.0704 47 1 1.6014 -1.7790 1.1111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240851541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:39 Heat of formation + Delta-G solvation = 57.547569 kcal Electronic energy + Delta-G solvation = -27598.299879 eV Core-core repulsion = 23747.027558 eV Total energy + Delta-G solvation = -3851.272322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.53001 -39.65364 -38.37109 -37.16219 -35.46968 -32.57210 -31.93755 -31.52555 -31.09853 -30.38040 -28.96611 -27.05189 -25.51038 -24.61842 -24.22842 -23.04822 -22.47543 -21.35582 -20.90158 -19.90568 -18.19721 -17.85176 -17.14611 -16.23789 -15.84897 -15.58989 -15.46014 -15.24076 -15.05280 -14.70893 -14.60804 -14.16588 -14.10694 -13.96371 -13.65324 -13.40185 -13.27329 -12.96863 -12.78014 -12.59983 -12.45285 -12.17872 -11.98322 -11.88915 -11.84170 -11.65875 -11.44256 -11.22649 -11.14295 -11.02849 -10.75238 -10.60425 -9.86107 -9.78562 -9.12550 -8.93487 -8.80406 -8.80126 -8.78002 -8.13851 -7.03588 -6.64543 -4.20698 1.12301 1.59675 2.02542 2.35593 3.03079 3.04147 3.09028 3.46734 3.53078 3.81147 3.96944 4.45095 4.58780 4.64709 4.68786 4.75384 4.88548 4.93601 4.96660 4.99605 5.04847 5.11687 5.14247 5.15168 5.19366 5.37240 5.41516 5.43638 5.46318 5.51016 5.52258 5.60566 5.66798 5.76654 5.80593 5.92738 6.05354 6.21594 6.28255 6.35278 6.54967 6.56759 6.57967 6.74307 6.83044 6.91138 6.95978 6.96655 7.16615 7.31338 7.45484 7.77868 8.72034 8.80044 9.44103 10.51703 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039190 B = 0.001749 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.295820 B =16004.386616 C =16578.680456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.055 3.945 4 C 0.052 3.948 5 N -0.490 5.490 6 C 0.094 3.906 7 C -0.168 4.168 8 C -0.073 4.073 9 C -0.025 4.025 10 C 0.044 3.956 11 C -0.102 4.102 12 C -0.201 4.201 13 C 0.106 3.894 14 O -0.160 6.160 15 C -0.394 4.394 16 H 0.095 0.905 17 C 0.043 3.957 18 N -0.851 5.851 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.266 1.266 23 C 0.034 3.966 24 N -0.434 5.434 25 C -0.097 4.097 26 C -0.136 4.136 27 C 0.059 3.941 28 C 0.055 3.945 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.274 0.726 41 H 0.153 0.847 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.044 0.956 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.700 -2.193 0.645 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.073 4.073 4 C -0.075 4.075 5 N -0.206 5.206 6 C -0.003 4.003 7 C -0.189 4.189 8 C -0.092 4.092 9 C -0.027 4.027 10 C -0.091 4.091 11 C -0.122 4.122 12 C -0.227 4.227 13 C 0.048 3.952 14 O -0.060 6.060 15 C -0.470 4.470 16 H 0.112 0.888 17 C -0.164 4.164 18 N -0.484 5.484 19 Si 0.769 3.231 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.190 1.190 23 C -0.129 4.129 24 N -0.143 5.143 25 C -0.117 4.117 26 C -0.157 4.157 27 C -0.067 4.067 28 C -0.073 4.073 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.155 0.845 40 H 0.084 0.916 41 H 0.170 0.830 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -26.807 -1.643 -0.213 26.859 hybrid contribution 0.971 -0.756 1.583 2.005 sum -25.837 -2.400 1.370 25.984 Atomic orbital electron populations 1.22348 0.86980 1.02174 1.00773 1.62167 1.07995 1.14052 1.42933 1.22212 0.94402 0.89324 1.01333 1.22336 0.94038 0.99112 0.92000 1.59256 1.05486 1.14037 1.41816 1.18838 0.87366 0.98925 0.95215 1.21194 0.94683 1.04383 0.98595 1.21133 0.92876 0.97266 0.97972 1.18459 0.90648 0.98143 0.95430 1.19083 0.91859 1.03095 0.95021 1.21697 0.93998 0.98382 0.98156 1.21466 0.94199 1.05243 1.01812 1.20542 0.85851 0.94181 0.94590 1.83961 1.11796 1.67737 1.42502 1.21404 0.89625 1.34609 1.01345 0.88809 1.25366 0.95586 0.96699 0.98725 1.70031 1.08659 1.37879 1.31835 0.85652 0.78995 0.78908 0.79585 1.19646 1.20015 1.19021 1.21746 0.88099 1.03043 1.00045 1.67346 1.08570 1.15645 1.22744 1.21029 0.93389 0.99045 0.98189 1.20541 0.93660 1.02847 0.98613 1.22299 0.94025 0.88093 1.02238 1.22215 0.94390 0.98699 0.92008 0.91239 0.91285 0.95542 0.93836 0.89927 0.89398 0.92667 0.85887 0.84949 0.86103 0.84487 0.91589 0.83006 0.85736 0.86124 0.92968 0.89520 0.93813 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.60 60.07 0.58 0.73 16 2 N -0.55 -4.35 4.97 -242.75 -1.21 -5.56 16 3 C 0.06 0.43 5.62 -3.77 -0.02 0.41 16 4 C 0.05 0.48 4.29 -3.77 -0.02 0.46 16 5 N -0.49 -5.15 4.75 -170.92 -0.81 -5.96 16 6 C 0.09 1.16 5.64 -83.77 -0.47 0.69 16 7 C -0.17 -2.17 8.80 -39.43 -0.35 -2.52 16 8 C -0.07 -1.11 9.56 -39.27 -0.38 -1.49 16 9 C -0.03 -0.41 5.88 -104.87 -0.62 -1.03 16 10 C 0.04 0.83 6.73 -82.93 -0.56 0.27 16 11 C -0.10 -1.89 9.45 -39.14 -0.37 -2.26 16 12 C -0.20 -4.23 9.25 -39.15 -0.36 -4.59 16 13 C 0.11 2.49 6.67 -38.88 -0.26 2.23 16 14 O -0.16 -4.35 9.76 0.17 0.00 -4.34 16 15 C -0.39 -10.47 9.49 30.88 0.29 -10.17 16 16 H 0.09 2.28 5.25 -52.49 -0.28 2.01 16 17 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 18 N -0.85 -23.82 13.67 55.48 0.76 -23.06 16 19 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 23 C 0.03 0.74 11.14 -17.36 -0.19 0.55 16 24 N -0.43 -8.87 9.41 -9.62 -0.09 -8.96 16 25 C -0.10 -1.35 9.41 -39.27 -0.37 -1.72 16 26 C -0.14 -1.69 9.17 -39.43 -0.36 -2.05 16 27 C 0.06 0.54 5.38 -3.77 -0.02 0.52 16 28 C 0.06 0.42 5.62 -3.77 -0.02 0.40 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 8.13 -51.93 -0.42 -0.07 16 31 H 0.03 0.15 8.14 -51.92 -0.42 -0.27 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.09 0.76 7.14 -51.93 -0.37 0.39 16 35 H 0.06 0.53 7.59 -51.93 -0.39 0.14 16 36 H 0.12 1.34 5.79 -52.49 -0.30 1.04 16 37 H 0.13 2.05 7.53 -52.48 -0.39 1.66 16 38 H 0.12 1.82 6.17 -52.49 -0.32 1.49 16 39 H 0.14 2.78 5.75 -52.49 -0.30 2.47 16 40 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.15 3.05 8.06 -52.49 -0.42 2.63 16 42 H 0.12 1.53 6.16 -52.49 -0.32 1.21 16 43 H 0.12 1.25 7.17 -52.49 -0.38 0.87 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.71 6.80 -51.93 -0.35 0.36 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.52 8.13 -51.92 -0.42 0.10 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -30.03 377.46 -10.63 -40.66 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.36 Total: 5.60 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -3.59 Total: -18.56 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: -1.35 Total: -43.53 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: 0.00 Total: -4.34 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.03 -10.63 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240851541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.211 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds