Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46953 * 110.99868 * 2 1 4 4 C 1.53046 * 109.36495 * 183.19106 * 3 2 1 5 5 N 1.46957 * 109.36235 * 301.59839 * 4 3 2 6 6 C 1.39490 * 111.00008 * 183.18917 * 5 4 3 7 7 C 1.39061 * 119.94761 * 0.26951 * 6 5 4 8 8 C 1.37805 * 120.04839 * 180.27697 * 7 6 5 9 9 C 1.39488 * 119.95193 * 359.47423 * 8 7 6 10 10 C 1.48202 * 120.05521 * 180.27399 * 9 8 7 11 11 C 1.39473 * 119.65856 * 179.97438 * 10 9 8 12 12 C 1.38190 * 119.14705 * 179.97438 * 11 10 9 13 13 C 1.39450 * 118.45827 * 0.02562 * 12 11 10 14 14 O 1.35726 * 120.38050 * 180.02562 * 13 12 11 15 15 C 1.34813 * 116.99699 * 354.51872 * 14 13 12 16 16 H 1.07998 * 120.00297 * 5.05440 * 15 14 13 17 17 C 1.38641 * 119.99474 * 185.05688 * 15 14 13 18 18 N 1.31564 * 120.00567 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99856 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47094 * 89.99720 * 19 17 15 21 21 H 1.48489 * 109.47529 * 209.99915 * 19 17 15 22 22 H 1.48503 * 109.46988 * 330.00566 * 19 17 15 23 23 C 1.38924 * 119.24093 * 359.97438 * 13 12 11 24 24 N 1.31689 * 120.79046 * 359.73018 * 23 13 12 25 25 C 1.39487 * 119.89457 * 0.25147 * 9 8 7 26 26 C 1.37809 * 119.95023 * 0.02562 * 25 9 8 27 27 C 1.46959 * 110.88268 * 59.31834 * 5 4 3 28 28 C 1.46957 * 111.00101 * 123.79578 * 2 1 3 29 29 H 1.08994 * 109.47065 * 60.00327 * 1 2 3 30 30 H 1.09000 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46990 * 300.00031 * 1 2 3 32 32 H 1.08997 * 109.48829 * 63.21777 * 3 2 1 33 33 H 1.09007 * 109.50643 * 303.16855 * 3 2 1 34 34 H 1.09002 * 109.49356 * 181.62839 * 4 3 2 35 35 H 1.09007 * 109.50801 * 61.57232 * 4 3 2 36 36 H 1.08000 * 119.97330 * 0.02562 * 7 6 5 37 37 H 1.08007 * 120.02503 * 179.75013 * 8 7 6 38 38 H 1.07997 * 120.42974 * 359.97438 * 11 10 9 39 39 H 1.07999 * 120.77425 * 180.02562 * 12 11 10 40 40 H 0.96994 * 120.00390 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.60528 * 180.02562 * 23 13 12 42 42 H 1.07998 * 120.02134 * 180.02562 * 25 9 8 43 43 H 1.08001 * 119.97615 * 180.02562 * 26 25 9 44 44 H 1.08997 * 109.48524 * 60.65157 * 27 5 4 45 45 H 1.09002 * 109.48390 * 180.71161 * 27 5 4 46 46 H 1.08998 * 109.48885 * 296.78107 * 28 2 1 47 47 H 1.09010 * 109.48523 * 56.84483 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3291 -0.0804 5 7 4.0501 0.5659 1.0597 6 6 5.4450 0.5659 1.0597 7 6 6.1392 1.2410 0.0616 8 6 7.5172 1.2376 0.0563 9 6 8.2158 0.5656 1.0594 10 6 9.6978 0.5656 1.0593 11 6 10.3880 -0.1086 2.0666 12 6 11.7698 -0.1022 2.0560 13 6 12.4234 0.5830 1.0323 14 8 13.7794 0.6142 0.9838 15 6 14.4417 0.0586 2.0183 16 1 13.8958 -0.4560 2.7951 17 6 15.8236 0.1481 2.0848 18 7 16.4887 0.7747 1.1383 19 14 16.7414 -0.6211 3.5186 20 1 17.0965 -2.0236 3.1838 21 1 17.9801 0.1529 3.7859 22 1 15.8769 -0.6042 4.7259 23 6 11.6706 1.2325 0.0620 24 7 10.3545 1.2022 0.0976 25 6 7.5173 -0.1060 2.0627 26 6 6.1392 -0.1047 2.0607 27 6 3.5234 -0.8061 1.0598 28 6 1.9958 -0.7631 1.1401 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6937 1.8773 0.9173 33 1 1.6013 1.9132 -0.8601 34 1 3.9178 2.3449 -0.0514 35 1 3.8257 0.8481 -1.0107 36 1 5.5979 1.7648 -0.7123 37 1 8.0560 1.7586 -0.7214 38 1 9.8495 -0.6289 2.8447 39 1 12.3307 -0.6159 2.8228 40 1 17.4555 0.8375 1.1850 41 1 12.1706 1.7645 -0.7338 42 1 8.0562 -0.6266 2.8405 43 1 5.5980 -0.6242 2.8376 44 1 3.8254 -1.3115 0.1425 45 1 3.9179 -1.3469 1.9201 46 1 1.6938 -0.2819 2.0704 47 1 1.6014 -1.7790 1.1111 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240851541.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = 38.544246 kcal Electronic energy + Delta-G solvation = -27599.123925 eV Core-core repulsion = 23747.027558 eV Total energy + Delta-G solvation = -3852.096367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.57735 -41.11376 -39.51669 -38.63260 -36.36384 -34.42426 -33.24363 -32.56195 -32.38858 -31.37319 -30.06090 -28.24749 -27.16575 -25.49189 -25.03956 -24.43662 -23.79349 -22.46448 -22.06055 -20.72939 -19.97736 -19.19270 -18.46975 -17.57411 -17.21848 -16.42495 -16.36528 -16.21582 -16.06978 -15.89120 -15.77137 -15.51555 -15.40256 -15.20342 -14.81048 -14.64272 -14.42742 -14.37431 -14.06541 -13.61640 -13.55825 -13.39977 -13.31136 -12.99506 -12.75026 -12.67210 -12.47642 -12.26134 -12.19658 -12.14510 -11.89201 -11.69681 -11.66480 -11.02790 -10.77015 -10.52866 -10.42441 -9.86899 -9.49961 -9.33908 -8.53253 -8.41025 -6.20195 -0.18141 0.36782 0.52870 0.91656 1.36232 1.45746 1.53786 2.13788 2.54868 2.78822 2.94831 2.97556 3.18747 3.28319 3.53044 3.75530 3.80355 3.94856 4.00127 4.02306 4.07247 4.20371 4.21694 4.27857 4.33941 4.46279 4.49909 4.54006 4.60304 4.62897 4.67628 4.72658 4.78574 4.84710 4.85696 4.93110 4.96319 5.01821 5.04510 5.15121 5.22139 5.29361 5.38641 5.41642 5.74964 5.76092 5.82075 5.91949 5.94904 6.04461 6.07814 6.33818 6.89511 7.08375 7.62957 8.68400 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.039190 B = 0.001749 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.295820 B =16004.386616 C =16578.680456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.059 3.941 4 C 0.050 3.950 5 N -0.493 5.493 6 C 0.107 3.893 7 C -0.173 4.173 8 C -0.078 4.078 9 C -0.065 4.065 10 C 0.065 3.935 11 C -0.102 4.102 12 C -0.195 4.195 13 C 0.074 3.926 14 O -0.211 6.211 15 C -0.418 4.418 16 H 0.108 0.892 17 C -0.017 4.017 18 N -0.912 5.912 19 Si 1.020 2.980 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.250 1.250 23 C 0.025 3.975 24 N -0.446 5.446 25 C -0.086 4.086 26 C -0.137 4.137 27 C 0.059 3.941 28 C 0.058 3.942 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.165 0.835 39 H 0.144 0.856 40 H 0.276 0.724 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.043 0.957 45 H 0.098 0.902 46 H 0.042 0.958 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.764 -3.595 2.603 31.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.069 4.069 4 C -0.077 4.077 5 N -0.208 5.208 6 C 0.009 3.991 7 C -0.193 4.193 8 C -0.098 4.098 9 C -0.067 4.067 10 C -0.071 4.071 11 C -0.122 4.122 12 C -0.221 4.221 13 C 0.020 3.980 14 O -0.116 6.116 15 C -0.494 4.494 16 H 0.125 0.875 17 C -0.216 4.216 18 N -0.548 5.548 19 Si 0.839 3.161 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.174 1.174 23 C -0.136 4.136 24 N -0.156 5.156 25 C -0.105 4.105 26 C -0.157 4.157 27 C -0.066 4.066 28 C -0.070 4.070 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.138 0.862 38 H 0.182 0.818 39 H 0.162 0.838 40 H 0.085 0.915 41 H 0.171 0.829 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.061 0.939 45 H 0.116 0.884 46 H 0.060 0.940 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -30.943 -3.039 1.724 31.139 hybrid contribution 1.560 -0.291 0.900 1.824 sum -29.383 -3.330 2.624 29.687 Atomic orbital electron populations 1.22383 0.85723 1.02874 1.01181 1.62197 1.09228 1.14001 1.43112 1.22186 0.93319 0.89595 1.01785 1.22404 0.95107 0.98964 0.91219 1.59272 1.04225 1.15088 1.42246 1.19098 0.88468 0.97160 0.94341 1.21346 0.93809 1.04768 0.99411 1.21140 0.93912 0.97158 0.97571 1.18471 0.88951 1.01441 0.97819 1.19798 0.93655 1.00078 0.93560 1.22090 0.92939 0.98142 0.98982 1.21701 0.95453 1.04084 1.00897 1.20927 0.85318 0.95589 0.96155 1.83950 1.13337 1.70425 1.43838 1.21902 0.90367 1.35231 1.01920 0.87507 1.26631 0.96227 0.97097 1.01659 1.70174 1.08938 1.41050 1.34672 0.84560 0.77454 0.77985 0.76082 1.18720 1.19686 1.17377 1.21866 0.88655 1.03065 1.00014 1.67453 1.07788 1.16551 1.23765 1.21234 0.94089 0.97780 0.97424 1.20825 0.93194 1.02628 0.99099 1.22378 0.95062 0.86939 1.02267 1.22212 0.93331 0.99570 0.91878 0.90612 0.90489 0.95343 0.94190 0.88602 0.89115 0.93140 0.84165 0.86161 0.81798 0.83841 0.91533 0.82875 0.83794 0.83443 0.93889 0.88400 0.93964 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.60 127.69 1.23 1.46 16 2 N -0.56 -7.28 4.97 -921.93 -4.58 -11.86 16 3 C 0.06 0.76 5.62 86.31 0.49 1.24 16 4 C 0.05 0.78 4.29 86.31 0.37 1.15 16 5 N -0.49 -8.77 4.75 -694.68 -3.30 -12.06 16 6 C 0.11 2.31 5.64 38.32 0.22 2.53 16 7 C -0.17 -4.09 8.80 22.36 0.20 -3.89 16 8 C -0.08 -2.28 9.56 22.47 0.21 -2.07 16 9 C -0.07 -2.00 5.88 -20.03 -0.12 -2.12 16 10 C 0.07 2.41 6.73 41.96 0.28 2.69 16 11 C -0.10 -3.58 9.45 22.56 0.21 -3.36 16 12 C -0.20 -8.18 9.25 22.55 0.21 -7.97 16 13 C 0.07 3.63 6.67 22.73 0.15 3.79 16 14 O -0.21 -12.25 9.76 -22.30 -0.22 -12.47 16 15 C -0.42 -23.22 9.49 67.92 0.64 -22.58 16 16 H 0.11 5.33 5.25 -2.91 -0.02 5.31 16 17 C -0.02 -0.93 5.49 84.83 0.47 -0.46 16 18 N -0.91 -54.00 13.67 21.61 0.30 -53.71 16 19 Si 1.02 40.80 29.55 68.60 2.03 42.82 16 20 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 23 C 0.02 1.13 11.14 84.88 0.95 2.07 16 24 N -0.45 -18.49 9.41 -184.36 -1.73 -20.22 16 25 C -0.09 -2.07 9.41 22.47 0.21 -1.86 16 26 C -0.14 -2.85 9.17 22.37 0.21 -2.64 16 27 C 0.06 0.87 5.38 86.31 0.46 1.33 16 28 C 0.06 0.70 5.62 86.31 0.49 1.19 16 29 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.57 8.13 -2.39 -0.02 0.55 16 31 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 1.35 7.14 -2.39 -0.02 1.33 16 35 H 0.05 0.85 7.59 -2.38 -0.02 0.83 16 36 H 0.14 2.76 5.79 -2.91 -0.02 2.75 16 37 H 0.12 3.73 7.53 -2.91 -0.02 3.71 16 38 H 0.16 4.26 6.17 -2.91 -0.02 4.24 16 39 H 0.14 5.76 5.75 -2.91 -0.02 5.74 16 40 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 41 H 0.15 6.64 8.06 -2.91 -0.02 6.62 16 42 H 0.14 2.85 6.16 -2.91 -0.02 2.83 16 43 H 0.15 2.30 7.17 -2.91 -0.02 2.28 16 44 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 1.21 6.80 -2.39 -0.02 1.20 16 46 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 0.90 8.13 -2.38 -0.02 0.88 16 Total: -1.00 -69.07 377.46 0.35 -68.72 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: 0.99 Total: 28.29 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 6.87 Total: -29.50 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -9.32 Total: -97.86 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.22 Total: -12.47 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -69.07 0.35 -68.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240851541.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.265 kcal (2) G-P(sol) polarization free energy of solvation -69.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds