Wall clock time and date at job start Sat Apr 11 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00350 * 2 1 4 4 C 1.46898 * 110.99945 * 123.95559 * 2 1 3 5 5 C 1.53002 * 109.47096 * 169.99564 * 4 2 1 6 6 N 1.46502 * 109.47007 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99869 * 180.02562 * 6 5 4 8 8 O 1.21569 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.47724 * 119.99966 * 180.02562 * 7 6 5 10 10 C 1.39701 * 120.02628 * 179.97438 * 9 7 6 11 11 C 1.37667 * 119.97559 * 179.97438 * 10 9 7 12 12 C 1.39494 * 120.02685 * 359.97438 * 11 10 9 13 13 C 1.48307 * 119.97513 * 180.02562 * 12 11 10 14 14 C 1.39762 * 120.41657 * 359.97438 * 13 12 11 15 15 N 1.31898 * 121.13986 * 179.97438 * 14 13 12 16 16 C 1.31526 * 122.13157 * 0.02562 * 15 14 13 17 17 C 1.40779 * 120.67961 * 0.02620 * 16 15 14 18 18 C 1.41443 * 120.59813 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00363 * 23.39604 * 18 17 16 20 20 C 1.39943 * 119.99358 * 203.39094 * 18 17 16 21 21 N 1.30821 * 120.00214 * 17.37042 * 20 18 17 22 22 Si 1.86798 * 119.99651 * 197.36025 * 20 18 17 23 23 H 1.48499 * 109.47255 * 60.00727 * 22 20 18 24 24 H 1.48500 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47396 * 300.00354 * 22 20 18 26 26 C 1.39204 * 120.41467 * 179.71842 * 13 12 11 27 27 C 1.39489 * 120.04701 * 0.29805 * 12 11 10 28 28 C 1.37669 * 120.02760 * 359.44532 * 27 12 11 29 29 H 1.09003 * 109.46524 * 296.04304 * 1 2 3 30 30 H 1.08996 * 109.47014 * 56.03879 * 1 2 3 31 31 H 1.08990 * 109.47206 * 176.04544 * 1 2 3 32 32 H 1.08993 * 109.47175 * 183.95355 * 3 2 1 33 33 H 1.08997 * 109.47229 * 303.96000 * 3 2 1 34 34 H 1.09002 * 109.47008 * 63.95629 * 3 2 1 35 35 H 1.09002 * 109.46956 * 49.99760 * 4 2 1 36 36 H 1.09000 * 109.47487 * 289.99546 * 4 2 1 37 37 H 1.09002 * 109.47058 * 60.00258 * 5 4 2 38 38 H 1.08994 * 109.47171 * 299.99906 * 5 4 2 39 39 H 0.96999 * 120.00140 * 359.97438 * 6 5 4 40 40 H 1.08008 * 120.01385 * 359.94839 * 10 9 7 41 41 H 1.08002 * 119.99013 * 179.97438 * 11 10 9 42 42 H 1.07998 * 119.42807 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.66147 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00085 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.95994 * 0.02562 * 26 13 12 46 46 H 1.08001 * 119.98472 * 179.72598 * 27 12 11 47 47 H 1.08002 * 120.01574 * 180.27611 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9702 6 7 4.0293 -1.7199 2.1044 7 6 5.3440 -2.0091 2.1715 8 8 6.0942 -1.6360 1.2907 9 6 5.8732 -2.7804 3.3149 10 6 7.2357 -3.0809 3.3847 11 6 7.7278 -3.7993 4.4510 12 6 6.8667 -4.2268 5.4617 13 6 7.3982 -5.0002 6.6101 14 6 8.7597 -5.3058 6.6880 15 7 9.2478 -5.9923 7.7030 16 6 8.4878 -6.4224 8.6865 17 6 7.1042 -6.1625 8.6917 18 6 6.2884 -6.6263 9.7499 19 1 6.7244 -6.8378 10.7151 20 6 4.9163 -6.8112 9.5462 21 7 4.4403 -6.8899 8.3302 22 14 3.7646 -6.9459 11.0107 23 1 3.8429 -5.7021 11.8181 24 1 2.3727 -7.1375 10.5297 25 1 4.1624 -8.1057 11.8483 26 6 6.5480 -5.4262 7.6267 27 6 5.5051 -3.9322 5.3901 28 6 5.0116 -3.2094 4.3275 29 1 -0.3632 0.4512 0.9234 30 1 -0.3633 0.5741 -0.8523 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0828 1.3431 -0.0709 33 1 1.5899 1.9163 -0.8523 34 1 1.7045 1.8723 0.9233 35 1 1.5089 -1.7407 1.1756 36 1 1.7976 -0.2248 2.0628 37 1 3.9910 0.0192 0.9322 38 1 3.7023 -1.4967 0.0451 39 1 3.4308 -2.0173 2.8074 40 1 7.9027 -2.7501 2.6023 41 1 8.7811 -4.0321 4.5050 42 1 9.4237 -4.9741 5.9034 43 1 8.9297 -6.9809 9.4985 44 1 3.4893 -7.0184 8.1890 45 1 5.4917 -5.2030 7.5977 46 1 4.8386 -4.2675 6.1710 47 1 3.9581 -2.9776 4.2746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241770375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:02 Heat of formation + Delta-G solvation = 15.718704 kcal Electronic energy + Delta-G solvation = -27390.356215 eV Core-core repulsion = 23537.270058 eV Total energy + Delta-G solvation = -3853.086157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.16034 -38.94801 -38.08558 -37.49330 -34.82363 -34.24209 -32.62551 -31.06696 -30.34984 -29.89911 -28.37756 -28.02183 -25.81533 -24.87271 -23.43939 -22.89453 -21.61539 -21.13328 -20.98257 -19.98504 -18.03698 -17.46100 -16.57556 -16.20733 -15.95309 -15.58485 -15.38004 -15.24338 -15.06448 -14.92753 -14.65699 -14.20291 -13.79841 -13.74874 -13.48828 -13.16242 -13.07077 -12.85550 -12.80517 -12.34449 -12.18276 -12.13319 -11.99805 -11.87634 -11.69513 -11.50918 -11.46871 -11.38793 -11.25892 -10.78260 -10.55667 -10.01574 -9.91361 -9.51614 -9.40005 -9.18492 -8.86758 -8.76034 -8.25693 -8.02129 -7.39916 -6.98885 -4.63762 0.86822 1.66686 2.41860 2.70549 2.87403 2.92884 2.95276 3.08227 3.22172 3.69909 3.73978 4.15318 4.41477 4.50462 4.61623 4.74976 4.80228 4.92071 4.97141 5.04123 5.14853 5.16924 5.18921 5.30165 5.43679 5.45889 5.51753 5.58664 5.58769 5.66012 5.72867 5.91225 6.00848 6.20427 6.21646 6.38213 6.47099 6.50245 6.52499 6.58449 6.58902 6.64777 6.91169 6.97722 7.07896 7.17648 7.38430 7.51747 7.68522 7.75580 8.17328 8.25330 8.51341 8.54194 9.47077 9.91089 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.002285 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.223543 B =12249.623618 C =14389.537085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.017 3.983 4 C 0.042 3.958 5 C 0.123 3.877 6 N -0.732 5.732 7 C 0.567 3.433 8 O -0.543 6.543 9 C -0.164 4.164 10 C -0.055 4.055 11 C -0.132 4.132 12 C 0.027 3.973 13 C -0.105 4.105 14 C -0.019 4.019 15 N -0.469 5.469 16 C -0.013 4.013 17 C 0.059 3.941 18 C -0.448 4.448 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.790 5.790 22 Si 0.913 3.087 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.110 4.110 27 C -0.124 4.124 28 C -0.082 4.082 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.028 0.972 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.285 0.715 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.192 11.392 -10.950 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.131 4.131 4 C -0.087 4.087 5 C -0.001 4.001 6 N -0.385 5.385 7 C 0.356 3.644 8 O -0.421 6.421 9 C -0.167 4.167 10 C -0.074 4.074 11 C -0.150 4.150 12 C 0.026 3.974 13 C -0.107 4.107 14 C -0.177 4.177 15 N -0.176 5.176 16 C -0.174 4.174 17 C 0.055 3.945 18 C -0.477 4.477 19 H 0.103 0.897 20 C -0.144 4.144 21 N -0.415 5.415 22 Si 0.737 3.263 23 H -0.186 1.186 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.101 4.101 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.235 0.765 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.146 0.854 44 H 0.096 0.904 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.857 11.219 -12.160 18.766 hybrid contribution -2.253 0.264 1.682 2.824 sum -11.110 11.483 -10.478 19.107 Atomic orbital electron populations 1.22399 0.86650 1.02580 1.00723 1.61853 1.08259 1.14235 1.42454 1.22513 1.01428 0.88434 1.00716 1.22297 0.94980 0.99225 0.92152 1.21250 0.92404 0.96675 0.89763 1.45815 1.09042 1.57716 1.25975 1.18330 0.81442 0.78862 0.85766 1.90748 1.57466 1.53713 1.40181 1.19700 0.95105 1.05354 0.96539 1.21083 0.93795 0.95187 0.97315 1.21250 1.00372 0.99459 0.93895 1.19239 0.92776 0.92481 0.92950 1.19488 0.95257 1.01027 0.94962 1.21839 0.91778 1.05546 0.98516 1.66960 1.40357 1.08758 1.01541 1.22600 0.91511 1.05092 0.98149 1.18481 0.92831 0.90178 0.93051 1.19549 0.91976 1.38045 0.98141 0.89717 1.25980 0.99257 0.92115 0.97074 1.69764 1.15958 1.33669 1.22079 0.86268 0.78424 0.80187 0.81418 1.18623 1.20160 1.18724 1.21890 0.99628 0.97788 0.94241 1.21304 0.95434 0.98849 0.98623 1.21084 0.98450 0.97034 0.93517 0.95467 0.91060 0.91100 0.90747 0.91112 0.95390 0.89885 0.93967 0.91399 0.90475 0.76469 0.85068 0.85021 0.85824 0.85419 0.90374 0.84800 0.84670 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.07 0.57 0.72 16 2 N -0.54 -4.15 5.02 -251.27 -1.26 -5.41 16 3 C 0.02 0.12 9.32 60.06 0.56 0.68 16 4 C 0.04 0.31 5.07 -3.82 -0.02 0.29 16 5 C 0.12 1.19 5.60 -4.04 -0.02 1.17 16 6 N -0.73 -7.84 5.51 -61.29 -0.34 -8.18 16 7 C 0.57 8.16 7.77 -12.38 -0.10 8.06 16 8 O -0.54 -9.47 16.33 5.30 0.09 -9.39 16 9 C -0.16 -2.42 5.88 -104.93 -0.62 -3.04 16 10 C -0.05 -0.85 9.58 -39.24 -0.38 -1.22 16 11 C -0.13 -2.17 9.42 -39.32 -0.37 -2.54 16 12 C 0.03 0.50 5.88 -104.82 -0.62 -0.12 16 13 C -0.11 -2.30 5.88 -104.83 -0.62 -2.92 16 14 C -0.02 -0.41 10.60 -16.95 -0.18 -0.59 16 15 N -0.47 -11.20 10.32 -12.27 -0.13 -11.32 16 16 C -0.01 -0.31 10.96 -16.72 -0.18 -0.49 16 17 C 0.06 1.47 5.59 -106.71 -0.60 0.87 16 18 C -0.45 -10.86 9.08 -37.72 -0.34 -11.20 16 19 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 20 C 0.07 1.70 5.18 -17.34 -0.09 1.61 16 21 N -0.79 -18.41 10.92 55.55 0.61 -17.81 16 22 Si 0.91 17.02 29.59 -169.99 -5.03 11.99 16 23 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 24 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 26 C -0.11 -2.62 8.16 -38.21 -0.31 -2.93 16 27 C -0.12 -2.08 9.42 -39.32 -0.37 -2.45 16 28 C -0.08 -1.14 9.52 -39.24 -0.37 -1.51 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.53 6.47 -51.93 -0.34 0.19 16 33 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 36 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 37 H 0.07 0.70 6.55 -51.93 -0.34 0.36 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.40 3.35 6.49 -40.82 -0.26 3.09 16 40 H 0.13 1.91 7.64 -52.48 -0.40 1.51 16 41 H 0.13 1.99 6.20 -52.49 -0.33 1.66 16 42 H 0.12 2.39 6.19 -52.49 -0.32 2.07 16 43 H 0.13 2.84 8.06 -52.48 -0.42 2.42 16 44 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 45 H 0.13 3.15 4.43 -52.49 -0.23 2.92 16 46 H 0.14 2.32 6.24 -52.49 -0.33 1.99 16 47 H 0.12 1.22 6.39 -52.49 -0.34 0.89 16 LS Contribution 387.32 15.07 5.84 5.84 Total: -1.00 -28.82 387.32 -10.51 -39.33 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.23 Total: 10.57 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -4.05 Total: -15.62 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -1.12 Total: -42.72 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.82 -10.51 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241770375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.049 kcal (2) G-P(sol) polarization free energy of solvation -28.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds