Wall clock time and date at job start Sat Apr 11 2020 05:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46899 * 111.00350 * 2 1 4 4 C 1.46898 * 110.99945 * 123.95559 * 2 1 3 5 5 C 1.53002 * 109.47096 * 169.99564 * 4 2 1 6 6 N 1.46502 * 109.47007 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99869 * 180.02562 * 6 5 4 8 8 O 1.21569 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.47724 * 119.99966 * 180.02562 * 7 6 5 10 10 C 1.39701 * 120.02628 * 179.97438 * 9 7 6 11 11 C 1.37667 * 119.97559 * 179.97438 * 10 9 7 12 12 C 1.39494 * 120.02685 * 359.97438 * 11 10 9 13 13 C 1.48307 * 119.97513 * 180.02562 * 12 11 10 14 14 C 1.39762 * 120.41657 * 359.97438 * 13 12 11 15 15 N 1.31898 * 121.13986 * 179.97438 * 14 13 12 16 16 C 1.31526 * 122.13157 * 0.02562 * 15 14 13 17 17 C 1.40779 * 120.67961 * 0.02620 * 16 15 14 18 18 C 1.41443 * 120.59813 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00363 * 23.39604 * 18 17 16 20 20 C 1.39943 * 119.99358 * 203.39094 * 18 17 16 21 21 N 1.30821 * 120.00214 * 17.37042 * 20 18 17 22 22 Si 1.86798 * 119.99651 * 197.36025 * 20 18 17 23 23 H 1.48499 * 109.47255 * 60.00727 * 22 20 18 24 24 H 1.48500 * 109.46861 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47396 * 300.00354 * 22 20 18 26 26 C 1.39204 * 120.41467 * 179.71842 * 13 12 11 27 27 C 1.39489 * 120.04701 * 0.29805 * 12 11 10 28 28 C 1.37669 * 120.02760 * 359.44532 * 27 12 11 29 29 H 1.09003 * 109.46524 * 296.04304 * 1 2 3 30 30 H 1.08996 * 109.47014 * 56.03879 * 1 2 3 31 31 H 1.08990 * 109.47206 * 176.04544 * 1 2 3 32 32 H 1.08993 * 109.47175 * 183.95355 * 3 2 1 33 33 H 1.08997 * 109.47229 * 303.96000 * 3 2 1 34 34 H 1.09002 * 109.47008 * 63.95629 * 3 2 1 35 35 H 1.09002 * 109.46956 * 49.99760 * 4 2 1 36 36 H 1.09000 * 109.47487 * 289.99546 * 4 2 1 37 37 H 1.09002 * 109.47058 * 60.00258 * 5 4 2 38 38 H 1.08994 * 109.47171 * 299.99906 * 5 4 2 39 39 H 0.96999 * 120.00140 * 359.97438 * 6 5 4 40 40 H 1.08008 * 120.01385 * 359.94839 * 10 9 7 41 41 H 1.08002 * 119.99013 * 179.97438 * 11 10 9 42 42 H 1.07998 * 119.42807 * 359.97438 * 14 13 12 43 43 H 1.08004 * 119.66147 * 180.02562 * 16 15 14 44 44 H 0.97000 * 120.00085 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.95994 * 0.02562 * 26 13 12 46 46 H 1.08001 * 119.98472 * 179.72598 * 27 12 11 47 47 H 1.08002 * 120.01574 * 180.27611 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 3.5044 -0.9555 0.9702 6 7 4.0293 -1.7199 2.1044 7 6 5.3440 -2.0091 2.1715 8 8 6.0942 -1.6360 1.2907 9 6 5.8732 -2.7804 3.3149 10 6 7.2357 -3.0809 3.3847 11 6 7.7278 -3.7993 4.4510 12 6 6.8667 -4.2268 5.4617 13 6 7.3982 -5.0002 6.6101 14 6 8.7597 -5.3058 6.6880 15 7 9.2478 -5.9923 7.7030 16 6 8.4878 -6.4224 8.6865 17 6 7.1042 -6.1625 8.6917 18 6 6.2884 -6.6263 9.7499 19 1 6.7244 -6.8378 10.7151 20 6 4.9163 -6.8112 9.5462 21 7 4.4403 -6.8899 8.3302 22 14 3.7646 -6.9459 11.0107 23 1 3.8429 -5.7021 11.8181 24 1 2.3727 -7.1375 10.5297 25 1 4.1624 -8.1057 11.8483 26 6 6.5480 -5.4262 7.6267 27 6 5.5051 -3.9322 5.3901 28 6 5.0116 -3.2094 4.3275 29 1 -0.3632 0.4512 0.9234 30 1 -0.3633 0.5741 -0.8523 31 1 -0.3633 -1.0251 -0.0709 32 1 3.0828 1.3431 -0.0709 33 1 1.5899 1.9163 -0.8523 34 1 1.7045 1.8723 0.9233 35 1 1.5089 -1.7407 1.1756 36 1 1.7976 -0.2248 2.0628 37 1 3.9910 0.0192 0.9322 38 1 3.7023 -1.4967 0.0451 39 1 3.4308 -2.0173 2.8074 40 1 7.9027 -2.7501 2.6023 41 1 8.7811 -4.0321 4.5050 42 1 9.4237 -4.9741 5.9034 43 1 8.9297 -6.9809 9.4985 44 1 3.4893 -7.0184 8.1890 45 1 5.4917 -5.2030 7.5977 46 1 4.8386 -4.2675 6.1710 47 1 3.9581 -2.9776 4.2746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241770375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:00 Heat of formation + Delta-G solvation = -1.613017 kcal Electronic energy + Delta-G solvation = -27391.107775 eV Core-core repulsion = 23537.270058 eV Total energy + Delta-G solvation = -3853.837717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.35016 -40.44712 -39.15423 -38.51283 -36.00074 -35.79001 -34.08785 -32.51813 -31.91330 -30.96263 -29.60662 -28.51003 -27.58121 -25.85578 -24.55622 -24.38966 -22.66929 -22.45753 -22.20293 -21.26429 -19.35912 -18.97146 -17.59771 -17.53498 -17.15292 -16.91748 -16.71679 -16.29781 -16.08863 -15.93707 -15.78413 -15.18217 -15.12397 -14.86812 -14.67508 -14.55738 -14.43840 -14.30601 -13.67748 -13.52253 -13.31852 -13.27891 -13.13993 -12.97381 -12.90503 -12.74950 -12.64704 -12.48862 -12.27405 -12.16521 -11.95217 -11.67221 -11.20456 -11.13175 -10.88651 -10.20268 -10.05530 -9.99611 -9.80717 -9.39092 -8.99362 -8.69617 -6.46917 -0.48809 0.42007 0.81718 1.02878 1.40925 1.50494 1.54873 1.90371 1.97344 2.18562 2.66213 2.95675 3.09296 3.61167 3.71331 3.75442 3.84003 3.86989 3.97307 4.01329 4.16512 4.26714 4.39882 4.40333 4.42775 4.49396 4.53467 4.63877 4.68853 4.74878 4.81841 4.84355 4.90793 4.91606 5.03246 5.04502 5.12057 5.13596 5.19833 5.26819 5.32147 5.38641 5.50703 5.81810 5.85819 5.89506 5.97343 6.00786 6.01103 6.42823 6.45413 6.71933 6.74450 7.10968 7.65712 8.22184 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.002285 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.223543 B =12249.623618 C =14389.537085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.560 5.560 3 C 0.017 3.983 4 C 0.049 3.951 5 C 0.126 3.874 6 N -0.713 5.713 7 C 0.566 3.434 8 O -0.576 6.576 9 C -0.157 4.157 10 C -0.059 4.059 11 C -0.127 4.127 12 C -0.004 4.004 13 C -0.099 4.099 14 C -0.032 4.032 15 N -0.481 5.481 16 C -0.039 4.039 17 C 0.035 3.965 18 C -0.478 4.478 19 H 0.086 0.914 20 C 0.039 3.961 21 N -0.813 5.813 22 Si 0.985 3.015 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.066 4.066 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.414 0.586 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.135 0.865 44 H 0.295 0.705 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 12.444 -11.677 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.285 5.285 3 C -0.131 4.131 4 C -0.079 4.079 5 C 0.002 3.998 6 N -0.366 5.366 7 C 0.355 3.645 8 O -0.457 6.457 9 C -0.160 4.160 10 C -0.078 4.078 11 C -0.145 4.145 12 C -0.005 4.005 13 C -0.101 4.101 14 C -0.190 4.190 15 N -0.188 5.188 16 C -0.199 4.199 17 C 0.031 3.969 18 C -0.507 4.507 19 H 0.104 0.896 20 C -0.178 4.178 21 N -0.438 5.438 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.189 1.189 25 H -0.185 1.185 26 C -0.157 4.157 27 C -0.147 4.147 28 C -0.085 4.085 29 H 0.050 0.950 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.252 0.748 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.152 0.848 44 H 0.106 0.894 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.299 12.270 -12.884 21.076 hybrid contribution -1.539 0.026 1.716 2.305 sum -12.838 12.296 -11.168 20.994 Atomic orbital electron populations 1.22434 0.85528 1.03068 1.01278 1.61850 1.09349 1.14638 1.42617 1.22518 1.00960 0.88295 1.01319 1.22219 0.93107 0.99973 0.92609 1.21274 0.94039 0.95835 0.88660 1.45692 1.07988 1.56536 1.26423 1.18266 0.82356 0.78721 0.85145 1.90742 1.58582 1.55153 1.41256 1.19904 0.95069 1.04424 0.96650 1.21226 0.94532 0.94929 0.97132 1.21307 1.00650 0.99055 0.93439 1.19195 0.94079 0.94300 0.92944 1.19758 0.94991 1.00027 0.95334 1.22329 0.92635 1.05273 0.98746 1.66959 1.40690 1.09192 1.01950 1.22750 0.91720 1.06474 0.99005 1.18818 0.93407 0.90782 0.93935 1.19817 0.93287 1.39399 0.98204 0.89612 1.26782 1.00040 0.91139 0.99819 1.69797 1.16872 1.33301 1.23786 0.85194 0.76537 0.80038 0.77711 1.18416 1.18884 1.18502 1.21950 0.99884 0.98877 0.95036 1.21327 0.94646 0.99348 0.99379 1.21353 1.00297 0.95124 0.91705 0.95006 0.90402 0.90699 0.91560 0.90275 0.95008 0.88916 0.93026 0.91978 0.91825 0.74817 0.84196 0.84065 0.83218 0.84759 0.89422 0.85018 0.85443 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 127.69 1.22 1.46 16 2 N -0.56 -7.34 5.02 -948.87 -4.76 -12.10 16 3 C 0.02 0.20 9.32 127.69 1.19 1.39 16 4 C 0.05 0.60 5.07 86.30 0.44 1.04 16 5 C 0.13 2.18 5.60 86.38 0.48 2.67 16 6 N -0.71 -13.31 5.51 -466.08 -2.57 -15.88 16 7 C 0.57 15.08 7.77 86.75 0.67 15.75 16 8 O -0.58 -19.35 16.33 -3.93 -0.06 -19.41 16 9 C -0.16 -4.30 5.88 -20.06 -0.12 -4.41 16 10 C -0.06 -1.74 9.58 22.49 0.22 -1.52 16 11 C -0.13 -4.04 9.42 22.44 0.21 -3.83 16 12 C 0.00 -0.15 5.88 -19.99 -0.12 -0.27 16 13 C -0.10 -4.41 5.88 -20.00 -0.12 -4.53 16 14 C -0.03 -1.42 10.60 85.05 0.90 -0.52 16 15 N -0.48 -23.51 10.32 -192.73 -1.99 -25.50 16 16 C -0.04 -1.98 10.96 85.36 0.94 -1.04 16 17 C 0.03 1.80 5.59 -21.22 -0.12 1.68 16 18 C -0.48 -23.85 9.08 23.47 0.21 -23.64 16 19 H 0.09 4.08 7.90 -2.91 -0.02 4.06 16 20 C 0.04 1.79 5.18 85.26 0.44 2.23 16 21 N -0.81 -38.05 10.92 21.83 0.24 -37.81 16 22 Si 0.98 34.42 29.59 68.60 2.03 36.45 16 23 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 24 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 25 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 26 C -0.13 -6.47 8.16 23.16 0.19 -6.28 16 27 C -0.13 -4.19 9.42 22.44 0.21 -3.98 16 28 C -0.07 -1.67 9.52 22.49 0.21 -1.45 16 29 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.63 8.12 -2.39 -0.02 0.61 16 31 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 32 H 0.07 0.87 6.47 -2.39 -0.02 0.85 16 33 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 34 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.09 0.97 8.06 -2.39 -0.02 0.95 16 36 H 0.05 0.56 8.12 -2.39 -0.02 0.54 16 37 H 0.06 1.19 6.55 -2.39 -0.02 1.17 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.41 5.36 6.49 -92.71 -0.60 4.76 16 40 H 0.14 3.87 7.64 -2.91 -0.02 3.84 16 41 H 0.14 4.11 6.20 -2.91 -0.02 4.10 16 42 H 0.15 5.73 6.19 -2.91 -0.02 5.71 16 43 H 0.13 6.28 8.06 -2.91 -0.02 6.26 16 44 H 0.29 12.29 8.30 -92.71 -0.77 11.52 16 45 H 0.13 6.38 4.43 -2.91 -0.01 6.36 16 46 H 0.13 4.33 6.24 -2.91 -0.02 4.31 16 47 H 0.16 2.61 6.39 -2.91 -0.02 2.59 16 Total: -1.00 -63.42 387.32 0.37 -63.06 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.41 Total: 36.44 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 7.07 Total: -25.25 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -9.08 Total: -91.29 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Total: -63.42 0.37 -63.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241770375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.444 kcal (2) G-P(sol) polarization free energy of solvation -63.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds