Wall clock time and date at job start Sat Apr 11 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99568 * 2 1 4 4 C 1.46900 * 111.00149 * 123.95322 * 2 1 3 5 5 C 1.52999 * 109.46823 * 66.04675 * 4 2 1 6 6 N 1.46501 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00208 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99804 * 359.71995 * 7 6 5 9 9 C 1.47708 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.39775 * 119.99635 * 359.45170 * 9 7 6 11 11 C 1.37095 * 120.00387 * 179.71817 * 10 9 7 12 12 C 1.39815 * 119.99663 * 0.55317 * 11 10 9 13 13 C 1.47737 * 120.00602 * 179.69762 * 12 11 10 14 14 C 1.39354 * 120.78399 * 129.74386 * 13 12 11 15 15 N 1.31665 * 120.65675 * 179.68203 * 14 13 12 16 16 C 1.32209 * 122.50816 * 0.63562 * 15 14 13 17 17 C 1.36521 * 121.51501 * 359.65349 * 16 15 14 18 18 C 1.41112 * 119.10842 * 0.02562 * 17 16 15 19 19 C 1.40908 * 121.11236 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00493 * 154.62206 * 19 18 17 21 21 C 1.40241 * 119.99687 * 334.62133 * 19 18 17 22 22 N 1.30648 * 120.00619 * 344.36712 * 21 19 18 23 23 Si 1.86804 * 120.00046 * 164.36813 * 21 19 18 24 24 H 1.48498 * 109.47146 * 89.99700 * 23 21 19 25 25 H 1.48497 * 109.47310 * 210.00036 * 23 21 19 26 26 H 1.48505 * 109.47131 * 329.99976 * 23 21 19 27 27 C 1.39816 * 119.99055 * 359.71996 * 12 11 10 28 28 C 1.37102 * 119.99138 * 359.97438 * 27 12 11 29 29 H 1.09005 * 109.47164 * 296.04194 * 1 2 3 30 30 H 1.08999 * 109.47216 * 56.04354 * 1 2 3 31 31 H 1.08995 * 109.47453 * 176.04569 * 1 2 3 32 32 H 1.09003 * 109.46526 * 183.95383 * 3 2 1 33 33 H 1.08997 * 109.47217 * 303.95034 * 3 2 1 34 34 H 1.08995 * 109.47028 * 63.95977 * 3 2 1 35 35 H 1.09000 * 109.47267 * 306.04733 * 4 2 1 36 36 H 1.08995 * 109.46881 * 186.04131 * 4 2 1 37 37 H 1.09000 * 109.47152 * 59.99987 * 5 4 2 38 38 H 1.09004 * 109.47145 * 300.00018 * 5 4 2 39 39 H 0.96996 * 119.99697 * 359.97438 * 6 5 4 40 40 H 1.08004 * 119.99538 * 359.97438 * 10 9 7 41 41 H 1.08005 * 120.00253 * 180.29504 * 11 10 9 42 42 H 1.07999 * 119.66992 * 359.97438 * 14 13 12 43 43 H 1.07993 * 119.24441 * 179.67160 * 16 15 14 44 44 H 1.08000 * 120.44207 * 180.02562 * 17 16 15 45 45 H 0.96992 * 120.00822 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.00459 * 180.02562 * 27 12 11 47 47 H 1.08007 * 119.99294 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1560 -3.0064 2.1050 7 6 1.9555 -4.3375 2.1718 8 8 1.3349 -4.9035 1.2928 9 6 2.4848 -5.1077 3.3156 10 6 3.2035 -4.4578 4.3230 11 6 3.6899 -5.1715 5.3877 12 6 3.4769 -6.5515 5.4599 13 6 4.0067 -7.3219 6.6038 14 6 3.1857 -8.1907 7.3201 15 7 3.6621 -8.8807 8.3352 16 6 4.9187 -8.7823 8.7340 17 6 5.8045 -7.9559 8.1045 18 6 5.3656 -7.1900 7.0036 19 6 6.2438 -6.3231 6.3233 20 1 6.0576 -6.0669 5.2909 21 6 7.3598 -5.7931 6.9871 22 7 7.4293 -5.8433 8.2907 23 14 8.7469 -5.0151 6.0072 24 1 8.4753 -3.5661 5.8295 25 1 10.0283 -5.1929 6.7363 26 1 8.8398 -5.6681 4.6766 27 6 2.7629 -7.2023 4.4493 28 6 2.2713 -6.4871 3.3879 29 1 -0.3634 0.4512 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0251 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5612 -0.3872 2.0628 36 1 3.0797 -0.6611 1.1755 37 1 2.0658 -2.6213 0.0451 38 1 0.5472 -2.3475 0.9322 39 1 2.6482 -2.5543 2.8080 40 1 3.3721 -3.3926 4.2647 41 1 4.2411 -4.6686 6.1685 42 1 2.1495 -8.3025 7.0368 43 1 5.2523 -9.3694 9.5768 44 1 6.8274 -7.8893 8.4446 45 1 8.2009 -5.4764 8.7498 46 1 2.5979 -8.2682 4.5051 47 1 1.7200 -6.9899 2.6070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241770879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:07 Heat of formation + Delta-G solvation = 14.693030 kcal Electronic energy + Delta-G solvation = -27852.015365 eV Core-core repulsion = 23998.884731 eV Total energy + Delta-G solvation = -3853.130634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -39.99251 -38.85189 -38.02304 -37.35715 -34.70215 -34.36987 -32.34269 -30.87204 -30.20408 -29.75609 -28.31922 -27.97255 -26.23394 -24.69396 -23.32771 -22.22209 -21.55589 -21.28334 -20.97009 -19.85404 -17.90107 -17.60104 -16.49712 -16.13220 -15.84733 -15.51200 -15.24870 -14.98057 -14.95070 -14.67259 -14.52494 -14.19652 -13.89856 -13.67762 -13.35493 -13.00427 -12.85930 -12.76374 -12.64704 -12.40716 -12.27625 -12.13191 -11.97543 -11.79445 -11.70864 -11.57986 -11.41891 -11.33515 -11.04607 -10.60857 -10.47281 -9.98794 -9.75345 -9.62044 -9.13868 -8.81383 -8.69859 -8.52892 -8.13662 -8.00250 -7.49030 -7.04575 -4.78001 1.18665 1.94093 2.52006 2.66882 2.90422 2.94892 2.98996 3.09993 3.26450 3.69058 3.78019 4.36957 4.45733 4.49345 4.68775 4.80490 4.95364 5.00461 5.10394 5.18944 5.20622 5.23620 5.39159 5.47806 5.49302 5.52694 5.59795 5.65819 5.75021 5.77539 5.88278 6.02471 6.15861 6.31426 6.41077 6.52726 6.55808 6.58811 6.67165 6.72121 6.76315 6.86287 6.91583 7.16225 7.22996 7.35934 7.42141 7.53121 7.68557 7.90955 8.25352 8.32332 8.50376 8.54322 9.47547 9.82341 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.002646 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.112119 B =10579.847751 C =12354.336183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.042 3.958 5 C 0.124 3.876 6 N -0.733 5.733 7 C 0.568 3.432 8 O -0.547 6.547 9 C -0.174 4.174 10 C -0.087 4.087 11 C -0.111 4.111 12 C 0.061 3.939 13 C -0.249 4.249 14 C 0.136 3.864 15 N -0.577 5.577 16 C 0.083 3.917 17 C -0.207 4.207 18 C 0.147 3.853 19 C -0.439 4.439 20 H 0.088 0.912 21 C 0.078 3.922 22 N -0.775 5.775 23 Si 0.909 3.091 24 H -0.266 1.266 25 H -0.273 1.273 26 H -0.257 1.257 27 C -0.142 4.142 28 C -0.055 4.055 29 H 0.027 0.973 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.400 0.600 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.287 0.713 46 H 0.123 0.877 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 12.270 -9.821 16.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.000 4.000 6 N -0.387 5.387 7 C 0.358 3.642 8 O -0.426 6.426 9 C -0.177 4.177 10 C -0.106 4.106 11 C -0.129 4.129 12 C 0.060 3.940 13 C -0.254 4.254 14 C -0.023 4.023 15 N -0.292 5.292 16 C -0.064 4.064 17 C -0.229 4.229 18 C 0.140 3.860 19 C -0.468 4.468 20 H 0.106 0.894 21 C -0.144 4.144 22 N -0.398 5.398 23 Si 0.733 3.267 24 H -0.191 1.191 25 H -0.198 1.198 26 H -0.181 1.181 27 C -0.161 4.161 28 C -0.074 4.074 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.144 0.856 45 H 0.098 0.902 46 H 0.141 0.859 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.155 11.130 -10.189 16.296 hybrid contribution 1.349 1.723 0.381 2.221 sum -4.806 12.854 -9.807 16.867 Atomic orbital electron populations 1.22511 0.87015 1.02881 1.00664 1.61856 1.08366 1.14060 1.42531 1.22398 1.00970 0.88299 1.00680 1.22300 1.01021 0.93244 0.92085 1.21225 0.99398 0.89562 0.89853 1.45819 1.58816 1.08166 1.25882 1.18385 0.78814 0.81270 0.85774 1.90732 1.41496 1.69877 1.40475 1.19623 1.06552 0.94709 0.96827 1.20949 0.96920 0.98831 0.93903 1.21242 0.99581 0.93874 0.98252 1.18960 0.90602 0.92427 0.92037 1.19543 0.95084 1.07931 1.02865 1.22126 0.97575 0.91220 0.91365 1.67335 1.16317 1.27602 1.17898 1.21761 0.89695 0.96921 0.97989 1.21926 1.00863 0.99529 1.00605 1.17721 0.89559 0.88921 0.89840 1.19649 1.05277 1.22670 0.99244 0.89394 1.26058 0.98811 0.94695 0.94817 1.69711 1.28671 1.32694 1.08761 0.86267 0.79539 0.79939 0.80999 1.19063 1.19781 1.18050 1.21181 1.00787 0.99930 0.94167 1.20886 0.96852 0.92322 0.97343 0.95409 0.91157 0.90736 0.91119 0.91099 0.95485 0.93977 0.89902 0.90586 0.91503 0.76482 0.86789 0.84788 0.85933 0.86319 0.85594 0.90179 0.85876 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.54 -4.49 5.02 -251.26 -1.26 -5.75 16 3 C 0.02 0.16 9.57 60.07 0.57 0.73 16 4 C 0.04 0.34 5.07 -3.82 -0.02 0.33 16 5 C 0.12 1.31 5.60 -4.04 -0.02 1.28 16 6 N -0.73 -8.66 5.50 -61.29 -0.34 -9.00 16 7 C 0.57 8.85 7.77 -12.39 -0.10 8.75 16 8 O -0.55 -10.16 16.33 5.30 0.09 -10.07 16 9 C -0.17 -2.80 5.88 -104.88 -0.62 -3.42 16 10 C -0.09 -1.34 9.50 -39.42 -0.37 -1.71 16 11 C -0.11 -2.02 8.02 -39.41 -0.32 -2.34 16 12 C 0.06 1.20 5.00 -104.84 -0.52 0.67 16 13 C -0.25 -5.56 5.53 -104.05 -0.58 -6.13 16 14 C 0.14 2.99 10.71 -17.21 -0.18 2.81 16 15 N -0.58 -13.41 10.32 -13.35 -0.14 -13.55 16 16 C 0.08 1.91 11.09 -18.01 -0.20 1.71 16 17 C -0.21 -4.98 8.72 -39.11 -0.34 -5.32 16 18 C 0.15 3.56 5.59 -106.25 -0.59 2.97 16 19 C -0.44 -10.25 7.29 -37.82 -0.28 -10.53 16 20 H 0.09 2.02 6.70 -52.49 -0.35 1.67 16 21 C 0.08 1.73 5.21 -17.30 -0.09 1.64 16 22 N -0.77 -17.80 10.95 55.56 0.61 -17.19 16 23 Si 0.91 16.78 29.59 -169.99 -5.03 11.75 16 24 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 25 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 26 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 27 C -0.14 -2.51 9.51 -39.40 -0.37 -2.89 16 28 C -0.06 -0.92 9.55 -39.42 -0.38 -1.30 16 29 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 31 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 32 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 33 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 34 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.04 0.33 8.12 -51.93 -0.42 -0.10 16 36 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.74 6.55 -51.93 -0.34 0.40 16 39 H 0.40 3.83 6.49 -40.82 -0.26 3.56 16 40 H 0.11 1.35 6.38 -52.48 -0.34 1.01 16 41 H 0.13 2.56 7.35 -52.48 -0.39 2.18 16 42 H 0.12 2.38 8.05 -52.49 -0.42 1.95 16 43 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 44 H 0.13 3.06 6.27 -52.49 -0.33 2.73 16 45 H 0.29 5.98 8.29 -40.82 -0.34 5.64 16 46 H 0.12 2.03 8.05 -52.49 -0.42 1.61 16 47 H 0.13 2.01 7.64 -52.48 -0.40 1.60 16 LS Contribution 389.24 15.07 5.87 5.87 Total: -1.00 -28.11 389.24 -10.57 -38.68 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -6.52 Total: 11.32 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -3.85 Total: -12.06 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -1.13 Total: -45.48 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -28.11 -10.57 -38.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241770879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.376 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds