Wall clock time and date at job start Sat Apr 11 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99568 * 2 1 4 4 C 1.46900 * 111.00149 * 123.95322 * 2 1 3 5 5 C 1.52999 * 109.46823 * 66.04675 * 4 2 1 6 6 N 1.46501 * 109.47160 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00208 * 180.02562 * 6 5 4 8 8 O 1.21573 * 119.99804 * 359.71995 * 7 6 5 9 9 C 1.47708 * 120.00028 * 179.97438 * 7 6 5 10 10 C 1.39775 * 119.99635 * 359.45170 * 9 7 6 11 11 C 1.37095 * 120.00387 * 179.71817 * 10 9 7 12 12 C 1.39815 * 119.99663 * 0.55317 * 11 10 9 13 13 C 1.47737 * 120.00602 * 179.69762 * 12 11 10 14 14 C 1.39354 * 120.78399 * 129.74386 * 13 12 11 15 15 N 1.31665 * 120.65675 * 179.68203 * 14 13 12 16 16 C 1.32209 * 122.50816 * 0.63562 * 15 14 13 17 17 C 1.36521 * 121.51501 * 359.65349 * 16 15 14 18 18 C 1.41112 * 119.10842 * 0.02562 * 17 16 15 19 19 C 1.40908 * 121.11236 * 179.97438 * 18 17 16 20 20 H 1.07992 * 120.00493 * 154.62206 * 19 18 17 21 21 C 1.40241 * 119.99687 * 334.62133 * 19 18 17 22 22 N 1.30648 * 120.00619 * 344.36712 * 21 19 18 23 23 Si 1.86804 * 120.00046 * 164.36813 * 21 19 18 24 24 H 1.48498 * 109.47146 * 89.99700 * 23 21 19 25 25 H 1.48497 * 109.47310 * 210.00036 * 23 21 19 26 26 H 1.48505 * 109.47131 * 329.99976 * 23 21 19 27 27 C 1.39816 * 119.99055 * 359.71996 * 12 11 10 28 28 C 1.37102 * 119.99138 * 359.97438 * 27 12 11 29 29 H 1.09005 * 109.47164 * 296.04194 * 1 2 3 30 30 H 1.08999 * 109.47216 * 56.04354 * 1 2 3 31 31 H 1.08995 * 109.47453 * 176.04569 * 1 2 3 32 32 H 1.09003 * 109.46526 * 183.95383 * 3 2 1 33 33 H 1.08997 * 109.47217 * 303.95034 * 3 2 1 34 34 H 1.08995 * 109.47028 * 63.95977 * 3 2 1 35 35 H 1.09000 * 109.47267 * 306.04733 * 4 2 1 36 36 H 1.08995 * 109.46881 * 186.04131 * 4 2 1 37 37 H 1.09000 * 109.47152 * 59.99987 * 5 4 2 38 38 H 1.09004 * 109.47145 * 300.00018 * 5 4 2 39 39 H 0.96996 * 119.99697 * 359.97438 * 6 5 4 40 40 H 1.08004 * 119.99538 * 359.97438 * 10 9 7 41 41 H 1.08005 * 120.00253 * 180.29504 * 11 10 9 42 42 H 1.07999 * 119.66992 * 359.97438 * 14 13 12 43 43 H 1.07993 * 119.24441 * 179.67160 * 16 15 14 44 44 H 1.08000 * 120.44207 * 180.02562 * 17 16 15 45 45 H 0.96992 * 120.00822 * 180.02562 * 22 21 19 46 46 H 1.07996 * 120.00459 * 180.02562 * 27 12 11 47 47 H 1.08007 * 119.99294 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.1560 -3.0064 2.1050 7 6 1.9555 -4.3375 2.1718 8 8 1.3349 -4.9035 1.2928 9 6 2.4848 -5.1077 3.3156 10 6 3.2035 -4.4578 4.3230 11 6 3.6899 -5.1715 5.3877 12 6 3.4769 -6.5515 5.4599 13 6 4.0067 -7.3219 6.6038 14 6 3.1857 -8.1907 7.3201 15 7 3.6621 -8.8807 8.3352 16 6 4.9187 -8.7823 8.7340 17 6 5.8045 -7.9559 8.1045 18 6 5.3656 -7.1900 7.0036 19 6 6.2438 -6.3231 6.3233 20 1 6.0576 -6.0669 5.2909 21 6 7.3598 -5.7931 6.9871 22 7 7.4293 -5.8433 8.2907 23 14 8.7469 -5.0151 6.0072 24 1 8.4753 -3.5661 5.8295 25 1 10.0283 -5.1929 6.7363 26 1 8.8398 -5.6681 4.6766 27 6 2.7629 -7.2023 4.4493 28 6 2.2713 -6.4871 3.3879 29 1 -0.3634 0.4512 0.9234 30 1 -0.3633 0.5740 -0.8524 31 1 -0.3634 -1.0251 -0.0709 32 1 3.0827 1.3433 -0.0709 33 1 1.5898 1.9164 -0.8524 34 1 1.7044 1.8723 0.9233 35 1 1.5612 -0.3872 2.0628 36 1 3.0797 -0.6611 1.1755 37 1 2.0658 -2.6213 0.0451 38 1 0.5472 -2.3475 0.9322 39 1 2.6482 -2.5543 2.8080 40 1 3.3721 -3.3926 4.2647 41 1 4.2411 -4.6686 6.1685 42 1 2.1495 -8.3025 7.0368 43 1 5.2523 -9.3694 9.5768 44 1 6.8274 -7.8893 8.4446 45 1 8.2009 -5.4764 8.7498 46 1 2.5979 -8.2682 4.5051 47 1 1.7200 -6.9899 2.6070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241770879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:05 Heat of formation + Delta-G solvation = -1.799291 kcal Electronic energy + Delta-G solvation = -27852.730526 eV Core-core repulsion = 23998.884731 eV Total energy + Delta-G solvation = -3853.845794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.26354 -40.39992 -39.07088 -38.47544 -36.08504 -35.75118 -33.85746 -32.35070 -31.76636 -30.89221 -29.63483 -28.50349 -27.93027 -25.71128 -24.56566 -23.71363 -22.91351 -22.43941 -22.19613 -21.18093 -19.53380 -18.88629 -17.52269 -17.50033 -16.93489 -16.88776 -16.42206 -16.17321 -16.07617 -15.89601 -15.84123 -15.32112 -15.16937 -14.74871 -14.57867 -14.43635 -14.40393 -14.16134 -14.02939 -13.45095 -13.29856 -13.27772 -13.09243 -12.91534 -12.87296 -12.64927 -12.63991 -12.47637 -12.16213 -12.02639 -11.96125 -11.65924 -11.27743 -11.06431 -10.34648 -10.11818 -9.96127 -9.83917 -9.74649 -9.38420 -9.11646 -8.71577 -6.54729 -0.20608 0.58269 0.87131 0.98169 1.39694 1.50418 1.56303 1.92762 2.02595 2.15689 2.74042 3.00007 3.11279 3.67592 3.72574 3.84451 3.97378 3.99680 4.03437 4.10204 4.20936 4.27540 4.40980 4.47764 4.50204 4.54849 4.63558 4.65071 4.69792 4.85094 4.90908 4.94867 4.97380 4.99426 5.03531 5.05510 5.13772 5.25332 5.32275 5.35196 5.42191 5.50635 5.54780 5.79442 5.92447 5.97876 6.01771 6.05796 6.16784 6.47642 6.49497 6.75686 6.78425 7.16349 7.70184 8.17837 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.002646 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.112119 B =10579.847751 C =12354.336183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.560 5.560 3 C 0.025 3.975 4 C 0.050 3.950 5 C 0.126 3.874 6 N -0.715 5.715 7 C 0.568 3.432 8 O -0.580 6.580 9 C -0.169 4.169 10 C -0.071 4.071 11 C -0.119 4.119 12 C 0.035 3.965 13 C -0.250 4.250 14 C 0.125 3.875 15 N -0.592 5.592 16 C 0.078 3.922 17 C -0.229 4.229 18 C 0.119 3.881 19 C -0.454 4.454 20 H 0.086 0.914 21 C 0.044 3.956 22 N -0.802 5.802 23 Si 0.975 3.025 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.262 1.262 27 C -0.139 4.139 28 C -0.059 4.059 29 H 0.032 0.968 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.031 0.969 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.154 0.846 41 H 0.121 0.879 42 H 0.146 0.854 43 H 0.140 0.860 44 H 0.116 0.884 45 H 0.295 0.705 46 H 0.130 0.870 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 14.547 -11.123 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.285 5.285 3 C -0.123 4.123 4 C -0.079 4.079 5 C 0.003 3.997 6 N -0.368 5.368 7 C 0.357 3.643 8 O -0.462 6.462 9 C -0.173 4.173 10 C -0.090 4.090 11 C -0.137 4.137 12 C 0.034 3.966 13 C -0.256 4.256 14 C -0.033 4.033 15 N -0.306 5.306 16 C -0.070 4.070 17 C -0.251 4.251 18 C 0.112 3.888 19 C -0.483 4.483 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.426 5.426 23 Si 0.796 3.204 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.185 1.185 27 C -0.158 4.158 28 C -0.078 4.078 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.171 0.829 41 H 0.139 0.861 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.134 0.866 45 H 0.106 0.894 46 H 0.148 0.852 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.095 13.446 -11.477 18.700 hybrid contribution 1.234 1.073 0.716 1.785 sum -4.860 14.519 -10.762 18.715 Atomic orbital electron populations 1.22518 0.86665 1.02564 1.01331 1.61853 1.08876 1.15131 1.42606 1.22435 1.01206 0.87368 1.01292 1.22214 1.01636 0.91415 0.92611 1.21258 0.98905 0.90928 0.88655 1.45693 1.57707 1.07013 1.26374 1.18300 0.78597 0.82305 0.85124 1.90725 1.43107 1.70801 1.41519 1.19816 1.05780 0.94663 0.96998 1.21196 0.95094 1.00535 0.92134 1.21174 1.00088 0.93487 0.98964 1.18951 0.92349 0.93119 0.92160 1.19818 0.94548 1.07736 1.03455 1.22519 0.98633 0.91056 0.91053 1.67387 1.16368 1.28315 1.18560 1.22067 0.89621 0.96846 0.98431 1.21924 1.00716 1.00796 1.01692 1.18101 0.90737 0.89585 0.90417 1.19758 1.06225 1.23179 0.99180 0.89565 1.26800 1.00417 0.94773 0.95524 1.69749 1.29601 1.33215 1.10070 0.85279 0.76623 0.79423 0.79108 1.17815 1.19164 1.18540 1.21197 1.00278 1.00368 0.93923 1.21013 0.96766 0.92894 0.97123 0.94992 0.90223 0.91603 0.90742 0.90347 0.94993 0.93026 0.88988 0.91951 0.92030 0.74892 0.82880 0.86129 0.83681 0.84255 0.86599 0.89383 0.85216 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 127.69 1.19 1.41 16 2 N -0.56 -7.99 5.02 -948.85 -4.76 -12.75 16 3 C 0.02 0.26 9.57 127.69 1.22 1.48 16 4 C 0.05 0.68 5.07 86.30 0.44 1.12 16 5 C 0.13 2.42 5.60 86.38 0.48 2.90 16 6 N -0.71 -14.98 5.50 -466.10 -2.57 -17.54 16 7 C 0.57 16.55 7.77 86.75 0.67 17.22 16 8 O -0.58 -20.85 16.33 -3.95 -0.06 -20.91 16 9 C -0.17 -5.12 5.88 -20.03 -0.12 -5.23 16 10 C -0.07 -2.01 9.50 22.37 0.21 -1.80 16 11 C -0.12 -4.22 8.02 22.38 0.18 -4.04 16 12 C 0.04 1.38 5.00 -20.00 -0.10 1.28 16 13 C -0.25 -11.36 5.53 -19.50 -0.11 -11.47 16 14 C 0.12 5.54 10.71 84.99 0.91 6.45 16 15 N -0.59 -27.75 10.32 -196.14 -2.02 -29.77 16 16 C 0.08 3.63 11.09 84.23 0.93 4.57 16 17 C -0.23 -11.35 8.72 22.57 0.20 -11.15 16 18 C 0.12 5.91 5.59 -20.92 -0.12 5.79 16 19 C -0.45 -21.50 7.29 23.41 0.17 -21.33 16 20 H 0.09 4.00 6.70 -2.91 -0.02 3.98 16 21 C 0.04 1.96 5.21 85.36 0.44 2.40 16 22 N -0.80 -37.24 10.95 21.88 0.24 -37.01 16 23 Si 0.98 33.74 29.59 68.60 2.03 35.77 16 24 H -0.25 -8.26 7.11 99.48 0.71 -7.56 16 25 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 26 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 27 C -0.14 -4.84 9.51 22.38 0.21 -4.63 16 28 C -0.06 -1.91 9.55 22.37 0.21 -1.69 16 29 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 31 H 0.07 0.94 6.47 -2.39 -0.02 0.92 16 32 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 33 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 34 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 36 H 0.09 1.11 8.06 -2.39 -0.02 1.09 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.28 6.55 -2.39 -0.02 1.26 16 39 H 0.41 6.39 6.49 -92.71 -0.60 5.79 16 40 H 0.15 3.03 6.38 -2.91 -0.02 3.01 16 41 H 0.12 4.61 7.35 -2.91 -0.02 4.59 16 42 H 0.15 5.59 8.05 -2.91 -0.02 5.57 16 43 H 0.14 5.69 8.06 -2.91 -0.02 5.67 16 44 H 0.12 5.86 6.27 -2.91 -0.02 5.84 16 45 H 0.29 12.30 8.29 -92.71 -0.77 11.54 16 46 H 0.13 4.23 8.05 -2.91 -0.02 4.21 16 47 H 0.13 4.10 7.64 -2.91 -0.02 4.08 16 Total: -1.00 -61.10 389.24 0.29 -60.81 By element: Atomic # 1 Polarization: 37.73 SS G_CDS: 0.39 Total: 38.12 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 7.04 Total: -16.72 kcal Atomic # 7 Polarization: -87.96 SS G_CDS: -9.11 Total: -97.07 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Total: -61.10 0.29 -60.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241770879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.009 kcal (2) G-P(sol) polarization free energy of solvation -61.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds