Wall clock time and date at job start Sat Apr 11 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35852 * 116.99854 * 2 1 4 4 C 1.39433 * 119.78883 * 0.02562 * 3 2 1 5 5 C 1.37989 * 120.61098 * 179.76374 * 4 3 2 6 6 C 1.39125 * 120.17132 * 0.46943 * 5 4 3 7 7 C 1.47867 * 120.21636 * 179.79002 * 6 5 4 8 8 C 1.40262 * 120.89706 * 129.69644 * 7 6 5 9 9 C 1.37723 * 119.16011 * 180.02562 * 8 7 6 10 10 N 1.32047 * 121.00722 * 359.97438 * 9 8 7 11 11 C 1.32464 * 121.97722 * 359.97438 * 10 9 8 12 12 N 1.39047 * 119.63528 * 180.02562 * 11 10 9 13 13 C 1.46964 * 111.00099 * 236.19993 * 12 11 10 14 14 C 1.53045 * 109.36396 * 183.18796 * 13 12 11 15 15 N 1.46953 * 109.36732 * 301.60363 * 14 13 12 16 16 C 1.46952 * 110.88240 * 59.32097 * 15 14 13 17 17 C 1.46953 * 111.00143 * 0.02562 * 12 11 10 18 18 C 1.38863 * 120.72987 * 0.02781 * 11 10 9 19 19 C 1.41879 * 119.57145 * 359.51233 * 6 5 4 20 20 C 1.40916 * 120.29891 * 180.27524 * 19 6 5 21 21 H 1.08000 * 119.99903 * 332.97875 * 20 19 6 22 22 C 1.40086 * 119.99990 * 152.98196 * 20 19 6 23 23 N 1.30746 * 120.00238 * 344.47312 * 22 20 19 24 24 Si 1.86808 * 120.00027 * 164.47785 * 22 20 19 25 25 H 1.48495 * 109.47068 * 59.99771 * 24 22 20 26 26 H 1.48498 * 109.46982 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47003 * 299.99681 * 24 22 20 28 28 C 1.37984 * 119.78371 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47303 * 299.99590 * 1 2 3 31 31 H 1.08995 * 109.47295 * 59.99860 * 1 2 3 32 32 H 1.08002 * 119.68936 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.91393 * 180.26153 * 5 4 3 34 34 H 1.08006 * 120.41634 * 0.02562 * 8 7 6 35 35 H 1.08001 * 119.49494 * 180.25783 * 9 8 7 36 36 H 1.09000 * 109.48560 * 303.16185 * 13 12 11 37 37 H 1.08999 * 109.48084 * 63.22561 * 13 12 11 38 38 H 1.09005 * 109.48862 * 181.63458 * 14 13 12 39 39 H 1.09004 * 109.50758 * 61.58276 * 14 13 12 40 40 H 1.00902 * 110.99866 * 295.44868 * 15 14 13 41 41 H 1.08997 * 109.48785 * 180.71457 * 16 15 14 42 42 H 1.09000 * 109.50918 * 60.65629 * 16 15 14 43 43 H 1.09001 * 109.48701 * 296.77600 * 17 12 11 44 44 H 1.08995 * 109.49435 * 56.84210 * 17 12 11 45 45 H 1.07992 * 120.54452 * 179.97438 * 18 11 10 46 46 H 0.96999 * 120.00837 * 180.02562 * 23 22 20 47 47 H 1.08007 * 120.09472 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.2820 2.3770 0.0005 5 6 1.8907 3.6154 0.0054 6 6 3.2786 3.7123 0.0001 7 6 3.9319 5.0389 0.0006 8 6 4.9435 5.3431 0.9234 9 6 5.5273 6.5901 0.8922 10 7 5.1489 7.4965 0.0097 11 6 4.1990 7.2544 -0.8813 12 7 3.8392 8.2445 -1.7889 13 6 2.4009 8.5355 -1.7081 14 6 2.0318 9.5697 -2.7741 15 7 2.8254 10.7888 -2.5658 16 6 4.2636 10.4979 -2.6466 17 6 4.6332 9.4634 -1.5809 18 6 3.5586 6.0228 -0.9189 19 6 4.0630 2.5302 0.0000 20 6 5.4699 2.6105 0.0004 21 1 5.9616 3.4733 -0.4241 22 6 6.2307 1.5713 0.5515 23 7 5.6622 0.6846 1.3262 24 14 8.0575 1.4524 0.1798 25 1 8.7396 2.6848 0.6501 26 1 8.6291 0.2734 0.8786 27 1 8.2561 1.3048 -1.2845 28 6 3.4239 1.2775 -0.0005 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 0.2040 2.3107 0.0014 33 1 1.2882 4.5117 0.0101 34 1 5.2606 4.6087 1.6491 35 1 6.3096 6.8287 1.5975 36 1 1.8346 7.6198 -1.8781 37 1 2.1651 8.9313 -0.7203 38 1 0.9711 9.8087 -2.6971 39 1 2.2421 9.1636 -3.7636 40 1 2.5936 11.2252 -1.6860 41 1 4.8300 11.4135 -2.4765 42 1 4.5000 10.1022 -3.6344 43 1 4.4229 9.8699 -0.5916 44 1 5.6938 9.2243 -1.6582 45 1 2.7844 5.8289 -1.6463 46 1 6.1889 -0.0348 1.7081 47 1 4.0103 0.3705 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242396107.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:48 Heat of formation + Delta-G solvation = 31.635409 kcal Electronic energy + Delta-G solvation = -29070.219297 eV Core-core repulsion = 25217.823340 eV Total energy + Delta-G solvation = -3852.395957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.35862 -38.94063 -38.31514 -36.53573 -34.33967 -33.77087 -32.25616 -31.03120 -30.02555 -29.36968 -28.57057 -26.57132 -25.55742 -25.24827 -23.97946 -22.43415 -21.97644 -21.02049 -20.71203 -19.68802 -17.86904 -17.21172 -16.26864 -16.05218 -15.60361 -15.24920 -15.14715 -14.93244 -14.88624 -14.77511 -14.67022 -14.47565 -14.06185 -13.52067 -13.27156 -13.17417 -12.99320 -12.73276 -12.35034 -12.29089 -11.89257 -11.60915 -11.50969 -11.40115 -11.30420 -11.25949 -11.18199 -11.08817 -10.97956 -10.65240 -10.25149 -10.06435 -9.74153 -9.58734 -9.30593 -8.93039 -8.83084 -8.59995 -7.72345 -7.61173 -7.06443 -6.80380 -4.57476 1.76577 1.78709 2.66579 2.89546 2.99565 3.02435 3.12217 3.65336 3.81267 4.11873 4.20575 4.39619 4.47367 4.74886 4.92914 5.04411 5.10420 5.15951 5.24876 5.40414 5.45704 5.54943 5.58862 5.61995 5.65794 5.75469 5.80568 5.83334 5.83884 5.93929 5.97862 6.00352 6.11230 6.21560 6.33037 6.50405 6.68241 6.74134 6.86014 6.93945 6.98987 7.02521 7.14903 7.22792 7.27584 7.53404 7.58536 7.65098 7.81282 7.89807 8.22068 8.53335 8.59122 8.67096 8.74719 9.98897 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.003623 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.441077 B = 7727.613156 C = 9903.397132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.328 6.328 3 C 0.137 3.863 4 C -0.317 4.317 5 C -0.033 4.033 6 C -0.216 4.216 7 C 0.087 3.913 8 C -0.171 4.171 9 C 0.105 3.895 10 N -0.541 5.541 11 C 0.294 3.706 12 N -0.473 5.473 13 C 0.021 3.979 14 C 0.059 3.941 15 N -0.688 5.688 16 C 0.055 3.945 17 C 0.033 3.967 18 C -0.194 4.194 19 C 0.161 3.839 20 C -0.445 4.445 21 H 0.085 0.915 22 C 0.078 3.922 23 N -0.776 5.776 24 Si 0.907 3.093 25 H -0.262 1.262 26 H -0.276 1.276 27 H -0.261 1.261 28 C -0.192 4.192 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.338 0.662 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.125 0.875 46 H 0.286 0.714 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.570 10.142 -2.637 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.242 6.242 3 C 0.093 3.907 4 C -0.336 4.336 5 C -0.052 4.052 6 C -0.218 4.218 7 C 0.079 3.921 8 C -0.192 4.192 9 C -0.050 4.050 10 N -0.257 5.257 11 C 0.063 3.937 12 N -0.192 5.192 13 C -0.107 4.107 14 C -0.071 4.071 15 N -0.316 5.316 16 C -0.075 4.075 17 C -0.096 4.096 18 C -0.217 4.217 19 C 0.158 3.842 20 C -0.473 4.473 21 H 0.103 0.897 22 C -0.143 4.143 23 N -0.400 5.400 24 Si 0.731 3.269 25 H -0.186 1.186 26 H -0.201 1.201 27 H -0.186 1.186 28 C -0.212 4.212 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.107 0.893 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.143 0.857 46 H 0.097 0.903 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.996 10.647 -3.650 11.944 hybrid contribution 0.211 -1.217 1.574 2.001 sum -3.784 9.430 -2.077 10.371 Atomic orbital electron populations 1.22777 0.80630 1.01994 1.00567 1.86008 1.19624 1.28998 1.89616 1.19021 0.92466 0.82549 0.96635 1.20365 0.97458 0.92396 1.23414 1.20293 0.93068 0.95339 0.96482 1.18421 0.92170 0.90667 1.20531 1.18991 0.91072 0.92045 0.90012 1.22308 0.98247 0.97448 1.01177 1.22229 0.97869 0.89655 0.95235 1.67363 1.16962 1.35751 1.05618 1.19509 0.93270 0.91380 0.89498 1.59341 1.05068 1.08688 1.46080 1.22987 0.87210 1.01491 0.99017 1.22143 0.97729 0.88160 0.99030 1.60760 1.05326 1.25791 1.39687 1.22212 0.88338 0.97446 0.99516 1.22627 0.99558 0.89424 0.97989 1.21622 1.04701 0.93185 1.02170 1.17159 0.92711 0.88754 0.85594 1.19563 0.90944 1.03841 1.32981 0.89696 1.25978 1.01489 0.94123 0.92695 1.69775 1.38846 1.11072 1.20276 0.86365 0.81541 0.78892 0.80152 1.18647 1.20111 1.18584 1.20539 0.89362 0.99075 1.12254 0.89812 0.93595 0.93632 0.88385 0.88927 0.84278 0.83697 0.89268 0.94223 0.89882 0.89718 0.84523 0.90072 0.90039 0.93753 0.89282 0.85707 0.90321 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.80 101.05 0.99 1.55 16 2 O -0.33 -6.96 10.48 -19.28 -0.20 -7.17 16 3 C 0.14 3.20 6.67 -39.23 -0.26 2.94 16 4 C -0.32 -6.75 9.02 -39.23 -0.35 -7.11 16 5 C -0.03 -0.71 9.52 -39.34 -0.37 -1.08 16 6 C -0.22 -4.95 5.56 -104.23 -0.58 -5.53 16 7 C 0.09 1.81 4.92 -104.63 -0.51 1.30 16 8 C -0.17 -3.40 8.11 -39.01 -0.32 -3.71 16 9 C 0.11 1.87 11.16 -17.65 -0.20 1.68 16 10 N -0.54 -9.81 8.68 -12.54 -0.11 -9.92 16 11 C 0.29 5.22 6.40 -155.02 -0.99 4.23 16 12 N -0.47 -7.02 4.73 -173.10 -0.82 -7.84 16 13 C 0.02 0.26 5.36 -3.77 -0.02 0.24 16 14 C 0.06 0.59 6.72 -3.77 -0.03 0.57 16 15 N -0.69 -6.83 6.91 -113.64 -0.79 -7.62 16 16 C 0.05 0.57 6.72 -3.77 -0.03 0.54 16 17 C 0.03 0.43 4.78 -3.77 -0.02 0.41 16 18 C -0.19 -3.67 8.76 -38.78 -0.34 -4.01 16 19 C 0.16 4.03 5.55 -106.59 -0.59 3.44 16 20 C -0.45 -10.96 7.16 -37.88 -0.27 -11.23 16 21 H 0.09 2.08 6.65 -52.49 -0.35 1.73 16 22 C 0.08 1.83 5.17 -17.32 -0.09 1.74 16 23 N -0.78 -18.96 10.99 55.55 0.61 -18.35 16 24 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 26 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 28 C -0.19 -4.88 8.59 -38.77 -0.33 -5.22 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 31 H 0.05 0.65 7.65 -51.93 -0.40 0.25 16 32 H 0.10 1.82 6.25 -52.49 -0.33 1.50 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.14 2.87 7.37 -52.48 -0.39 2.49 16 35 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.09 1.10 6.78 -51.93 -0.35 0.75 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.34 3.01 8.89 -39.29 -0.35 2.66 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.60 8.05 -51.93 -0.42 0.19 16 44 H 0.09 1.27 7.82 -51.93 -0.41 0.86 16 45 H 0.13 2.24 7.17 -52.49 -0.38 1.86 16 46 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 47 H 0.13 3.40 6.26 -52.48 -0.33 3.07 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -27.53 376.49 -11.58 -39.11 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.60 Total: 12.48 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -4.32 Total: -19.25 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -1.10 Total: -43.73 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.20 Total: -7.17 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.53 -11.58 -39.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242396107.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.750 kcal (2) G-P(sol) polarization free energy of solvation -27.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds