Wall clock time and date at job start Sat Apr 11 2020 05:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35806 * 117.00091 * 2 1 4 4 C 1.38406 * 120.08256 * 359.97438 * 3 2 1 5 5 C 1.38873 * 119.98711 * 180.02562 * 4 3 2 6 6 N 1.39473 * 119.91588 * 180.02562 * 5 4 3 7 7 C 1.46948 * 111.00025 * 179.97438 * 6 5 4 8 8 C 1.53049 * 109.38449 * 183.19808 * 7 6 5 9 9 N 1.46958 * 109.36095 * 301.58606 * 8 7 6 10 10 C 1.46954 * 110.88346 * 59.32262 * 9 8 7 11 11 C 1.47002 * 111.02753 * 303.78785 * 6 5 4 12 12 C 1.39150 * 120.16594 * 0.27402 * 5 4 3 13 13 C 1.37779 * 120.16957 * 359.44766 * 12 5 4 14 14 C 1.39442 * 120.00157 * 0.55301 * 13 12 5 15 15 C 1.48158 * 120.07944 * 179.74411 * 14 13 12 16 16 C 1.39042 * 119.63037 * 359.97438 * 15 14 13 17 17 C 1.40782 * 118.75739 * 179.97438 * 16 15 14 18 18 C 1.41530 * 120.97892 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00608 * 23.18516 * 18 17 16 20 20 C 1.40048 * 119.99892 * 203.18792 * 18 17 16 21 21 N 1.30732 * 119.99890 * 17.30812 * 20 18 17 22 22 Si 1.86802 * 119.99949 * 197.31055 * 20 18 17 23 23 H 1.48507 * 109.46801 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47348 * 119.99674 * 22 20 18 25 25 H 1.48499 * 109.47099 * 240.00097 * 22 20 18 26 26 C 1.41179 * 118.03655 * 0.02562 * 17 16 15 27 27 C 1.37683 * 119.10365 * 359.97438 * 26 17 16 28 28 N 1.31963 * 121.16497 * 359.73829 * 27 26 17 29 29 H 1.09000 * 109.47479 * 59.99563 * 1 2 3 30 30 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47018 * 300.00095 * 1 2 3 32 32 H 1.07994 * 120.00508 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.49230 * 63.21971 * 7 6 5 34 34 H 1.09005 * 109.49001 * 303.17845 * 7 6 5 35 35 H 1.09001 * 109.48902 * 61.54912 * 8 7 6 36 36 H 1.08997 * 109.49278 * 181.60204 * 8 7 6 37 37 H 1.00906 * 111.00010 * 183.18831 * 9 8 7 38 38 H 1.09002 * 109.49201 * 60.64122 * 10 9 8 39 39 H 1.08994 * 109.49544 * 180.69321 * 10 9 8 40 40 H 1.09000 * 109.48411 * 56.84889 * 11 6 5 41 41 H 1.09007 * 109.49749 * 296.80598 * 11 6 5 42 42 H 1.07999 * 119.91131 * 179.73037 * 12 5 4 43 43 H 1.07991 * 119.99968 * 180.29708 * 13 12 5 44 44 H 1.07998 * 120.61704 * 359.97438 * 16 15 14 45 45 H 0.97006 * 119.99817 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.44848 * 179.97438 * 26 17 16 47 47 H 1.07996 * 119.41798 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2935 2.3719 -0.0005 5 6 1.9260 3.6082 -0.0011 6 7 1.1667 4.7781 -0.0011 7 6 2.0307 5.9667 -0.0011 8 6 1.1633 7.2252 0.0795 9 7 0.2365 7.2519 -1.0607 10 6 -0.6280 6.0635 -1.0610 11 6 0.2390 4.8048 -1.1411 12 6 3.3155 3.6827 -0.0068 13 6 4.0708 2.5304 -0.0005 14 6 3.4430 1.2853 0.0000 15 6 4.2535 0.0450 0.0010 16 6 5.6413 0.1307 0.0009 17 6 6.3933 -1.0594 0.0025 18 6 7.8083 -1.0270 0.0019 19 1 8.3287 -0.1546 0.3686 20 6 8.5336 -2.1263 -0.4742 21 7 7.9445 -3.0256 -1.2180 22 14 10.3430 -2.3075 -0.0466 23 1 10.7681 -1.1645 0.8010 24 1 10.5519 -3.5778 0.6936 25 1 11.1474 -2.3237 -1.2947 26 6 5.6944 -2.2860 0.0035 27 6 4.3177 -2.2724 0.0034 28 7 3.6460 -1.1365 0.0077 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2149 2.3170 -0.0005 33 1 2.6190 5.9887 -0.9184 34 1 2.6994 5.9303 0.8590 35 1 0.5953 7.2164 1.0097 36 1 1.8009 8.1088 0.0509 37 1 -0.3126 8.0984 -1.0606 38 1 -1.2163 6.0415 -0.1436 39 1 -1.2965 6.1002 -1.9210 40 1 -0.3985 3.9212 -1.1118 41 1 0.8065 4.8131 -2.0718 42 1 3.8032 4.6464 -0.0116 43 1 5.1490 2.5915 -0.0002 44 1 6.1330 1.0923 -0.0003 45 1 8.4468 -3.7873 -1.5475 46 1 6.2325 -3.2225 0.0042 47 1 3.7779 -3.2078 0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244282698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:33 Heat of formation + Delta-G solvation = 40.140777 kcal Electronic energy + Delta-G solvation = -28747.038855 eV Core-core repulsion = 24895.011718 eV Total energy + Delta-G solvation = -3852.027137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.46915 -39.08592 -37.99725 -36.81769 -34.59501 -33.93084 -31.54409 -30.92293 -30.68813 -29.64432 -28.10817 -26.96838 -25.93645 -25.38018 -24.04470 -22.39662 -21.85765 -20.69262 -20.54505 -19.80233 -18.22134 -17.38461 -16.63393 -16.05540 -15.66295 -15.32994 -15.28185 -15.08762 -14.96890 -14.71760 -14.47285 -14.31503 -14.09158 -13.97300 -13.45842 -13.14771 -12.87308 -12.72202 -12.52092 -12.40096 -11.89215 -11.72798 -11.61607 -11.50591 -11.38563 -11.29020 -11.18057 -11.03513 -10.83670 -10.79656 -10.59183 -10.23410 -9.76759 -9.59234 -9.35036 -8.84551 -8.18511 -8.03990 -7.97160 -7.79661 -6.87408 -6.73868 -4.54496 1.42050 1.82283 2.78353 2.92837 3.04269 3.09632 3.28675 3.60130 3.80730 3.83797 3.87875 4.19541 4.57243 4.74831 4.77801 4.84824 5.00906 5.09387 5.13801 5.20830 5.25645 5.29289 5.40215 5.43198 5.46078 5.58515 5.59418 5.62398 5.72953 5.75097 5.77932 5.90559 6.02389 6.18277 6.26666 6.50529 6.56696 6.66830 6.77286 6.89248 6.94722 6.96044 7.00976 7.16660 7.18384 7.35658 7.40916 7.53286 7.89547 7.95822 8.16773 8.50503 8.78670 8.79756 9.71283 10.10631 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002590 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.491614 B =10806.327703 C =12180.086267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.259 6.259 3 C 0.174 3.826 4 C -0.239 4.239 5 C 0.136 3.864 6 N -0.490 5.490 7 C 0.052 3.948 8 C 0.058 3.942 9 N -0.692 5.692 10 C 0.058 3.942 11 C 0.059 3.941 12 C -0.210 4.210 13 C -0.048 4.048 14 C -0.069 4.069 15 C 0.161 3.839 16 C -0.257 4.257 17 C 0.125 3.875 18 C -0.458 4.458 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.787 5.787 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.211 4.211 27 C 0.084 3.916 28 N -0.536 5.536 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.344 0.656 38 H 0.040 0.960 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.102 0.898 45 H 0.282 0.718 46 H 0.125 0.875 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.431 14.689 0.826 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.169 6.169 3 C 0.126 3.874 4 C -0.260 4.260 5 C 0.039 3.961 6 N -0.206 5.206 7 C -0.076 4.076 8 C -0.072 4.072 9 N -0.324 5.324 10 C -0.072 4.072 11 C -0.066 4.066 12 C -0.231 4.231 13 C -0.067 4.067 14 C -0.072 4.072 15 C 0.026 3.974 16 C -0.280 4.280 17 C 0.118 3.882 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.141 4.141 21 N -0.413 5.413 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.233 4.233 27 C -0.069 4.069 28 N -0.251 5.251 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.162 0.838 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.120 0.880 45 H 0.093 0.907 46 H 0.143 0.857 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.120 14.005 0.676 19.899 hybrid contribution 1.364 0.145 0.221 1.389 sum -12.756 14.150 0.897 19.072 Atomic orbital electron populations 1.23028 0.80905 1.03332 1.00184 1.86624 1.18647 1.24821 1.86828 1.18930 0.91461 0.84104 0.92903 1.20620 0.99436 0.90783 1.15176 1.18510 0.91115 0.89260 0.97263 1.59201 1.19049 1.01255 1.41123 1.22342 0.94723 0.88234 1.02251 1.22040 0.95380 0.97839 0.91946 1.60500 1.22301 1.04975 1.44632 1.22028 0.94305 0.89851 1.01002 1.22289 0.94856 0.98047 0.91456 1.20991 0.92360 0.98767 1.10935 1.20963 1.00117 0.90189 0.95457 1.18219 0.89359 0.92966 1.06626 1.18959 0.89779 0.90191 0.98439 1.21825 0.93012 0.98047 1.15162 1.17735 0.93502 0.90578 0.86424 1.19593 0.90906 1.01358 1.37048 0.90125 1.25954 1.01216 0.94637 0.92324 1.69786 1.38694 1.09892 1.22905 0.86238 0.81632 0.79452 0.79289 1.18294 1.19605 1.19907 1.22276 0.93833 0.99532 1.07696 1.21989 0.91896 0.94762 0.98232 1.67488 1.39863 0.97034 1.20665 0.93613 0.88697 0.93483 0.85694 0.92629 0.89403 0.94189 0.89929 0.83823 0.94174 0.89987 0.89832 0.92964 0.85785 0.84793 0.87993 0.90733 0.85706 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 101.05 0.99 1.27 16 2 O -0.26 -4.93 8.31 -19.13 -0.16 -5.08 16 3 C 0.17 3.29 6.69 -38.88 -0.26 3.03 16 4 C -0.24 -3.73 8.16 -39.28 -0.32 -4.05 16 5 C 0.14 2.00 5.64 -83.81 -0.47 1.53 16 6 N -0.49 -5.97 4.75 -170.92 -0.81 -6.78 16 7 C 0.05 0.54 4.29 -3.77 -0.02 0.52 16 8 C 0.06 0.48 6.72 -3.77 -0.03 0.45 16 9 N -0.69 -5.62 6.90 -113.64 -0.78 -6.41 16 10 C 0.06 0.48 6.72 -3.77 -0.03 0.45 16 11 C 0.06 0.63 5.38 -3.74 -0.02 0.61 16 12 C -0.21 -3.17 8.79 -39.41 -0.35 -3.51 16 13 C -0.05 -0.85 9.40 -39.30 -0.37 -1.21 16 14 C -0.07 -1.44 5.89 -104.74 -0.62 -2.06 16 15 C 0.16 3.90 6.73 -83.05 -0.56 3.35 16 16 C -0.26 -6.43 9.25 -38.32 -0.35 -6.79 16 17 C 0.13 3.37 5.61 -106.56 -0.60 2.77 16 18 C -0.46 -12.03 9.12 -37.65 -0.34 -12.37 16 19 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 20 C 0.08 1.93 5.20 -17.34 -0.09 1.84 16 21 N -0.79 -20.09 10.90 55.55 0.61 -19.49 16 22 Si 0.91 18.34 29.59 -169.99 -5.03 13.31 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.21 -5.56 8.80 -38.67 -0.34 -5.90 16 27 C 0.08 2.08 11.15 -17.70 -0.20 1.88 16 28 N -0.54 -13.44 8.10 -9.96 -0.08 -13.52 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 32 H 0.13 1.67 5.40 -52.49 -0.28 1.39 16 33 H 0.06 0.62 7.56 -51.93 -0.39 0.22 16 34 H 0.09 0.88 7.17 -51.93 -0.37 0.51 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.34 2.06 8.90 -39.29 -0.35 1.71 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.84 6.80 -51.93 -0.35 0.48 16 41 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.12 1.57 5.78 -52.49 -0.30 1.26 16 43 H 0.13 2.26 6.16 -52.49 -0.32 1.94 16 44 H 0.10 2.33 6.18 -52.49 -0.32 2.00 16 45 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 46 H 0.13 3.33 6.16 -52.48 -0.32 3.00 16 47 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -30.68 371.74 -10.95 -41.64 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.33 Total: 8.91 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -3.96 Total: -18.19 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -1.07 Total: -46.19 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.16 Total: -5.08 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.68 -10.95 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244282698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.776 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds