Wall clock time and date at job start Sat Apr 11 2020 05:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35806 * 117.00091 * 2 1 4 4 C 1.38406 * 120.08256 * 359.97438 * 3 2 1 5 5 C 1.38873 * 119.98711 * 180.02562 * 4 3 2 6 6 N 1.39473 * 119.91588 * 180.02562 * 5 4 3 7 7 C 1.46948 * 111.00025 * 179.97438 * 6 5 4 8 8 C 1.53049 * 109.38449 * 183.19808 * 7 6 5 9 9 N 1.46958 * 109.36095 * 301.58606 * 8 7 6 10 10 C 1.46954 * 110.88346 * 59.32262 * 9 8 7 11 11 C 1.47002 * 111.02753 * 303.78785 * 6 5 4 12 12 C 1.39150 * 120.16594 * 0.27402 * 5 4 3 13 13 C 1.37779 * 120.16957 * 359.44766 * 12 5 4 14 14 C 1.39442 * 120.00157 * 0.55301 * 13 12 5 15 15 C 1.48158 * 120.07944 * 179.74411 * 14 13 12 16 16 C 1.39042 * 119.63037 * 359.97438 * 15 14 13 17 17 C 1.40782 * 118.75739 * 179.97438 * 16 15 14 18 18 C 1.41530 * 120.97892 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00608 * 23.18516 * 18 17 16 20 20 C 1.40048 * 119.99892 * 203.18792 * 18 17 16 21 21 N 1.30732 * 119.99890 * 17.30812 * 20 18 17 22 22 Si 1.86802 * 119.99949 * 197.31055 * 20 18 17 23 23 H 1.48507 * 109.46801 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47348 * 119.99674 * 22 20 18 25 25 H 1.48499 * 109.47099 * 240.00097 * 22 20 18 26 26 C 1.41179 * 118.03655 * 0.02562 * 17 16 15 27 27 C 1.37683 * 119.10365 * 359.97438 * 26 17 16 28 28 N 1.31963 * 121.16497 * 359.73829 * 27 26 17 29 29 H 1.09000 * 109.47479 * 59.99563 * 1 2 3 30 30 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47018 * 300.00095 * 1 2 3 32 32 H 1.07994 * 120.00508 * 0.02562 * 4 3 2 33 33 H 1.09002 * 109.49230 * 63.21971 * 7 6 5 34 34 H 1.09005 * 109.49001 * 303.17845 * 7 6 5 35 35 H 1.09001 * 109.48902 * 61.54912 * 8 7 6 36 36 H 1.08997 * 109.49278 * 181.60204 * 8 7 6 37 37 H 1.00906 * 111.00010 * 183.18831 * 9 8 7 38 38 H 1.09002 * 109.49201 * 60.64122 * 10 9 8 39 39 H 1.08994 * 109.49544 * 180.69321 * 10 9 8 40 40 H 1.09000 * 109.48411 * 56.84889 * 11 6 5 41 41 H 1.09007 * 109.49749 * 296.80598 * 11 6 5 42 42 H 1.07999 * 119.91131 * 179.73037 * 12 5 4 43 43 H 1.07991 * 119.99968 * 180.29708 * 13 12 5 44 44 H 1.07998 * 120.61704 * 359.97438 * 16 15 14 45 45 H 0.97006 * 119.99817 * 180.02562 * 21 20 18 46 46 H 1.08003 * 120.44848 * 179.97438 * 26 17 16 47 47 H 1.07996 * 119.41798 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2935 2.3719 -0.0005 5 6 1.9260 3.6082 -0.0011 6 7 1.1667 4.7781 -0.0011 7 6 2.0307 5.9667 -0.0011 8 6 1.1633 7.2252 0.0795 9 7 0.2365 7.2519 -1.0607 10 6 -0.6280 6.0635 -1.0610 11 6 0.2390 4.8048 -1.1411 12 6 3.3155 3.6827 -0.0068 13 6 4.0708 2.5304 -0.0005 14 6 3.4430 1.2853 0.0000 15 6 4.2535 0.0450 0.0010 16 6 5.6413 0.1307 0.0009 17 6 6.3933 -1.0594 0.0025 18 6 7.8083 -1.0270 0.0019 19 1 8.3287 -0.1546 0.3686 20 6 8.5336 -2.1263 -0.4742 21 7 7.9445 -3.0256 -1.2180 22 14 10.3430 -2.3075 -0.0466 23 1 10.7681 -1.1645 0.8010 24 1 10.5519 -3.5778 0.6936 25 1 11.1474 -2.3237 -1.2947 26 6 5.6944 -2.2860 0.0035 27 6 4.3177 -2.2724 0.0034 28 7 3.6460 -1.1365 0.0077 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2149 2.3170 -0.0005 33 1 2.6190 5.9887 -0.9184 34 1 2.6994 5.9303 0.8590 35 1 0.5953 7.2164 1.0097 36 1 1.8009 8.1088 0.0509 37 1 -0.3126 8.0984 -1.0606 38 1 -1.2163 6.0415 -0.1436 39 1 -1.2965 6.1002 -1.9210 40 1 -0.3985 3.9212 -1.1118 41 1 0.8065 4.8131 -2.0718 42 1 3.8032 4.6464 -0.0116 43 1 5.1490 2.5915 -0.0002 44 1 6.1330 1.0923 -0.0003 45 1 8.4468 -3.7873 -1.5475 46 1 6.2325 -3.2225 0.0042 47 1 3.7779 -3.2078 0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244282698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:32 Heat of formation + Delta-G solvation = 20.164671 kcal Electronic energy + Delta-G solvation = -28747.905084 eV Core-core repulsion = 24895.011718 eV Total energy + Delta-G solvation = -3852.893366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.63553 -40.32627 -39.67980 -37.95071 -36.08876 -35.37014 -32.63274 -32.44013 -32.30827 -30.87225 -29.52844 -28.14665 -27.70657 -26.53353 -24.94567 -23.88096 -23.37872 -22.09919 -22.04326 -20.77189 -19.60901 -18.87951 -17.60139 -17.49248 -17.18101 -16.68645 -16.51660 -16.33051 -16.11578 -15.93843 -15.72202 -15.55570 -15.25712 -15.08853 -14.84581 -14.55502 -14.36967 -14.25571 -14.01152 -13.46404 -13.28054 -13.14191 -12.98516 -12.83551 -12.69366 -12.55440 -12.30865 -12.19373 -11.99572 -11.94053 -11.89042 -11.71182 -11.63024 -11.25401 -10.81139 -9.95290 -9.73291 -9.66064 -9.45347 -9.31570 -8.70347 -8.33369 -6.54343 -0.01917 0.52293 0.95746 1.19848 1.38264 1.53838 1.58353 2.18466 2.49663 2.59875 2.77143 2.98319 3.25281 3.68306 3.78037 3.83151 3.89042 4.02139 4.10516 4.16947 4.25658 4.30794 4.38305 4.38868 4.44066 4.44375 4.51332 4.65591 4.69479 4.76779 4.78294 4.87237 4.90143 4.97792 4.99170 5.00360 5.01897 5.07639 5.22706 5.25492 5.51161 5.53650 5.58376 5.70357 5.86731 5.93431 6.02404 6.16901 6.24570 6.47110 6.54223 6.68972 6.82509 6.83910 7.79631 8.26123 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.002590 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.491614 B =10806.327703 C =12180.086267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.295 6.295 3 C 0.169 3.831 4 C -0.236 4.236 5 C 0.152 3.848 6 N -0.491 5.491 7 C 0.046 3.954 8 C 0.062 3.938 9 N -0.700 5.700 10 C 0.063 3.937 11 C 0.056 3.944 12 C -0.209 4.209 13 C -0.046 4.046 14 C -0.122 4.122 15 C 0.162 3.838 16 C -0.281 4.281 17 C 0.098 3.902 18 C -0.489 4.489 19 H 0.082 0.918 20 C 0.037 3.963 21 N -0.816 5.816 22 Si 0.988 3.012 23 H -0.256 1.256 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.238 4.238 27 C 0.080 3.920 28 N -0.547 5.547 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.040 0.960 36 H 0.101 0.899 37 H 0.358 0.642 38 H 0.043 0.957 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.151 0.849 43 H 0.133 0.867 44 H 0.113 0.887 45 H 0.292 0.708 46 H 0.114 0.886 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.559 17.083 0.884 22.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.206 6.206 3 C 0.120 3.880 4 C -0.257 4.257 5 C 0.053 3.947 6 N -0.206 5.206 7 C -0.081 4.081 8 C -0.067 4.067 9 N -0.333 5.333 10 C -0.067 4.067 11 C -0.069 4.069 12 C -0.230 4.230 13 C -0.065 4.065 14 C -0.124 4.124 15 C 0.028 3.972 16 C -0.303 4.303 17 C 0.091 3.909 18 C -0.520 4.520 19 H 0.100 0.900 20 C -0.180 4.180 21 N -0.442 5.442 22 Si 0.808 3.192 23 H -0.180 1.180 24 H -0.187 1.187 25 H -0.188 1.188 26 C -0.260 4.260 27 C -0.072 4.072 28 N -0.262 5.262 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.059 0.941 36 H 0.119 0.881 37 H 0.178 0.822 38 H 0.061 0.939 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.131 0.869 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.289 16.432 0.725 22.457 hybrid contribution 1.503 -0.437 0.173 1.575 sum -13.786 15.995 0.898 21.135 Atomic orbital electron populations 1.23315 0.78163 1.04827 1.01755 1.86546 1.21665 1.25512 1.86872 1.19038 0.91061 0.85111 0.92745 1.20777 1.00441 0.89957 1.14571 1.18758 0.91232 0.90171 0.94509 1.59224 1.19010 1.00802 1.41584 1.22481 0.95097 0.88382 1.02153 1.22015 0.95418 0.97259 0.92037 1.60486 1.22668 1.05632 1.44530 1.22007 0.93935 0.88763 1.01982 1.22401 0.94647 0.99820 0.90046 1.21235 0.92698 0.98883 1.10148 1.21038 1.00362 0.90175 0.94952 1.18281 0.90432 0.92331 1.11341 1.19529 0.90138 0.91398 0.96097 1.22008 0.93707 0.98086 1.16538 1.18146 0.94444 0.91470 0.86857 1.19872 0.91138 1.02578 1.38362 0.90008 1.26883 1.06062 0.93623 0.91425 1.69835 1.40868 1.10405 1.23104 0.85070 0.75249 0.79579 0.79272 1.17962 1.18704 1.18819 1.22232 0.94514 0.99059 1.10243 1.22363 0.91678 0.95907 0.97267 1.67637 1.39798 0.97306 1.21429 0.91799 0.87436 0.91929 0.83263 0.93154 0.89016 0.94147 0.88121 0.82211 0.93909 0.88192 0.89238 0.94122 0.83160 0.84902 0.86883 0.89739 0.86769 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.35 9.81 113.37 1.11 1.47 16 2 O -0.29 -11.24 8.31 -91.38 -0.76 -12.00 16 3 C 0.17 6.36 6.69 22.72 0.15 6.51 16 4 C -0.24 -6.99 8.16 22.46 0.18 -6.81 16 5 C 0.15 4.18 5.64 38.30 0.22 4.39 16 6 N -0.49 -10.61 4.75 -694.68 -3.30 -13.91 16 7 C 0.05 0.82 4.29 86.31 0.37 1.19 16 8 C 0.06 0.83 6.72 86.31 0.58 1.41 16 9 N -0.70 -9.02 6.90 -513.45 -3.54 -12.57 16 10 C 0.06 0.83 6.72 86.31 0.58 1.41 16 11 C 0.06 1.03 5.38 86.30 0.46 1.49 16 12 C -0.21 -6.04 8.79 22.38 0.20 -5.84 16 13 C -0.05 -1.64 9.40 22.45 0.21 -1.42 16 14 C -0.12 -5.17 5.89 -19.94 -0.12 -5.29 16 15 C 0.16 8.24 6.73 41.82 0.28 8.53 16 16 C -0.28 -14.79 9.25 23.09 0.21 -14.57 16 17 C 0.10 5.58 5.61 -21.12 -0.12 5.46 16 18 C -0.49 -26.71 9.12 23.52 0.21 -26.49 16 19 H 0.08 4.27 7.90 -2.91 -0.02 4.25 16 20 C 0.04 1.86 5.20 85.30 0.44 2.30 16 21 N -0.82 -42.82 10.90 21.84 0.24 -42.58 16 22 Si 0.99 37.84 29.59 68.60 2.03 39.87 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 24 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 25 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 26 C -0.24 -13.21 8.80 22.86 0.20 -13.01 16 27 C 0.08 4.16 11.15 84.54 0.94 5.11 16 28 N -0.55 -28.47 8.10 -185.43 -1.50 -29.97 16 29 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 30 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 1.34 7.66 -2.38 -0.02 1.32 16 32 H 0.15 3.58 5.40 -2.91 -0.02 3.56 16 33 H 0.05 0.98 7.56 -2.39 -0.02 0.97 16 34 H 0.09 1.58 7.17 -2.38 -0.02 1.56 16 35 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.36 3.04 8.90 -89.69 -0.80 2.24 16 38 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.52 6.80 -2.39 -0.02 1.50 16 41 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.15 3.48 5.78 -2.91 -0.02 3.46 16 43 H 0.13 4.63 6.16 -2.92 -0.02 4.61 16 44 H 0.11 5.46 6.18 -2.91 -0.02 5.44 16 45 H 0.29 13.65 8.29 -92.70 -0.77 12.88 16 46 H 0.11 6.44 6.16 -2.91 -0.02 6.42 16 47 H 0.14 6.41 8.06 -2.91 -0.02 6.39 16 Total: -1.00 -69.46 371.74 -0.49 -69.95 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: 0.22 Total: 35.37 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 6.13 Total: -34.17 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -8.11 Total: -99.03 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.76 Total: -12.00 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -69.46 -0.49 -69.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244282698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.116 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds