Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35747 * 116.99817 * 2 1 4 4 C 1.38312 * 120.10330 * 0.02562 * 3 2 1 5 5 C 1.38963 * 120.01788 * 180.02562 * 4 3 2 6 6 N 1.39244 * 119.89289 * 179.97438 * 5 4 3 7 7 C 1.46953 * 111.00228 * 56.21730 * 6 5 4 8 8 C 1.53051 * 109.36689 * 183.18867 * 7 6 5 9 9 N 1.46955 * 109.36561 * 301.60204 * 8 7 6 10 10 C 1.46953 * 110.88123 * 59.31630 * 9 8 7 11 11 C 1.46955 * 111.00122 * 180.02562 * 6 5 4 12 12 C 1.39344 * 120.21173 * 0.02562 * 5 4 3 13 13 C 1.37587 * 120.20695 * 0.25649 * 12 5 4 14 14 C 1.39796 * 119.98142 * 359.45472 * 13 12 5 15 15 C 1.47615 * 120.10855 * 180.29208 * 14 13 12 16 16 C 1.40080 * 119.46559 * 0.27139 * 15 14 13 17 17 C 1.36488 * 119.46189 * 179.97438 * 16 15 14 18 18 C 1.41366 * 118.43318 * 0.02562 * 17 16 15 19 19 C 1.40985 * 120.54318 * 179.97438 * 18 17 16 20 20 H 1.08005 * 119.99870 * 330.30862 * 19 18 17 21 21 C 1.39951 * 120.00276 * 150.31052 * 19 18 17 22 22 N 1.30849 * 119.99819 * 161.80125 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 341.80132 * 21 19 18 24 24 H 1.48499 * 109.47013 * 95.41046 * 23 21 19 25 25 H 1.48498 * 109.46953 * 215.41065 * 23 21 19 26 26 H 1.48502 * 109.46845 * 335.41338 * 23 21 19 27 27 C 1.40958 * 118.91712 * 359.97438 * 18 17 16 28 28 N 1.31251 * 120.41649 * 359.74482 * 27 18 17 29 29 H 1.09000 * 109.47090 * 299.99301 * 1 2 3 30 30 H 1.08996 * 109.47586 * 59.99432 * 1 2 3 31 31 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99303 * 0.03428 * 4 3 2 33 33 H 1.09002 * 109.48951 * 303.15853 * 7 6 5 34 34 H 1.08997 * 109.48749 * 63.22183 * 7 6 5 35 35 H 1.09002 * 109.49066 * 181.63027 * 8 7 6 36 36 H 1.09007 * 109.50447 * 61.58035 * 8 7 6 37 37 H 1.00902 * 110.99806 * 295.44868 * 9 8 7 38 38 H 1.09002 * 109.48951 * 180.71309 * 10 9 8 39 39 H 1.09003 * 109.50707 * 60.65916 * 10 9 8 40 40 H 1.09007 * 109.48455 * 296.77584 * 11 6 5 41 41 H 1.08998 * 109.49082 * 56.82006 * 11 6 5 42 42 H 1.08000 * 119.89595 * 179.97438 * 12 5 4 43 43 H 1.08004 * 120.00895 * 179.71854 * 13 12 5 44 44 H 1.08002 * 120.27389 * 0.02562 * 16 15 14 45 45 H 1.07998 * 120.78569 * 180.02562 * 17 16 15 46 46 H 0.96998 * 119.99678 * 179.97438 * 22 21 19 47 47 H 1.08007 * 119.79347 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.2940 2.3708 0.0005 5 6 1.9266 3.6081 0.0000 6 7 1.1678 4.7756 0.0000 7 6 0.2416 4.8017 1.1406 8 6 -0.6271 6.0593 1.0603 9 7 0.2362 7.2485 1.0592 10 6 1.1624 7.2224 -0.0814 11 6 2.0311 5.9648 -0.0012 12 6 3.3180 3.6841 -0.0016 13 6 4.0741 2.5346 -0.0080 14 6 3.4464 1.2856 -0.0014 15 6 4.2549 0.0505 -0.0017 16 6 5.6527 0.1420 -0.0029 17 6 6.4002 -1.0000 -0.0027 18 6 5.7286 -2.2440 -0.0018 19 6 6.4568 -3.4513 -0.0021 20 1 7.4311 -3.4941 -0.4662 21 6 5.9172 -4.5941 0.5990 22 7 6.3962 -5.7758 0.3055 23 14 4.5130 -4.4325 1.8203 24 1 3.2203 -4.6347 1.1179 25 1 4.6630 -5.4564 2.8853 26 1 4.5394 -3.0780 2.4284 27 6 4.3191 -2.2577 -0.0006 28 7 3.6437 -1.1323 0.0047 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2153 2.3161 0.0015 33 1 -0.3952 3.9175 1.1123 34 1 0.8101 4.8112 2.0705 35 1 -1.2950 6.0955 1.9210 36 1 -1.2163 6.0367 0.1435 37 1 0.7380 7.3319 1.9307 38 1 1.7992 8.1066 -0.0531 39 1 0.5942 7.2131 -1.0115 40 1 2.6200 5.9876 0.9158 41 1 2.6991 5.9284 -0.8617 42 1 3.8044 4.6484 -0.0025 43 1 5.1523 2.5973 -0.0139 44 1 6.1351 1.1083 -0.0032 45 1 7.4792 -0.9544 -0.0032 46 1 6.0225 -6.5679 0.7223 47 1 3.7916 -3.2002 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244286229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = 40.197918 kcal Electronic energy + Delta-G solvation = -28921.728574 eV Core-core repulsion = 25069.703915 eV Total energy + Delta-G solvation = -3852.024659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -40.58273 -39.25404 -38.32630 -36.89161 -34.63775 -33.82166 -31.64454 -31.49939 -31.04587 -29.70443 -28.97639 -26.98577 -26.12138 -24.56063 -24.00591 -22.61347 -22.08577 -21.15134 -20.82611 -20.11580 -18.14281 -17.73062 -16.54262 -16.18924 -15.98054 -15.61999 -15.39263 -15.26156 -15.11804 -14.86329 -14.61245 -14.32758 -14.09085 -13.80001 -13.59980 -13.12963 -12.97557 -12.89114 -12.68238 -12.52153 -12.20157 -11.90996 -11.71195 -11.66538 -11.62513 -11.51692 -11.16964 -11.05741 -10.96385 -10.80427 -10.69903 -10.51501 -10.06742 -9.69728 -9.39299 -8.80871 -8.60579 -8.26597 -8.12771 -8.01815 -7.18451 -7.04650 -4.61799 1.33199 1.76986 2.52726 2.66321 3.05403 3.14705 3.23557 3.48483 3.76545 3.84329 3.90037 4.03923 4.55245 4.62956 4.71197 4.78642 4.85753 4.93158 5.08900 5.14638 5.21727 5.25210 5.36193 5.37302 5.40353 5.43208 5.45447 5.56835 5.62745 5.69614 5.72986 5.76804 5.89658 6.01198 6.14063 6.21447 6.34847 6.47268 6.54782 6.59682 6.73668 6.84750 6.88298 6.95001 6.96619 7.10624 7.26712 7.41607 7.51119 7.83614 7.94336 8.05880 8.36705 8.50296 9.44989 9.81149 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023423 B = 0.002642 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.105474 B =10594.530819 C =11399.721259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.264 6.264 3 C 0.157 3.843 4 C -0.228 4.228 5 C 0.117 3.883 6 N -0.483 5.483 7 C 0.020 3.980 8 C 0.058 3.942 9 N -0.687 5.687 10 C 0.058 3.942 11 C 0.013 3.987 12 C -0.201 4.201 13 C -0.073 4.073 14 C -0.036 4.036 15 C 0.004 3.996 16 C -0.108 4.108 17 C -0.184 4.184 18 C 0.045 3.955 19 C -0.419 4.419 20 H 0.096 0.904 21 C 0.082 3.918 22 N -0.789 5.789 23 Si 0.912 3.088 24 H -0.262 1.262 25 H -0.286 1.286 26 H -0.245 1.245 27 C -0.028 4.028 28 N -0.412 5.412 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.339 0.661 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.128 0.872 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.291 0.709 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.776 18.660 2.329 21.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.175 6.175 3 C 0.109 3.891 4 C -0.249 4.249 5 C 0.020 3.980 6 N -0.199 5.199 7 C -0.108 4.108 8 C -0.072 4.072 9 N -0.315 5.315 10 C -0.072 4.072 11 C -0.115 4.115 12 C -0.222 4.222 13 C -0.093 4.093 14 C -0.039 4.039 15 C -0.130 4.130 16 C -0.128 4.128 17 C -0.209 4.209 18 C 0.039 3.961 19 C -0.447 4.447 20 H 0.114 0.886 21 C -0.140 4.140 22 N -0.411 5.411 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.213 1.213 26 H -0.168 1.168 27 C -0.194 4.194 28 N -0.119 5.119 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.138 0.862 43 H 0.146 0.854 44 H 0.123 0.877 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.340 18.633 1.598 22.406 hybrid contribution 1.340 -0.847 1.326 2.067 sum -11.000 17.786 2.924 21.116 Atomic orbital electron populations 1.23019 0.80786 1.03378 1.00185 1.86562 1.18775 1.25014 1.87103 1.18930 0.91471 0.84066 0.94668 1.20609 0.99364 0.90792 1.14172 1.18478 0.91033 0.89280 0.99240 1.59095 1.18875 1.01090 1.40825 1.22978 0.95737 1.01112 0.90953 1.22159 0.95248 0.86400 1.03400 1.60737 1.24716 1.39850 1.06203 1.22163 0.94140 0.95620 0.95306 1.23009 0.95737 0.90662 1.02126 1.20923 0.92357 0.98540 1.10347 1.20811 0.99545 0.90285 0.98680 1.18062 0.89156 0.92491 1.04152 1.18672 0.89449 0.90036 1.14855 1.21265 0.94091 0.97835 0.99659 1.20994 0.98625 0.91979 1.09309 1.18723 0.93227 0.93783 0.90339 1.19507 1.04550 0.91322 1.29276 0.88639 1.26274 0.97087 0.94184 0.96447 1.69686 1.37786 0.99314 1.34336 0.86298 0.80219 0.79953 0.79808 1.18764 1.21323 1.16848 1.22500 0.91163 0.94906 1.10805 1.67163 1.40524 0.97561 1.06672 0.93673 0.93405 0.88683 0.85816 0.89687 0.94073 0.89946 0.89851 0.84382 0.89900 0.89880 0.93768 0.89278 0.86155 0.85405 0.87652 0.87174 0.89872 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 101.05 0.99 1.29 16 2 O -0.26 -5.06 8.29 -18.95 -0.16 -5.21 16 3 C 0.16 2.91 6.69 -38.77 -0.26 2.65 16 4 C -0.23 -3.51 8.16 -39.29 -0.32 -3.83 16 5 C 0.12 1.66 5.64 -83.81 -0.47 1.19 16 6 N -0.48 -5.55 4.74 -170.94 -0.81 -6.36 16 7 C 0.02 0.19 5.37 -3.77 -0.02 0.17 16 8 C 0.06 0.45 6.72 -3.77 -0.03 0.43 16 9 N -0.69 -5.35 6.91 -113.63 -0.79 -6.14 16 10 C 0.06 0.44 6.72 -3.77 -0.03 0.42 16 11 C 0.01 0.13 4.28 -3.77 -0.02 0.11 16 12 C -0.20 -2.86 8.78 -39.41 -0.35 -3.20 16 13 C -0.07 -1.20 9.40 -39.24 -0.37 -1.57 16 14 C -0.04 -0.72 5.90 -104.70 -0.62 -1.34 16 15 C 0.00 0.09 6.73 -82.78 -0.56 -0.47 16 16 C -0.11 -2.31 9.38 -39.52 -0.37 -2.69 16 17 C -0.18 -4.22 9.87 -39.02 -0.39 -4.60 16 18 C 0.04 1.12 5.12 -106.64 -0.55 0.58 16 19 C -0.42 -10.86 9.57 -37.90 -0.36 -11.22 16 20 H 0.10 2.55 8.06 -52.48 -0.42 2.13 16 21 C 0.08 2.06 5.41 -17.33 -0.09 1.96 16 22 N -0.79 -19.94 13.93 55.55 0.77 -19.17 16 23 Si 0.91 20.44 24.52 -169.99 -4.17 16.27 16 24 H -0.26 -5.76 6.71 56.52 0.38 -5.38 16 25 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.25 -5.84 6.86 56.52 0.39 -5.45 16 27 C -0.03 -0.72 8.36 -16.77 -0.14 -0.86 16 28 N -0.41 -10.23 8.09 -9.13 -0.07 -10.30 16 29 H 0.04 0.53 7.66 -51.93 -0.40 0.13 16 30 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.12 1.66 5.39 -52.48 -0.28 1.38 16 33 H 0.08 0.83 6.79 -51.93 -0.35 0.47 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.34 2.32 8.89 -39.29 -0.35 1.97 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.41 7.57 -51.92 -0.39 0.02 16 41 H 0.09 0.83 7.15 -51.93 -0.37 0.46 16 42 H 0.12 1.41 5.77 -52.49 -0.30 1.11 16 43 H 0.13 1.87 6.14 -52.48 -0.32 1.54 16 44 H 0.11 1.87 6.14 -52.49 -0.32 1.54 16 45 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 46 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 47 H 0.13 3.24 4.72 -52.48 -0.25 2.99 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -29.44 366.22 -9.93 -39.37 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.29 Total: 7.01 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.94 Total: -20.99 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.90 Total: -41.97 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.16 Total: -5.21 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.17 Total: 16.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.44 -9.93 -39.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244286229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.567 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds