Wall clock time and date at job start Sat Apr 11 2020 05:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35808 * 117.00365 * 2 1 4 4 C 1.38410 * 120.08249 * 0.02562 * 3 2 1 5 5 C 1.38868 * 119.99101 * 179.97438 * 4 3 2 6 6 N 1.39474 * 119.91987 * 179.97438 * 5 4 3 7 7 C 1.46958 * 110.99864 * 56.19717 * 6 5 4 8 8 C 1.53054 * 109.36323 * 183.19128 * 7 6 5 9 9 N 1.46964 * 109.36495 * 301.59741 * 8 7 6 10 10 C 1.46951 * 110.87751 * 59.32011 * 9 8 7 11 11 C 1.46964 * 111.00289 * 179.97438 * 6 5 4 12 12 C 1.39151 * 120.16498 * 0.02562 * 5 4 3 13 13 C 1.37785 * 120.16371 * 359.70803 * 12 5 4 14 14 C 1.39429 * 120.00538 * 0.54857 * 13 12 5 15 15 C 1.48199 * 120.07811 * 179.74915 * 14 13 12 16 16 C 1.40130 * 120.82843 * 129.72660 * 15 14 13 17 17 C 1.38427 * 119.41647 * 179.97438 * 16 15 14 18 18 N 1.31517 * 121.15897 * 0.02562 * 17 16 15 19 19 C 1.33677 * 121.81206 * 359.97438 * 18 17 16 20 20 C 1.41435 * 119.77515 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99664 * 187.07484 * 20 19 18 22 22 C 1.40021 * 120.00323 * 7.07603 * 20 19 18 23 23 N 1.30742 * 120.00414 * 182.55358 * 22 20 19 24 24 Si 1.86807 * 119.99952 * 2.55173 * 22 20 19 25 25 H 1.48500 * 109.47039 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.46811 * 300.00180 * 24 22 20 27 27 H 1.48498 * 109.46871 * 59.99628 * 24 22 20 28 28 C 1.39425 * 120.83008 * 309.99342 * 15 14 13 29 29 H 1.09005 * 109.46844 * 60.00009 * 1 2 3 30 30 H 1.08995 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47720 * 300.00940 * 1 2 3 32 32 H 1.07997 * 120.00090 * 359.95060 * 4 3 2 33 33 H 1.08996 * 109.48769 * 303.15426 * 7 6 5 34 34 H 1.08998 * 109.48913 * 63.22654 * 7 6 5 35 35 H 1.08995 * 109.48984 * 181.63247 * 8 7 6 36 36 H 1.08995 * 109.50884 * 61.57520 * 8 7 6 37 37 H 1.00904 * 110.99663 * 295.46008 * 9 8 7 38 38 H 1.09003 * 109.48780 * 180.71291 * 10 9 8 39 39 H 1.09001 * 109.50943 * 60.65761 * 10 9 8 40 40 H 1.09003 * 109.48585 * 296.77789 * 11 6 5 41 41 H 1.09000 * 109.48403 * 56.82040 * 11 6 5 42 42 H 1.08002 * 119.92251 * 179.97438 * 12 5 4 43 43 H 1.08004 * 119.99852 * 180.27564 * 13 12 5 44 44 H 1.08002 * 120.28927 * 0.02562 * 16 15 14 45 45 H 1.07998 * 119.42021 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99771 * 354.84485 * 23 22 20 47 47 H 1.08003 * 120.58820 * 0.02739 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2935 2.3720 0.0005 5 6 1.9260 3.6082 0.0011 6 7 1.1667 4.7781 0.0011 7 6 0.2393 4.8041 1.1408 8 6 -0.6285 6.0623 1.0604 9 7 0.2356 7.2510 1.0611 10 6 1.1630 7.2251 -0.0786 11 6 2.0308 5.9669 0.0023 12 6 3.3155 3.6827 0.0005 13 6 4.0707 2.5303 0.0055 14 6 3.4429 1.2853 -0.0004 15 6 4.2536 0.0447 -0.0006 16 6 3.9989 -0.9797 0.9210 17 6 4.7739 -2.1264 0.8943 18 7 5.7453 -2.2710 0.0195 19 6 6.0295 -1.3246 -0.8808 20 6 7.0842 -1.5251 -1.8015 21 1 7.3921 -0.7210 -2.4535 22 6 7.7293 -2.7661 -1.8679 23 7 8.7368 -2.9365 -2.6834 24 14 7.1503 -4.1785 -0.7909 25 1 7.9926 -5.3742 -1.0477 26 1 7.2647 -3.7905 0.6379 27 1 5.7338 -4.4931 -1.1065 28 6 5.2922 -0.1300 -0.9143 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 0.2149 2.3171 0.0001 33 1 -0.3980 3.9203 1.1112 34 1 0.8069 4.8126 2.0713 35 1 -1.2972 6.0983 1.9204 36 1 -1.2166 6.0408 0.1430 37 1 0.7366 7.3334 1.9331 38 1 1.8003 8.1089 -0.0490 39 1 0.5957 7.2167 -1.0093 40 1 2.6183 5.9884 0.9201 41 1 2.7001 5.9308 -0.8573 42 1 3.8034 4.6463 0.0005 43 1 5.1490 2.5912 0.0096 44 1 3.2045 -0.8758 1.6452 45 1 4.5780 -2.9158 1.6048 46 1 8.9901 -2.2282 -3.2959 47 1 5.5229 0.6381 -1.6375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244291170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:23 Heat of formation + Delta-G solvation = 24.381207 kcal Electronic energy + Delta-G solvation = -28852.560701 eV Core-core repulsion = 24999.850178 eV Total energy + Delta-G solvation = -3852.710523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.81032 -39.47571 -38.39481 -37.16289 -34.78642 -33.68928 -31.86103 -31.76566 -30.39867 -29.98045 -28.71342 -27.22233 -25.71947 -25.33318 -24.18202 -22.76934 -21.90980 -21.16865 -20.99446 -20.27296 -18.51884 -18.01735 -16.54497 -16.24908 -16.12820 -15.73022 -15.55463 -15.29054 -15.04652 -14.87000 -14.77028 -14.55013 -14.12155 -13.94641 -13.70164 -13.34202 -12.90945 -12.78948 -12.67653 -12.61861 -12.19416 -12.07235 -11.93518 -11.83949 -11.75882 -11.74094 -11.24830 -11.12082 -11.00143 -10.69148 -10.56466 -10.02878 -9.79017 -9.53662 -9.25274 -8.91295 -8.64196 -8.42201 -7.92347 -7.64569 -7.48503 -7.18119 -4.73727 1.23111 1.50369 2.58403 2.62466 3.27203 3.41504 3.66610 3.71396 3.80161 3.87988 4.08198 4.50419 4.50917 4.57034 4.65754 4.67989 4.73528 4.82290 4.91229 4.96625 5.07174 5.11261 5.12996 5.17144 5.23879 5.32795 5.41266 5.46541 5.52871 5.58346 5.60322 5.65452 5.75092 5.76543 6.01968 6.23021 6.30413 6.41930 6.45258 6.54519 6.59447 6.68365 6.76572 6.86380 7.00643 7.04430 7.27555 7.43451 7.49482 7.58424 7.71519 8.11560 8.33718 8.68334 9.52335 10.05496 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.002605 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.546719 B =10744.903454 C =11640.236902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.295 6.295 3 C 0.163 3.837 4 C -0.230 4.230 5 C 0.136 3.864 6 N -0.484 5.484 7 C 0.020 3.980 8 C 0.058 3.942 9 N -0.687 5.687 10 C 0.058 3.942 11 C 0.012 3.988 12 C -0.206 4.206 13 C -0.045 4.045 14 C -0.079 4.079 15 C 0.027 3.973 16 C -0.282 4.282 17 C 0.147 3.853 18 N -0.574 5.574 19 C 0.251 3.749 20 C -0.477 4.477 21 H 0.080 0.920 22 C 0.043 3.957 23 N -0.808 5.808 24 Si 1.156 2.844 25 H -0.334 1.334 26 H -0.279 1.279 27 H -0.294 1.294 28 C -0.244 4.244 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.340 0.660 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.127 0.873 46 H 0.282 0.718 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.542 16.665 7.321 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.207 6.207 3 C 0.116 3.884 4 C -0.251 4.251 5 C 0.038 3.962 6 N -0.200 5.200 7 C -0.108 4.108 8 C -0.072 4.072 9 N -0.315 5.315 10 C -0.072 4.072 11 C -0.117 4.117 12 C -0.227 4.227 13 C -0.064 4.064 14 C -0.080 4.080 15 C 0.021 3.979 16 C -0.305 4.305 17 C -0.013 4.013 18 N -0.294 5.294 19 C 0.128 3.872 20 C -0.509 4.509 21 H 0.098 0.902 22 C -0.177 4.177 23 N -0.430 5.430 24 Si 0.991 3.009 25 H -0.268 1.268 26 H -0.207 1.207 27 H -0.222 1.222 28 C -0.266 4.266 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.121 0.879 45 H 0.145 0.855 46 H 0.093 0.907 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.357 14.776 6.866 23.806 hybrid contribution 0.001 1.986 0.214 1.998 sum -17.356 16.762 7.080 25.146 Atomic orbital electron populations 1.23043 0.79251 1.03818 1.00817 1.86273 1.20428 1.26122 1.87872 1.18820 0.91288 0.83927 0.94356 1.20603 0.99574 0.90659 1.14280 1.18561 0.91099 0.89442 0.97082 1.59138 1.18793 1.01056 1.41015 1.22992 0.95658 1.01321 0.90802 1.22166 0.95239 0.86279 1.03528 1.60728 1.24681 1.39828 1.06230 1.22169 0.94126 0.95559 0.95360 1.23049 0.95770 0.90570 1.02300 1.21053 0.92427 0.98901 1.10294 1.20959 0.99943 0.90184 0.95273 1.18325 0.89427 0.93900 1.06370 1.18463 0.93264 0.91381 0.94754 1.21103 1.06562 0.97104 1.05769 1.22001 0.89978 0.94897 0.94445 1.66488 1.21078 1.32315 1.09493 1.18569 0.91382 0.87558 0.89671 1.20743 1.13553 1.00098 1.16482 0.90215 1.27817 0.90761 1.02332 0.96821 1.70659 1.19957 1.37273 1.15078 0.81792 0.73660 0.69706 0.75717 1.26829 1.20717 1.22187 1.21689 1.00700 1.00644 1.03547 0.92903 0.88292 0.93103 0.85402 0.89618 0.93898 0.89810 0.89783 0.84307 0.89738 0.89791 0.93569 0.89140 0.85699 0.85048 0.87875 0.85535 0.90734 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.29 -4.77 8.89 -19.14 -0.17 -4.94 16 3 C 0.16 2.67 6.61 -38.88 -0.26 2.41 16 4 C -0.23 -3.13 8.16 -39.29 -0.32 -3.45 16 5 C 0.14 1.75 5.64 -83.81 -0.47 1.28 16 6 N -0.48 -5.04 4.75 -170.95 -0.81 -5.85 16 7 C 0.02 0.17 5.37 -3.76 -0.02 0.14 16 8 C 0.06 0.40 6.72 -3.76 -0.03 0.37 16 9 N -0.69 -4.83 6.91 -113.63 -0.79 -5.62 16 10 C 0.06 0.41 6.72 -3.77 -0.03 0.38 16 11 C 0.01 0.10 4.28 -3.76 -0.02 0.09 16 12 C -0.21 -2.77 8.79 -39.41 -0.35 -3.12 16 13 C -0.04 -0.71 9.53 -39.30 -0.37 -1.09 16 14 C -0.08 -1.44 5.53 -104.73 -0.58 -2.02 16 15 C 0.03 0.59 5.28 -104.65 -0.55 0.04 16 16 C -0.28 -6.04 8.91 -38.80 -0.35 -6.38 16 17 C 0.15 3.33 11.16 -17.62 -0.20 3.13 16 18 N -0.57 -14.95 4.54 -11.22 -0.05 -15.00 16 19 C 0.25 6.71 6.39 -85.02 -0.54 6.17 16 20 C -0.48 -13.31 9.58 -37.70 -0.36 -13.67 16 21 H 0.08 2.21 8.05 -52.48 -0.42 1.79 16 22 C 0.04 1.21 5.52 -17.35 -0.10 1.11 16 23 N -0.81 -22.51 13.65 55.55 0.76 -21.76 16 24 Si 1.16 29.20 25.56 -169.99 -4.34 24.85 16 25 H -0.33 -8.32 7.11 56.52 0.40 -7.92 16 26 H -0.28 -7.00 6.67 56.52 0.38 -6.62 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C -0.24 -5.85 9.36 -38.32 -0.36 -6.21 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 32 H 0.13 1.46 5.40 -52.49 -0.28 1.18 16 33 H 0.09 0.70 6.80 -51.93 -0.35 0.35 16 34 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.34 2.06 8.89 -39.29 -0.35 1.71 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.39 7.58 -51.93 -0.39 0.00 16 41 H 0.09 0.79 7.15 -51.93 -0.37 0.42 16 42 H 0.13 1.40 5.78 -52.49 -0.30 1.09 16 43 H 0.13 2.03 8.05 -52.48 -0.42 1.61 16 44 H 0.10 2.00 7.75 -52.49 -0.41 1.60 16 45 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 46 H 0.28 7.50 8.72 -40.82 -0.36 7.14 16 47 H 0.10 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -31.46 373.01 -10.34 -41.81 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.66 Total: 0.42 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.90 Total: -19.53 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.89 Total: -48.22 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.17 Total: -4.94 kcal Atomic # 14 Polarization: 29.20 SS G_CDS: -4.34 Total: 24.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.46 -10.34 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244291170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.189 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds