Wall clock time and date at job start Sat Apr 11 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35808 * 117.00365 * 2 1 4 4 C 1.38410 * 120.08249 * 0.02562 * 3 2 1 5 5 C 1.38868 * 119.99101 * 179.97438 * 4 3 2 6 6 N 1.39474 * 119.91987 * 179.97438 * 5 4 3 7 7 C 1.46958 * 110.99864 * 56.19717 * 6 5 4 8 8 C 1.53054 * 109.36323 * 183.19128 * 7 6 5 9 9 N 1.46964 * 109.36495 * 301.59741 * 8 7 6 10 10 C 1.46951 * 110.87751 * 59.32011 * 9 8 7 11 11 C 1.46964 * 111.00289 * 179.97438 * 6 5 4 12 12 C 1.39151 * 120.16498 * 0.02562 * 5 4 3 13 13 C 1.37785 * 120.16371 * 359.70803 * 12 5 4 14 14 C 1.39429 * 120.00538 * 0.54857 * 13 12 5 15 15 C 1.48199 * 120.07811 * 179.74915 * 14 13 12 16 16 C 1.40130 * 120.82843 * 129.72660 * 15 14 13 17 17 C 1.38427 * 119.41647 * 179.97438 * 16 15 14 18 18 N 1.31517 * 121.15897 * 0.02562 * 17 16 15 19 19 C 1.33677 * 121.81206 * 359.97438 * 18 17 16 20 20 C 1.41435 * 119.77515 * 179.97438 * 19 18 17 21 21 H 1.08007 * 119.99664 * 187.07484 * 20 19 18 22 22 C 1.40021 * 120.00323 * 7.07603 * 20 19 18 23 23 N 1.30742 * 120.00414 * 182.55358 * 22 20 19 24 24 Si 1.86807 * 119.99952 * 2.55173 * 22 20 19 25 25 H 1.48500 * 109.47039 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.46811 * 300.00180 * 24 22 20 27 27 H 1.48498 * 109.46871 * 59.99628 * 24 22 20 28 28 C 1.39425 * 120.83008 * 309.99342 * 15 14 13 29 29 H 1.09005 * 109.46844 * 60.00009 * 1 2 3 30 30 H 1.08995 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47720 * 300.00940 * 1 2 3 32 32 H 1.07997 * 120.00090 * 359.95060 * 4 3 2 33 33 H 1.08996 * 109.48769 * 303.15426 * 7 6 5 34 34 H 1.08998 * 109.48913 * 63.22654 * 7 6 5 35 35 H 1.08995 * 109.48984 * 181.63247 * 8 7 6 36 36 H 1.08995 * 109.50884 * 61.57520 * 8 7 6 37 37 H 1.00904 * 110.99663 * 295.46008 * 9 8 7 38 38 H 1.09003 * 109.48780 * 180.71291 * 10 9 8 39 39 H 1.09001 * 109.50943 * 60.65761 * 10 9 8 40 40 H 1.09003 * 109.48585 * 296.77789 * 11 6 5 41 41 H 1.09000 * 109.48403 * 56.82040 * 11 6 5 42 42 H 1.08002 * 119.92251 * 179.97438 * 12 5 4 43 43 H 1.08004 * 119.99852 * 180.27564 * 13 12 5 44 44 H 1.08002 * 120.28927 * 0.02562 * 16 15 14 45 45 H 1.07998 * 119.42021 * 179.97438 * 17 16 15 46 46 H 0.97000 * 119.99771 * 354.84485 * 23 22 20 47 47 H 1.08003 * 120.58820 * 0.02739 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2100 0.0000 4 6 1.2935 2.3720 0.0005 5 6 1.9260 3.6082 0.0011 6 7 1.1667 4.7781 0.0011 7 6 0.2393 4.8041 1.1408 8 6 -0.6285 6.0623 1.0604 9 7 0.2356 7.2510 1.0611 10 6 1.1630 7.2251 -0.0786 11 6 2.0308 5.9669 0.0023 12 6 3.3155 3.6827 0.0005 13 6 4.0707 2.5303 0.0055 14 6 3.4429 1.2853 -0.0004 15 6 4.2536 0.0447 -0.0006 16 6 3.9989 -0.9797 0.9210 17 6 4.7739 -2.1264 0.8943 18 7 5.7453 -2.2710 0.0195 19 6 6.0295 -1.3246 -0.8808 20 6 7.0842 -1.5251 -1.8015 21 1 7.3921 -0.7210 -2.4535 22 6 7.7293 -2.7661 -1.8679 23 7 8.7368 -2.9365 -2.6834 24 14 7.1503 -4.1785 -0.7909 25 1 7.9926 -5.3742 -1.0477 26 1 7.2647 -3.7905 0.6379 27 1 5.7338 -4.4931 -1.1065 28 6 5.2922 -0.1300 -0.9143 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 0.2149 2.3171 0.0001 33 1 -0.3980 3.9203 1.1112 34 1 0.8069 4.8126 2.0713 35 1 -1.2972 6.0983 1.9204 36 1 -1.2166 6.0408 0.1430 37 1 0.7366 7.3334 1.9331 38 1 1.8003 8.1089 -0.0490 39 1 0.5957 7.2167 -1.0093 40 1 2.6183 5.9884 0.9201 41 1 2.7001 5.9308 -0.8573 42 1 3.8034 4.6463 0.0005 43 1 5.1490 2.5912 0.0096 44 1 3.2045 -0.8758 1.6452 45 1 4.5780 -2.9158 1.6048 46 1 8.9901 -2.2282 -3.2959 47 1 5.5229 0.6381 -1.6375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244291170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:21 Heat of formation + Delta-G solvation = 3.528436 kcal Electronic energy + Delta-G solvation = -28853.464945 eV Core-core repulsion = 24999.850178 eV Total energy + Delta-G solvation = -3853.614767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.81434 -40.59858 -40.02014 -38.16147 -36.00891 -35.45054 -33.32365 -32.48027 -32.27710 -31.03311 -29.91588 -28.15445 -27.38094 -26.51295 -24.94493 -24.13144 -23.19721 -22.44613 -22.29425 -21.36397 -20.23994 -19.21548 -17.66552 -17.54417 -17.17942 -16.89000 -16.68061 -16.48071 -16.20145 -16.01559 -15.83984 -15.59591 -15.43813 -15.13734 -14.73809 -14.71378 -14.45390 -14.42155 -14.05802 -13.98950 -13.54125 -13.34266 -13.05969 -12.77008 -12.58544 -12.53103 -12.43854 -12.36546 -12.16343 -12.04569 -11.84752 -11.82429 -11.60216 -11.30818 -10.91285 -10.20872 -9.87342 -9.64341 -9.49089 -9.45686 -9.23283 -8.68398 -6.81480 -0.02182 0.37405 0.70503 0.89885 1.61757 1.73522 2.07479 2.31558 2.45563 2.50295 2.65354 2.77971 3.28203 3.54750 3.71224 3.73391 3.90361 3.96897 3.99044 4.02755 4.09234 4.12945 4.19814 4.27688 4.36826 4.39785 4.49569 4.55786 4.57105 4.60396 4.64744 4.68901 4.73090 4.73761 4.75882 4.92542 4.98882 5.05983 5.13018 5.24643 5.34645 5.36093 5.41131 5.54565 5.68337 5.82756 5.89017 5.96048 6.02858 6.07120 6.36950 6.39508 6.46793 6.66707 7.58543 7.96831 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021491 B = 0.002605 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.546719 B =10744.903454 C =11640.236902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.162 3.838 4 C -0.228 4.228 5 C 0.150 3.850 6 N -0.489 5.489 7 C 0.020 3.980 8 C 0.063 3.937 9 N -0.691 5.691 10 C 0.064 3.936 11 C 0.010 3.990 12 C -0.207 4.207 13 C -0.047 4.047 14 C -0.125 4.125 15 C 0.040 3.960 16 C -0.262 4.262 17 C 0.131 3.869 18 N -0.595 5.595 19 C 0.238 3.762 20 C -0.515 4.515 21 H 0.061 0.939 22 C 0.015 3.985 23 N -0.834 5.834 24 Si 1.191 2.809 25 H -0.331 1.331 26 H -0.277 1.277 27 H -0.297 1.297 28 C -0.264 4.264 29 H 0.062 0.938 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.347 0.653 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.148 0.852 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.164 0.836 46 H 0.279 0.721 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.088 18.619 9.445 29.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.116 3.884 4 C -0.249 4.249 5 C 0.051 3.949 6 N -0.204 5.204 7 C -0.107 4.107 8 C -0.067 4.067 9 N -0.319 5.319 10 C -0.066 4.066 11 C -0.119 4.119 12 C -0.228 4.228 13 C -0.066 4.066 14 C -0.127 4.127 15 C 0.034 3.966 16 C -0.285 4.285 17 C -0.027 4.027 18 N -0.314 5.314 19 C 0.114 3.886 20 C -0.547 4.547 21 H 0.079 0.921 22 C -0.201 4.201 23 N -0.457 5.457 24 Si 1.024 2.976 25 H -0.265 1.265 26 H -0.204 1.204 27 H -0.225 1.225 28 C -0.286 4.286 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.165 0.835 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.181 0.819 46 H 0.089 0.911 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.930 16.759 9.008 28.286 hybrid contribution 0.740 1.661 -0.305 1.844 sum -20.190 18.420 8.703 28.682 Atomic orbital electron populations 1.23361 0.76576 1.05433 1.02308 1.86205 1.23303 1.26426 1.87852 1.18840 0.90654 0.84943 0.94011 1.20783 1.00626 0.89880 1.13622 1.18803 0.91108 0.90401 0.94566 1.59150 1.18839 1.00652 1.41782 1.23088 0.95347 1.02489 0.89762 1.22171 0.95035 0.85348 1.04116 1.60724 1.24795 1.39814 1.06582 1.22145 0.94012 0.95349 0.95123 1.23147 0.95925 0.90396 1.02405 1.21250 0.92839 0.98923 1.09747 1.20983 0.99981 0.90457 0.95217 1.18260 0.90364 0.93013 1.11039 1.18811 0.92018 0.92835 0.92932 1.21513 1.05853 0.96128 1.04978 1.22669 0.89228 0.96488 0.94326 1.66440 1.22440 1.32482 1.10085 1.18682 0.91437 0.88762 0.89713 1.20700 1.15723 1.00119 1.18193 0.92072 1.28555 0.90694 1.03563 0.97267 1.70677 1.21194 1.37427 1.16421 0.81332 0.73038 0.68338 0.74921 1.26473 1.20435 1.22534 1.21739 1.02023 1.00065 1.04776 0.91952 0.86799 0.90940 0.82976 0.89084 0.93895 0.87968 0.90336 0.83498 0.88128 0.90548 0.93078 0.89421 0.83491 0.85643 0.85188 0.81910 0.91085 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.33 -9.77 8.89 -91.40 -0.81 -10.58 16 3 C 0.16 4.99 6.61 22.72 0.15 5.14 16 4 C -0.23 -5.51 8.16 22.46 0.18 -5.33 16 5 C 0.15 3.44 5.64 38.30 0.22 3.66 16 6 N -0.49 -8.57 4.75 -694.76 -3.30 -11.87 16 7 C 0.02 0.26 5.37 86.31 0.46 0.72 16 8 C 0.06 0.64 6.72 86.31 0.58 1.22 16 9 N -0.69 -7.41 6.91 -513.43 -3.55 -10.96 16 10 C 0.06 0.71 6.72 86.31 0.58 1.29 16 11 C 0.01 0.14 4.28 86.31 0.37 0.51 16 12 C -0.21 -5.14 8.79 22.38 0.20 -4.94 16 13 C -0.05 -1.48 9.53 22.45 0.21 -1.27 16 14 C -0.13 -4.47 5.53 -19.93 -0.11 -4.58 16 15 C 0.04 1.74 5.28 -19.88 -0.11 1.63 16 16 C -0.26 -10.76 8.91 22.77 0.20 -10.56 16 17 C 0.13 5.74 11.16 84.79 0.95 6.69 16 18 N -0.59 -30.99 4.54 -189.42 -0.86 -31.85 16 19 C 0.24 13.13 6.39 40.18 0.26 13.39 16 20 C -0.51 -30.29 9.58 23.49 0.23 -30.07 16 21 H 0.06 3.67 8.05 -2.91 -0.02 3.65 16 22 C 0.01 0.86 5.52 85.29 0.47 1.33 16 23 N -0.83 -48.55 13.65 21.84 0.30 -48.26 16 24 Si 1.19 60.47 25.56 68.60 1.75 62.23 16 25 H -0.33 -16.35 7.11 99.48 0.71 -15.64 16 26 H -0.28 -13.74 6.67 99.48 0.66 -13.08 16 27 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 28 C -0.26 -13.08 9.36 23.09 0.22 -12.86 16 29 H 0.06 1.01 7.66 -2.38 -0.02 1.00 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.15 2.86 5.40 -2.91 -0.02 2.84 16 33 H 0.09 1.12 6.80 -2.39 -0.02 1.10 16 34 H 0.04 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.35 3.01 8.89 -89.69 -0.80 2.21 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 0.70 7.58 -2.39 -0.02 0.68 16 41 H 0.09 1.30 7.15 -2.39 -0.02 1.28 16 42 H 0.15 2.92 5.78 -2.91 -0.02 2.91 16 43 H 0.13 3.93 8.05 -2.91 -0.02 3.91 16 44 H 0.13 4.64 7.75 -2.91 -0.02 4.62 16 45 H 0.16 5.81 8.06 -2.91 -0.02 5.79 16 46 H 0.28 15.73 8.72 -92.71 -0.81 14.92 16 47 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -70.32 373.01 -0.18 -70.50 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.12 Total: 13.38 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 6.17 Total: -32.59 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -7.41 Total: -102.94 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.81 Total: -10.58 kcal Atomic # 14 Polarization: 60.47 SS G_CDS: 1.75 Total: 62.23 kcal Total: -70.32 -0.18 -70.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244291170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.026 kcal (2) G-P(sol) polarization free energy of solvation -70.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds