Wall clock time and date at job start Sat Apr 11 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46504 * 120.00098 * 2 1 4 4 C 1.52996 * 109.47125 * 83.88910 * 3 2 1 5 5 H 1.08997 * 112.78731 * 282.85409 * 4 3 2 6 6 C 1.53513 * 113.47214 * 152.04324 * 4 3 2 7 7 C 1.53513 * 83.57477 * 219.20972 * 6 4 3 8 8 N 1.47481 * 113.47300 * 53.66605 * 4 3 2 9 9 C 1.46900 * 111.00112 * 253.46492 * 8 4 3 10 10 C 1.50695 * 109.47275 * 197.04366 * 9 8 4 11 11 O 1.21293 * 119.99970 * 353.18240 * 10 9 8 12 12 N 1.34777 * 119.99900 * 173.18527 * 10 9 8 13 13 C 1.37099 * 120.00084 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00101 * 359.97438 * 13 12 10 15 15 C 1.38953 * 120.00052 * 180.02562 * 13 12 10 16 16 N 1.31405 * 120.00074 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99950 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47350 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.47269 * 59.99524 * 17 15 13 20 20 H 1.48508 * 109.46909 * 300.00085 * 17 15 13 21 21 C 1.34775 * 120.00244 * 179.97438 * 2 1 3 22 22 O 1.21279 * 120.00208 * 185.06864 * 21 2 1 23 23 C 1.50696 * 119.99971 * 5.07375 * 21 2 1 24 24 H 1.08999 * 110.49238 * 38.86902 * 23 21 2 25 25 C 1.54111 * 110.54887 * 276.17205 * 23 21 2 26 26 N 1.47056 * 103.86224 * 241.40480 * 25 23 21 27 27 C 1.33952 * 109.17826 * 359.97438 * 26 25 23 28 28 O 1.21587 * 123.04152 * 179.97438 * 27 26 25 29 29 N 1.33940 * 113.91791 * 0.02562 * 27 26 25 30 30 H 1.09003 * 109.47399 * 90.00567 * 1 2 3 31 31 H 1.08998 * 109.47239 * 209.99801 * 1 2 3 32 32 H 1.08996 * 109.46984 * 330.00016 * 1 2 3 33 33 H 1.09004 * 109.46814 * 323.89249 * 3 2 1 34 34 H 1.09006 * 109.47100 * 203.89465 * 3 2 1 35 35 H 1.09001 * 114.16834 * 105.57048 * 6 4 3 36 36 H 1.09000 * 114.17570 * 332.85863 * 6 4 3 37 37 H 1.09002 * 113.48009 * 271.26147 * 7 6 4 38 38 H 1.08997 * 113.47419 * 140.79273 * 7 6 4 39 39 H 1.09001 * 109.46777 * 77.03832 * 9 8 4 40 40 H 1.09005 * 109.47110 * 317.04327 * 9 8 4 41 41 H 0.97002 * 120.00175 * 0.02562 * 12 10 9 42 42 H 0.97008 * 119.99860 * 0.02562 * 16 15 13 43 43 H 1.09001 * 110.54527 * 359.97438 * 25 23 21 44 44 H 1.08996 * 110.55192 * 122.81111 * 25 23 21 45 45 H 0.96992 * 125.41220 * 179.97438 * 26 25 23 46 46 H 0.97000 * 125.41396 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3195 1.7872 1.4343 5 1 1.3973 2.2388 1.7998 6 6 3.5613 2.6596 1.6655 7 6 3.6164 1.9224 3.0109 8 7 2.9023 0.8042 2.3666 9 6 1.8747 0.2518 3.2593 10 6 2.5376 -0.4063 4.4418 11 8 3.7444 -0.5243 4.4725 12 7 1.7895 -0.8640 5.4652 13 6 2.3926 -1.4633 6.5407 14 1 3.4670 -1.5690 6.5678 15 6 1.6212 -1.9357 7.5956 16 7 0.3139 -1.8075 7.5625 17 14 2.4430 -2.7516 9.0614 18 1 1.4079 -3.1637 10.0431 19 1 3.3781 -1.7922 9.7021 20 1 3.1965 -3.9469 8.6044 21 6 2.1389 -1.1672 0.0005 22 8 3.3481 -1.1692 0.0933 23 6 1.3899 -2.4697 -0.1143 24 1 0.5622 -2.3733 -0.8170 25 6 0.8770 -2.9224 1.2667 26 7 1.5492 -4.2117 1.4869 27 6 2.3263 -4.4887 0.4316 28 8 2.9989 -5.4983 0.3503 29 7 2.2962 -3.5523 -0.5257 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6601 1.9985 -0.6056 34 1 3.1929 1.1136 -0.4163 35 1 3.3486 3.7254 1.7491 36 1 4.3945 2.4357 0.9994 37 1 3.0402 2.4100 3.7972 38 1 4.6285 1.6676 3.3252 39 1 1.2817 -0.4855 2.7182 40 1 1.2257 1.0555 3.6074 41 1 0.8244 -0.7701 5.4404 42 1 -0.1128 -1.3835 6.8015 43 1 1.1646 -2.2052 2.0354 44 1 -0.2049 -3.0532 1.2490 45 1 1.4463 -4.7724 2.2716 46 1 2.7929 -3.5834 -1.3583 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263810525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:33 Heat of formation + Delta-G solvation = -62.841295 kcal Electronic energy + Delta-G solvation = -31639.462816 eV Core-core repulsion = 27372.120778 eV Total energy + Delta-G solvation = -4267.342038 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.47496 -41.58596 -40.24061 -39.58219 -37.42498 -36.50634 -36.30915 -34.07988 -33.28732 -32.20304 -30.98573 -29.24715 -27.44234 -27.30953 -25.40132 -25.17052 -23.78815 -22.89502 -21.56218 -20.80577 -20.40120 -19.99888 -18.99363 -18.46501 -18.15520 -17.56676 -17.34466 -17.08252 -16.97051 -16.40722 -16.26575 -16.00438 -15.60741 -15.52092 -15.44474 -15.10911 -15.02531 -14.53885 -14.25247 -14.05740 -13.87679 -13.67605 -13.40601 -13.24906 -13.08250 -12.99810 -12.83434 -12.53478 -12.36154 -11.97862 -11.95554 -11.89925 -11.65538 -11.61286 -11.50677 -11.22606 -10.58000 -10.42516 -10.12456 -9.86032 -9.81160 -9.39411 -8.94238 -6.07904 1.46246 1.48615 1.51494 1.65507 1.78644 1.95787 1.97770 2.12626 2.36673 2.78749 2.98357 3.12769 3.17873 3.24914 3.46063 3.54004 3.80846 3.86231 3.97686 4.15626 4.18910 4.22101 4.26476 4.35902 4.38385 4.45021 4.53252 4.59397 4.69693 4.79946 4.84524 4.95025 5.00739 5.07663 5.22359 5.37531 5.58670 5.68412 5.82526 5.94437 6.08571 6.10774 6.21640 6.45851 6.56370 6.73911 7.25382 7.41162 7.43890 7.92980 8.53799 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.004612 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.577010 B = 6069.688830 C = 8044.335607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.604 5.604 3 C 0.137 3.863 4 C 0.011 3.989 5 H 0.105 0.895 6 C -0.116 4.116 7 C -0.001 4.001 8 N -0.454 5.454 9 C 0.031 3.969 10 C 0.440 3.560 11 O -0.617 6.617 12 N -0.582 5.582 13 C -0.409 4.409 14 H 0.062 0.938 15 C -0.034 4.034 16 N -0.911 5.911 17 Si 1.127 2.873 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.495 3.505 22 O -0.553 6.553 23 C 0.109 3.891 24 H 0.168 0.832 25 C 0.098 3.902 26 N -0.735 5.735 27 C 0.696 3.304 28 O -0.640 6.640 29 N -0.710 5.710 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.385 0.615 42 H 0.261 0.739 43 H 0.063 0.937 44 H 0.146 0.854 45 H 0.434 0.566 46 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.471 10.362 -19.483 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.337 5.337 3 C 0.014 3.986 4 C -0.099 4.099 5 H 0.122 0.878 6 C -0.154 4.154 7 C -0.131 4.131 8 N -0.177 5.177 9 C -0.100 4.100 10 C 0.227 3.773 11 O -0.502 6.502 12 N -0.222 5.222 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.233 4.233 16 N -0.550 5.550 17 Si 0.947 3.053 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.205 1.205 21 C 0.280 3.720 22 O -0.429 6.429 23 C 0.000 4.000 24 H 0.185 0.815 25 C -0.026 4.026 26 N -0.397 5.397 27 C 0.394 3.606 28 O -0.522 6.522 29 N -0.371 5.371 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.219 0.781 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.163 0.837 45 H 0.276 0.724 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -9.681 8.472 -18.215 22.300 hybrid contribution 0.109 0.959 -0.533 1.102 sum -9.572 9.431 -18.748 23.067 Atomic orbital electron populations 1.22273 0.76626 1.04949 1.04370 1.47742 1.08376 1.04746 1.72885 1.21532 0.98015 0.84829 0.94263 1.24070 0.98232 0.92082 0.95477 0.87762 1.23095 0.97674 0.99747 0.94885 1.23564 0.99659 0.92252 0.97609 1.68995 1.16787 1.21403 1.10509 1.22368 0.94906 1.00360 0.92410 1.20869 0.87601 0.83551 0.85242 1.90543 1.16679 1.61817 1.81160 1.41918 1.08643 1.53848 1.17776 1.20396 0.94534 1.39332 0.99580 0.91953 1.27596 0.95421 0.97257 1.03071 1.70976 1.09175 1.42308 1.32510 0.82702 0.74521 0.75879 0.72157 1.19153 1.20156 1.20490 1.21070 0.87890 0.86321 0.76677 1.90798 1.16428 1.87201 1.48485 1.22231 0.93518 0.85533 0.98735 0.81535 1.22637 1.00785 0.84816 0.94372 1.45112 1.48936 1.24476 1.21136 1.16169 0.79806 0.83078 0.81514 1.90932 1.48788 1.30806 1.81663 1.44760 1.50609 1.20149 1.21586 0.89235 0.90193 0.88985 0.85814 0.91833 0.87368 0.89591 0.91991 0.93747 0.87970 0.90541 0.78061 0.92792 0.91844 0.83673 0.72383 0.72164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 9.88 127.77 1.26 1.51 16 2 N -0.60 -8.84 2.75 -846.77 -2.33 -11.16 16 3 C 0.14 2.09 5.60 86.38 0.48 2.57 16 4 C 0.01 0.22 3.37 42.19 0.14 0.36 16 5 H 0.10 1.41 7.65 -2.39 -0.02 1.40 16 6 C -0.12 -2.36 8.00 30.94 0.25 -2.11 16 7 C 0.00 -0.05 6.43 83.57 0.54 0.49 16 8 N -0.45 -14.47 5.37 -906.71 -4.87 -19.34 16 9 C 0.03 1.02 5.42 85.56 0.46 1.48 16 10 C 0.44 21.12 7.47 87.66 0.65 21.78 16 11 O -0.62 -36.48 15.11 -3.07 -0.05 -36.53 16 12 N -0.58 -29.07 5.28 -306.98 -1.62 -30.69 16 13 C -0.41 -23.54 9.68 84.04 0.81 -22.73 16 14 H 0.06 3.98 7.16 -2.91 -0.02 3.96 16 15 C -0.03 -1.85 5.50 84.93 0.47 -1.38 16 16 N -0.91 -49.17 13.68 21.66 0.30 -48.87 16 17 Si 1.13 49.22 29.92 68.60 2.05 51.27 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 C 0.50 11.49 6.47 87.66 0.57 12.06 16 22 O -0.55 -20.01 16.00 -3.02 -0.05 -20.06 16 23 C 0.11 1.91 3.20 44.51 0.14 2.05 16 24 H 0.17 1.08 7.42 -2.39 -0.02 1.06 16 25 C 0.10 1.88 6.56 86.65 0.57 2.45 16 26 N -0.74 -20.40 6.37 -477.33 -3.04 -23.44 16 27 C 0.70 23.22 8.92 179.57 1.60 24.82 16 28 O -0.64 -27.54 18.05 -3.99 -0.07 -27.61 16 29 N -0.71 -17.84 5.63 -460.34 -2.59 -20.43 16 30 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.08 0.20 5.88 -2.39 -0.01 0.19 16 32 H 0.09 0.17 8.07 -2.39 -0.02 0.15 16 33 H 0.12 0.80 8.12 -2.38 -0.02 0.78 16 34 H 0.06 1.39 7.03 -2.38 -0.02 1.37 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.91 7.92 -2.39 -0.02 1.89 16 37 H 0.06 1.91 7.82 -2.39 -0.02 1.89 16 38 H 0.04 1.78 8.02 -2.39 -0.02 1.76 16 39 H 0.10 2.87 6.08 -2.39 -0.01 2.86 16 40 H 0.08 2.05 7.56 -2.38 -0.02 2.03 16 41 H 0.39 17.10 6.73 -92.71 -0.62 16.48 16 42 H 0.26 13.40 6.78 -92.70 -0.63 12.77 16 43 H 0.06 1.56 5.67 -2.39 -0.01 1.55 16 44 H 0.15 1.28 8.05 -2.39 -0.02 1.26 16 45 H 0.43 11.92 8.96 -92.71 -0.83 11.09 16 46 H 0.44 9.98 8.96 -92.71 -0.83 9.15 16 Total: -1.00 -97.64 376.15 -5.40 -103.04 By element: Atomic # 1 Polarization: 41.56 SS G_CDS: -1.08 Total: 40.48 kcal Atomic # 6 Polarization: 35.40 SS G_CDS: 7.95 Total: 43.35 kcal Atomic # 7 Polarization: -139.79 SS G_CDS: -14.15 Total: -153.94 kcal Atomic # 8 Polarization: -84.04 SS G_CDS: -0.17 Total: -84.20 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -97.64 -5.40 -103.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263810525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.196 kcal (2) G-P(sol) polarization free energy of solvation -97.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds