Wall clock time and date at job start Sat Apr 11 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00104 * 2 1 4 4 C 1.53001 * 109.47243 * 277.52709 * 3 2 1 5 5 H 1.09004 * 112.96237 * 52.23317 * 4 3 2 6 6 C 1.53940 * 113.77323 * 183.91647 * 4 3 2 7 7 C 1.53947 * 86.29133 * 137.90719 * 6 4 3 8 8 N 1.47578 * 86.11525 * 336.39370 * 7 6 4 9 9 C 1.36941 * 134.48908 * 204.64080 * 8 7 6 10 10 H 1.08002 * 119.99814 * 57.62109 * 9 8 7 11 11 C 1.38814 * 119.99981 * 237.61425 * 9 8 7 12 12 N 1.31614 * 120.00005 * 192.26666 * 11 9 8 13 13 Si 1.86800 * 119.99924 * 12.26970 * 11 9 8 14 14 H 1.48501 * 109.47181 * 90.27345 * 13 11 9 15 15 H 1.48499 * 109.46950 * 210.27503 * 13 11 9 16 16 H 1.48501 * 109.46784 * 330.27759 * 13 11 9 17 17 C 1.34780 * 120.00009 * 179.97438 * 2 1 3 18 18 O 1.21277 * 119.99749 * 175.19087 * 17 2 1 19 19 C 1.50699 * 120.00167 * 355.18406 * 17 2 1 20 20 C 1.52995 * 109.47057 * 180.02562 * 19 17 2 21 21 C 1.53003 * 109.46807 * 180.02562 * 20 19 17 22 22 N 1.46499 * 109.47144 * 179.97438 * 21 20 19 23 23 C 1.36370 * 125.96338 * 89.99987 * 22 21 20 24 24 O 1.35630 * 125.99101 * 359.97438 * 23 22 21 25 25 N 1.30904 * 108.02293 * 179.73946 * 23 22 21 26 26 N 1.40111 * 107.94050 * 0.24094 * 25 23 22 27 27 C 1.30900 * 107.94024 * 0.02562 * 26 25 23 28 28 O 1.35634 * 125.98893 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47475 * 270.00357 * 1 2 3 30 30 H 1.09003 * 109.47127 * 30.00921 * 1 2 3 31 31 H 1.09002 * 109.46999 * 149.99877 * 1 2 3 32 32 H 1.09001 * 109.47329 * 37.52601 * 3 2 1 33 33 H 1.09000 * 109.47706 * 157.52855 * 3 2 1 34 34 H 1.09006 * 113.74082 * 252.25244 * 6 4 3 35 35 H 1.08991 * 113.74585 * 23.45459 * 6 4 3 36 36 H 1.09000 * 113.77033 * 90.69105 * 7 6 4 37 37 H 1.09004 * 113.76840 * 221.97429 * 7 6 4 38 38 H 0.96996 * 119.99917 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46986 * 59.99606 * 19 17 2 40 40 H 1.09002 * 109.46812 * 300.00602 * 19 17 2 41 41 H 1.08998 * 109.47125 * 60.00213 * 20 19 17 42 42 H 1.09002 * 109.47090 * 299.99748 * 20 19 17 43 43 H 1.08998 * 109.47258 * 60.00106 * 21 20 19 44 44 H 1.09002 * 109.46936 * 299.99654 * 21 20 19 45 45 H 0.96694 * 114.00535 * 269.72096 * 24 23 22 46 46 H 0.96702 * 114.00121 * 89.97214 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2888 1.8048 -1.4301 5 1 1.3200 1.8587 -1.9268 6 6 3.1242 3.0915 -1.5582 7 6 3.7183 2.4599 -2.8303 8 7 3.3405 1.1608 -2.2407 9 6 3.7867 -0.1255 -2.3871 10 1 4.8225 -0.3631 -2.1941 11 6 2.9078 -1.1242 -2.7835 12 7 3.2638 -2.3880 -2.6934 13 14 1.2197 -0.6742 -3.4449 14 1 1.2940 -0.5067 -4.9185 15 1 0.2556 -1.7552 -3.1174 16 1 0.7678 0.5970 -2.8243 17 6 2.1389 -1.1672 0.0005 18 8 3.3484 -1.1691 -0.0875 19 6 1.3894 -2.4700 0.1107 20 6 2.3828 -3.6333 0.0884 21 6 1.6218 -4.9560 0.1996 22 7 2.5730 -6.0700 0.1776 23 6 3.1728 -6.6325 1.2655 24 8 2.9937 -6.2583 2.5568 25 7 3.9479 -7.6002 0.8454 26 7 3.8480 -7.6580 -0.5509 27 6 3.0157 -6.7233 -0.9346 28 8 2.6522 -6.4558 -2.2137 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6733 1.9909 0.6260 33 1 3.2015 1.1086 0.3928 34 1 2.5286 3.9843 -1.7486 35 1 3.8478 3.2269 -0.7544 36 1 3.1703 2.7055 -3.7399 37 1 4.7943 2.6028 -2.9304 38 1 2.6498 -3.0858 -2.9707 39 1 0.6997 -2.5644 -0.7281 40 1 0.8291 -2.4889 1.0455 41 1 3.0721 -3.5386 0.9274 42 1 2.9434 -3.6145 -0.8463 43 1 0.9328 -5.0504 -0.6397 44 1 1.0610 -4.9750 1.1340 45 1 3.6135 -5.5807 2.8596 46 1 1.8750 -6.9474 -2.5127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264364962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:59 Heat of formation + Delta-G solvation = 57.448961 kcal Electronic energy + Delta-G solvation = -31713.907361 eV Core-core repulsion = 27451.781501 eV Total energy + Delta-G solvation = -4262.125861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11950 -39.32519 -38.07811 -37.73710 -36.98275 -35.45412 -34.56721 -32.30284 -31.97858 -29.45644 -28.96296 -28.17980 -26.81381 -25.72277 -23.14548 -22.85634 -22.63438 -21.93178 -21.32002 -19.35489 -18.81179 -18.62166 -18.28186 -16.78669 -16.55892 -16.52592 -15.90754 -15.63323 -15.44081 -15.27090 -14.94337 -14.53214 -13.92268 -13.62017 -13.45468 -13.13477 -12.87120 -12.79268 -12.54815 -12.38969 -12.25828 -12.20444 -12.05048 -11.83563 -11.65883 -11.42064 -11.36905 -11.06219 -10.87797 -10.75817 -10.57988 -10.34460 -10.18395 -10.06639 -9.83775 -9.79608 -9.49897 -9.31113 -8.71706 -8.27747 -7.76444 -6.33749 -5.88801 -3.50444 1.62612 1.90315 2.33885 3.20522 3.33113 3.35361 3.41021 3.60373 3.76919 3.93708 4.51379 4.55066 4.83817 4.96968 5.16049 5.27648 5.31001 5.31683 5.36476 5.43813 5.49687 5.55209 5.61175 5.62850 5.74609 5.81606 5.82961 5.89936 5.99728 6.09360 6.22237 6.25765 6.29711 6.38134 6.48158 6.60228 6.70818 7.01835 7.09492 7.12791 7.31739 7.42978 7.99684 7.99993 8.20886 8.39209 8.92890 9.27114 9.72543 10.58978 11.24338 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003839 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.396182 B = 7291.944535 C = 7828.641020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.623 5.623 3 C 0.130 3.870 4 C 0.104 3.896 5 H 0.054 0.946 6 C -0.147 4.147 7 C 0.100 3.900 8 N -0.604 5.604 9 C -0.205 4.205 10 H 0.071 0.929 11 C 0.058 3.942 12 N -0.878 5.878 13 Si 0.850 3.150 14 H -0.295 1.295 15 H -0.301 1.301 16 H -0.251 1.251 17 C 0.502 3.498 18 O -0.454 6.454 19 C -0.123 4.123 20 C -0.132 4.132 21 C 0.102 3.898 22 N -0.503 5.503 23 C 0.402 3.598 24 O -0.440 6.440 25 N -0.303 5.303 26 N -0.305 5.305 27 C 0.418 3.582 28 O -0.424 6.424 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.029 0.971 37 H 0.046 0.954 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.130 0.870 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.412 0.588 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.154 0.321 8.280 13.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.360 5.360 3 C 0.006 3.994 4 C -0.002 4.002 5 H 0.071 0.929 6 C -0.186 4.186 7 C -0.024 4.024 8 N -0.332 5.332 9 C -0.333 4.333 10 H 0.088 0.912 11 C -0.144 4.144 12 N -0.518 5.518 13 Si 0.680 3.320 14 H -0.222 1.222 15 H -0.229 1.229 16 H -0.177 1.177 17 C 0.288 3.712 18 O -0.322 6.322 19 C -0.164 4.164 20 C -0.170 4.170 21 C -0.021 4.021 22 N -0.222 5.222 23 C 0.092 3.908 24 O -0.241 6.241 25 N -0.148 5.148 26 N -0.151 5.151 27 C 0.108 3.892 28 O -0.222 6.222 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -8.386 -1.329 8.160 11.776 hybrid contribution -2.564 1.514 -0.734 3.067 sum -10.951 0.185 7.426 13.232 Atomic orbital electron populations 1.21610 0.81751 1.02349 1.00309 1.47564 1.05296 1.06400 1.76773 1.21530 0.97494 0.83698 0.96683 1.23241 0.94265 0.90530 0.92151 0.92879 1.23553 0.99560 0.95939 0.99566 1.22765 0.97943 0.88090 0.93610 1.46091 1.39132 1.02954 1.45014 1.18231 0.96153 0.79716 1.39226 0.91162 1.25906 0.97081 0.95427 0.95990 1.69805 1.35683 0.98563 1.47746 0.87378 0.86174 0.78530 0.79897 1.22233 1.22887 1.17659 1.19917 0.88531 0.84123 0.78646 1.90823 1.13188 1.85887 1.42294 1.21404 0.98910 0.94167 1.01934 1.21941 0.98003 0.89325 1.07771 1.22059 0.90676 0.85229 1.04101 1.47119 1.38407 1.30252 1.06390 1.21241 0.94558 0.93378 0.81608 1.84863 1.60255 1.61882 1.17074 1.78264 1.18006 1.17577 1.00913 1.78316 1.18236 1.17489 1.01013 1.21338 0.95024 0.91397 0.81486 1.85137 1.51362 1.67916 1.17791 0.93562 0.91872 0.92292 0.92552 0.89472 0.93105 0.90557 0.95278 0.93550 0.93350 0.90354 0.90806 0.91859 0.85229 0.89011 0.89038 0.72943 0.73760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 9.73 59.84 0.58 1.73 16 2 N -0.62 -11.04 2.24 -181.58 -0.41 -11.45 16 3 C 0.13 2.30 5.33 -4.04 -0.02 2.28 16 4 C 0.10 2.03 3.25 -66.87 -0.22 1.82 16 5 H 0.05 1.09 5.85 -51.93 -0.30 0.79 16 6 C -0.15 -2.47 7.86 -25.81 -0.20 -2.67 16 7 C 0.10 2.00 8.93 -2.98 -0.03 1.97 16 8 N -0.60 -14.24 2.53 -170.76 -0.43 -14.68 16 9 C -0.20 -5.64 8.12 -15.06 -0.12 -5.77 16 10 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 11 C 0.06 1.55 3.15 -17.43 -0.05 1.50 16 12 N -0.88 -24.21 11.47 55.49 0.64 -23.57 16 13 Si 0.85 20.55 26.22 -169.99 -4.46 16.10 16 14 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 15 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.25 -5.71 4.35 56.52 0.25 -5.46 16 17 C 0.50 9.98 4.89 -10.98 -0.05 9.92 16 18 O -0.45 -11.08 11.72 5.56 0.07 -11.01 16 19 C -0.12 -1.96 4.37 -27.89 -0.12 -2.09 16 20 C -0.13 -2.17 4.83 -26.73 -0.13 -2.30 16 21 C 0.10 1.28 6.01 -4.04 -0.02 1.26 16 22 N -0.50 -7.24 2.76 -120.06 -0.33 -7.57 16 23 C 0.40 5.90 9.15 -88.81 -0.81 5.09 16 24 O -0.44 -4.92 13.58 -18.59 -0.25 -5.17 16 25 N -0.30 -5.25 12.72 29.65 0.38 -4.88 16 26 N -0.31 -5.48 12.72 29.66 0.38 -5.11 16 27 C 0.42 6.65 9.15 -88.81 -0.81 5.84 16 28 O -0.42 -5.98 13.58 -18.60 -0.25 -6.23 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.82 8.07 -51.93 -0.42 0.41 16 31 H 0.06 0.80 6.48 -51.93 -0.34 0.47 16 32 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.09 1.77 7.27 -51.93 -0.38 1.39 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.26 6.77 8.17 -40.82 -0.33 6.44 16 39 H 0.08 1.28 7.26 -51.93 -0.38 0.91 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.13 2.80 5.79 -51.93 -0.30 2.50 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.41 2.81 9.06 45.56 0.41 3.22 16 46 H 0.41 3.11 9.06 45.56 0.41 3.52 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -36.50 369.25 -6.35 -42.85 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.22 Total: 6.57 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: -2.02 Total: 18.59 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: 0.22 Total: -67.25 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.44 Total: -22.41 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.46 Total: 16.10 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.50 -6.35 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264364962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.295 kcal (2) G-P(sol) polarization free energy of solvation -36.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds