Wall clock time and date at job start Sat Apr 11 2020 05:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46494 * 120.00104 * 2 1 4 4 C 1.53001 * 109.47243 * 277.52709 * 3 2 1 5 5 H 1.09004 * 112.96237 * 52.23317 * 4 3 2 6 6 C 1.53940 * 113.77323 * 183.91647 * 4 3 2 7 7 C 1.53947 * 86.29133 * 137.90719 * 6 4 3 8 8 N 1.47578 * 86.11525 * 336.39370 * 7 6 4 9 9 C 1.36941 * 134.48908 * 204.64080 * 8 7 6 10 10 H 1.08002 * 119.99814 * 57.62109 * 9 8 7 11 11 C 1.38814 * 119.99981 * 237.61425 * 9 8 7 12 12 N 1.31614 * 120.00005 * 192.26666 * 11 9 8 13 13 Si 1.86800 * 119.99924 * 12.26970 * 11 9 8 14 14 H 1.48501 * 109.47181 * 90.27345 * 13 11 9 15 15 H 1.48499 * 109.46950 * 210.27503 * 13 11 9 16 16 H 1.48501 * 109.46784 * 330.27759 * 13 11 9 17 17 C 1.34780 * 120.00009 * 179.97438 * 2 1 3 18 18 O 1.21277 * 119.99749 * 175.19087 * 17 2 1 19 19 C 1.50699 * 120.00167 * 355.18406 * 17 2 1 20 20 C 1.52995 * 109.47057 * 180.02562 * 19 17 2 21 21 C 1.53003 * 109.46807 * 180.02562 * 20 19 17 22 22 N 1.46499 * 109.47144 * 179.97438 * 21 20 19 23 23 C 1.36370 * 125.96338 * 89.99987 * 22 21 20 24 24 O 1.35630 * 125.99101 * 359.97438 * 23 22 21 25 25 N 1.30904 * 108.02293 * 179.73946 * 23 22 21 26 26 N 1.40111 * 107.94050 * 0.24094 * 25 23 22 27 27 C 1.30900 * 107.94024 * 0.02562 * 26 25 23 28 28 O 1.35634 * 125.98893 * 180.02562 * 27 26 25 29 29 H 1.08997 * 109.47475 * 270.00357 * 1 2 3 30 30 H 1.09003 * 109.47127 * 30.00921 * 1 2 3 31 31 H 1.09002 * 109.46999 * 149.99877 * 1 2 3 32 32 H 1.09001 * 109.47329 * 37.52601 * 3 2 1 33 33 H 1.09000 * 109.47706 * 157.52855 * 3 2 1 34 34 H 1.09006 * 113.74082 * 252.25244 * 6 4 3 35 35 H 1.08991 * 113.74585 * 23.45459 * 6 4 3 36 36 H 1.09000 * 113.77033 * 90.69105 * 7 6 4 37 37 H 1.09004 * 113.76840 * 221.97429 * 7 6 4 38 38 H 0.96996 * 119.99917 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46986 * 59.99606 * 19 17 2 40 40 H 1.09002 * 109.46812 * 300.00602 * 19 17 2 41 41 H 1.08998 * 109.47125 * 60.00213 * 20 19 17 42 42 H 1.09002 * 109.47090 * 299.99748 * 20 19 17 43 43 H 1.08998 * 109.47258 * 60.00106 * 21 20 19 44 44 H 1.09002 * 109.46936 * 299.99654 * 21 20 19 45 45 H 0.96694 * 114.00535 * 269.72096 * 24 23 22 46 46 H 0.96702 * 114.00121 * 89.97214 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2888 1.8048 -1.4301 5 1 1.3200 1.8587 -1.9268 6 6 3.1242 3.0915 -1.5582 7 6 3.7183 2.4599 -2.8303 8 7 3.3405 1.1608 -2.2407 9 6 3.7867 -0.1255 -2.3871 10 1 4.8225 -0.3631 -2.1941 11 6 2.9078 -1.1242 -2.7835 12 7 3.2638 -2.3880 -2.6934 13 14 1.2197 -0.6742 -3.4449 14 1 1.2940 -0.5067 -4.9185 15 1 0.2556 -1.7552 -3.1174 16 1 0.7678 0.5970 -2.8243 17 6 2.1389 -1.1672 0.0005 18 8 3.3484 -1.1691 -0.0875 19 6 1.3894 -2.4700 0.1107 20 6 2.3828 -3.6333 0.0884 21 6 1.6218 -4.9560 0.1996 22 7 2.5730 -6.0700 0.1776 23 6 3.1728 -6.6325 1.2655 24 8 2.9937 -6.2583 2.5568 25 7 3.9479 -7.6002 0.8454 26 7 3.8480 -7.6580 -0.5509 27 6 3.0157 -6.7233 -0.9346 28 8 2.6522 -6.4558 -2.2137 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6733 1.9909 0.6260 33 1 3.2015 1.1086 0.3928 34 1 2.5286 3.9843 -1.7486 35 1 3.8478 3.2269 -0.7544 36 1 3.1703 2.7055 -3.7399 37 1 4.7943 2.6028 -2.9304 38 1 2.6498 -3.0858 -2.9707 39 1 0.6997 -2.5644 -0.7281 40 1 0.8291 -2.4889 1.0455 41 1 3.0721 -3.5386 0.9274 42 1 2.9434 -3.6145 -0.8463 43 1 0.9328 -5.0504 -0.6397 44 1 1.0610 -4.9750 1.1340 45 1 3.6135 -5.5807 2.8596 46 1 1.8750 -6.9474 -2.5127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264364962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:58 Heat of formation + Delta-G solvation = 23.771879 kcal Electronic energy + Delta-G solvation = -31715.367709 eV Core-core repulsion = 27451.781501 eV Total energy + Delta-G solvation = -4263.586208 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.27583 -40.78842 -39.29533 -39.11396 -38.02964 -36.64382 -36.00010 -34.23238 -33.30690 -30.65432 -30.50141 -29.81798 -27.99622 -26.96962 -24.77103 -24.42229 -23.79461 -23.17414 -22.51336 -21.03243 -20.01516 -19.69212 -19.51731 -18.49809 -17.88867 -17.68423 -17.35773 -17.04882 -16.79003 -16.57137 -16.33063 -15.86269 -15.33929 -15.10490 -14.81875 -14.74212 -14.25974 -13.97338 -13.93995 -13.70842 -13.58394 -13.42014 -13.29025 -13.21253 -13.07982 -12.93015 -12.67192 -12.56485 -12.43804 -12.18308 -11.88258 -11.80400 -11.67154 -11.56401 -11.48385 -11.22926 -11.00650 -10.51255 -10.34190 -10.14497 -9.18068 -8.18621 -7.89491 -5.54906 0.52093 0.81227 1.15759 1.26461 1.39840 1.47613 2.21625 2.24275 2.44320 2.53343 2.91109 3.22002 3.34988 3.53614 3.76149 3.97407 4.02480 4.14169 4.19387 4.29532 4.34956 4.36138 4.43711 4.46233 4.51768 4.58329 4.69013 4.69552 4.75285 4.81748 4.93481 4.94542 5.03519 5.07803 5.13438 5.20919 5.34452 5.62177 5.67186 5.99722 6.16513 6.24651 6.45223 6.48271 6.79050 6.81506 6.86207 7.65883 7.86394 8.65580 9.25713 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003839 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.396182 B = 7291.944535 C = 7828.641020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.627 5.627 3 C 0.131 3.869 4 C 0.103 3.897 5 H 0.057 0.943 6 C -0.119 4.119 7 C 0.089 3.911 8 N -0.631 5.631 9 C -0.209 4.209 10 H -0.001 1.001 11 C 0.029 3.971 12 N -0.905 5.905 13 Si 0.902 3.098 14 H -0.320 1.320 15 H -0.283 1.283 16 H -0.224 1.224 17 C 0.493 3.507 18 O -0.516 6.516 19 C -0.116 4.116 20 C -0.124 4.124 21 C 0.110 3.890 22 N -0.501 5.501 23 C 0.415 3.585 24 O -0.431 6.431 25 N -0.339 5.339 26 N -0.343 5.343 27 C 0.419 3.581 28 O -0.436 6.436 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.256 0.744 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.129 0.871 45 H 0.432 0.568 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.404 2.242 9.814 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.363 5.363 3 C 0.007 3.993 4 C -0.003 4.003 5 H 0.074 0.926 6 C -0.158 4.158 7 C -0.035 4.035 8 N -0.360 5.360 9 C -0.338 4.338 10 H 0.016 0.984 11 C -0.171 4.171 12 N -0.546 5.546 13 Si 0.731 3.269 14 H -0.249 1.249 15 H -0.209 1.209 16 H -0.149 1.149 17 C 0.280 3.720 18 O -0.389 6.389 19 C -0.156 4.156 20 C -0.163 4.163 21 C -0.012 4.012 22 N -0.220 5.220 23 C 0.104 3.896 24 O -0.235 6.235 25 N -0.184 5.184 26 N -0.189 5.189 27 C 0.108 3.892 28 O -0.239 6.239 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.126 0.874 44 H 0.147 0.853 45 H 0.294 0.706 46 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -12.699 0.630 9.722 16.005 hybrid contribution -1.160 1.018 -1.179 1.942 sum -13.859 1.648 8.542 16.363 Atomic orbital electron populations 1.21927 0.78761 1.03025 1.03074 1.47748 1.07250 1.05685 1.75665 1.21479 0.96731 0.84911 0.96146 1.23374 0.93354 0.91170 0.92376 0.92571 1.23357 0.98941 0.96122 0.97361 1.22957 0.97997 0.86867 0.95707 1.46269 1.40491 1.02462 1.46767 1.17573 0.93652 0.82318 1.40288 0.98377 1.26196 1.00082 0.94868 0.95992 1.69972 1.36916 0.99365 1.48348 0.86568 0.82834 0.80061 0.77448 1.24949 1.20896 1.14862 1.20666 0.88201 0.85863 0.77235 1.90820 1.15942 1.86868 1.45236 1.21401 0.98356 0.91619 1.04249 1.21709 0.98157 0.92022 1.04455 1.22146 0.89835 0.82375 1.06806 1.47172 1.38629 1.30380 1.05807 1.21306 0.93143 0.92476 0.82641 1.84847 1.60875 1.62702 1.15049 1.78157 1.19854 1.19545 1.00848 1.78202 1.19668 1.19320 1.01675 1.21401 0.94548 0.90989 0.82224 1.85089 1.53053 1.68614 1.17146 0.89704 0.90763 0.92099 0.87939 0.93020 0.88956 0.89997 0.94436 0.94395 0.93419 0.90270 0.86079 0.93074 0.90433 0.87373 0.85271 0.70581 0.70760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.65 9.73 127.77 1.24 2.89 16 2 N -0.63 -20.48 2.24 -846.78 -1.90 -22.38 16 3 C 0.13 4.35 5.33 86.38 0.46 4.81 16 4 C 0.10 3.74 3.25 45.09 0.15 3.89 16 5 H 0.06 2.05 5.85 -2.39 -0.01 2.04 16 6 C -0.12 -3.62 7.86 31.25 0.25 -3.38 16 7 C 0.09 3.48 8.93 86.48 0.77 4.25 16 8 N -0.63 -30.01 2.53 -694.17 -1.76 -31.77 16 9 C -0.21 -12.12 8.12 84.03 0.68 -11.43 16 10 H 0.00 -0.09 8.06 -2.91 -0.02 -0.11 16 11 C 0.03 1.58 3.15 84.86 0.27 1.85 16 12 N -0.91 -52.12 11.47 21.65 0.25 -51.87 16 13 Si 0.90 41.90 26.22 68.60 1.80 43.69 16 14 H -0.32 -16.23 7.11 99.48 0.71 -15.53 16 15 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.22 -9.31 4.35 99.48 0.43 -8.88 16 17 C 0.49 19.15 4.89 87.66 0.43 19.58 16 18 O -0.52 -26.26 11.72 -3.02 -0.04 -26.30 16 19 C -0.12 -3.41 4.37 29.85 0.13 -3.28 16 20 C -0.12 -4.02 4.83 30.59 0.15 -3.87 16 21 C 0.11 2.50 6.01 86.38 0.52 3.02 16 22 N -0.50 -13.98 2.76 -755.17 -2.08 -16.07 16 23 C 0.42 11.86 9.15 179.72 1.65 13.51 16 24 O -0.43 -8.79 13.58 -89.43 -1.21 -10.00 16 25 N -0.34 -11.95 12.72 -173.66 -2.21 -14.16 16 26 N -0.34 -12.68 12.72 -173.66 -2.21 -14.89 16 27 C 0.42 13.49 9.15 179.72 1.65 15.13 16 28 O -0.44 -12.41 13.58 -89.48 -1.21 -13.62 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16 31 H 0.06 1.35 6.48 -2.39 -0.02 1.33 16 32 H 0.10 2.44 8.13 -2.39 -0.02 2.42 16 33 H 0.05 2.10 7.27 -2.39 -0.02 2.08 16 34 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 36 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.26 13.97 8.17 -92.71 -0.76 13.22 16 39 H 0.08 2.34 7.26 -2.39 -0.02 2.33 16 40 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 42 H 0.08 3.45 5.79 -2.39 -0.01 3.44 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.43 5.11 9.06 -74.06 -0.67 4.44 16 46 H 0.43 6.35 9.06 -74.06 -0.67 5.68 16 Total: -1.00 -88.29 369.25 -2.80 -91.09 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.57 Total: 19.31 kcal Atomic # 6 Polarization: 38.62 SS G_CDS: 8.33 Total: 46.96 kcal Atomic # 7 Polarization: -141.23 SS G_CDS: -9.90 Total: -151.13 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -2.46 Total: -49.92 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.80 Total: 43.69 kcal Total: -88.29 -2.80 -91.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264364962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.864 kcal (2) G-P(sol) polarization free energy of solvation -88.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds