Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.47052 * 125.40975 * 2 1 4 4 C 1.54108 * 103.86509 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.54569 * 241.26514 * 4 3 2 6 6 C 1.50701 * 110.55176 * 118.59400 * 4 3 2 7 7 O 1.21281 * 120.00025 * 262.00376 * 6 4 3 8 8 N 1.34771 * 119.99853 * 82.00087 * 6 4 3 9 9 C 1.46504 * 119.99910 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.62813 * 31.89257 * 9 8 6 11 11 C 1.55144 * 110.70181 * 268.59676 * 9 8 6 12 12 C 1.54906 * 101.65201 * 205.96220 * 11 9 8 13 13 N 1.47848 * 104.79253 * 37.07548 * 12 11 9 14 14 C 1.46902 * 110.99608 * 213.63549 * 13 12 11 15 15 C 1.50702 * 109.47027 * 290.84046 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99593 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47011 * 329.99735 * 22 20 18 26 26 C 1.47437 * 108.57018 * 335.90043 * 13 12 11 27 27 N 1.47058 * 103.98839 * 359.92715 * 4 3 2 28 28 C 1.33944 * 125.41255 * 180.02562 * 2 1 3 29 29 O 1.21595 * 123.04029 * 359.97438 * 28 2 1 30 30 H 1.09000 * 109.47615 * 89.99718 * 1 2 3 31 31 H 1.09003 * 109.47311 * 210.00289 * 1 2 3 32 32 H 1.09004 * 109.47198 * 329.99696 * 1 2 3 33 33 H 1.09002 * 110.55223 * 61.40569 * 3 2 1 34 34 H 1.09001 * 110.67819 * 298.65641 * 3 2 1 35 35 H 0.97006 * 119.99968 * 359.97438 * 8 6 4 36 36 H 1.08999 * 110.99437 * 324.06014 * 11 9 8 37 37 H 1.09005 * 110.98767 * 87.87615 * 11 9 8 38 38 H 1.08996 * 110.37455 * 278.24584 * 12 11 9 39 39 H 1.08997 * 110.37446 * 155.90114 * 12 11 9 40 40 H 1.09004 * 109.47131 * 170.84290 * 14 13 12 41 41 H 1.09000 * 109.47732 * 50.84401 * 14 13 12 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.89060 * 120.39533 * 26 13 12 45 45 H 1.09004 * 109.89036 * 241.42915 * 26 13 12 46 46 H 0.96994 * 125.41137 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2867 0.9483 0.8942 6 6 4.4900 1.0668 -1.2398 7 8 4.5703 0.3191 -2.1914 8 7 5.0621 2.2860 -1.2906 9 6 5.7807 2.7083 -2.4954 10 1 5.3335 2.2642 -3.3847 11 6 7.2852 2.3437 -2.3929 12 6 7.9276 3.4010 -3.3251 13 7 7.1372 4.6305 -3.1027 14 6 7.0328 5.4197 -4.3373 15 6 8.3818 5.9978 -4.6794 16 8 9.3364 5.7740 -3.9654 17 7 8.5290 6.7585 -5.7822 18 6 9.7574 7.2798 -6.0966 19 1 10.6073 7.0805 -5.4607 20 6 9.9090 8.0645 -7.2332 21 7 11.0866 8.5637 -7.5348 22 14 8.4388 8.4098 -8.3326 23 1 7.7563 9.6459 -7.8727 24 1 8.8993 8.5904 -9.7328 25 1 7.4920 7.2677 -8.2663 26 6 5.8028 4.2474 -2.6062 27 7 3.5570 -0.8252 0.0008 28 6 2.2411 -1.0916 -0.0005 29 8 1.7945 -2.2226 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 2.1406 1.7934 0.8962 34 1 2.1414 1.7956 -0.8949 35 1 4.9975 2.8841 -0.5296 36 1 7.6451 2.4548 -1.3700 37 1 7.4684 1.3347 -2.7622 38 1 7.8530 3.0849 -4.3656 39 1 8.9697 3.5652 -3.0513 40 1 6.3171 6.2289 -4.1919 41 1 6.6954 4.7782 -5.1514 42 1 7.7657 6.9373 -6.3535 43 1 11.1923 9.1118 -8.3281 44 1 5.6300 4.6922 -1.6261 45 1 5.0367 4.5822 -3.3056 46 1 4.2667 -1.4863 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266333628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -54.651192 kcal Electronic energy + Delta-G solvation = -29019.776244 eV Core-core repulsion = 24752.789356 eV Total energy + Delta-G solvation = -4266.986888 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.81447 -40.12618 -39.02054 -37.73274 -36.61539 -34.82239 -34.53820 -33.90771 -31.77453 -31.32905 -29.94911 -28.65971 -27.68479 -26.64654 -24.49771 -23.96604 -21.59466 -21.16892 -21.02037 -20.90922 -19.40538 -18.43992 -18.25220 -18.12184 -16.98898 -16.69476 -16.10899 -15.87041 -15.66731 -15.33400 -14.93306 -14.76762 -14.66010 -14.54918 -14.31657 -13.93848 -13.90446 -13.46822 -13.19494 -13.07276 -13.00005 -12.90790 -12.65731 -12.56160 -12.26334 -11.99429 -11.86195 -11.68296 -11.28839 -11.13195 -10.90132 -10.74439 -10.61959 -10.57707 -9.99730 -9.70851 -9.58817 -9.46753 -9.12017 -8.63887 -8.20416 -8.08528 -6.32861 -3.84374 1.87094 2.16149 2.39945 2.81969 3.00274 3.04585 3.13259 3.37604 3.66623 3.71184 3.84545 4.06358 4.08656 4.19055 4.31278 4.47206 4.61265 4.70255 4.72124 4.82136 4.90686 5.04089 5.18091 5.18855 5.22346 5.24665 5.38250 5.43308 5.53787 5.58624 5.67486 5.81377 5.86778 5.96790 6.12033 6.14323 6.33656 6.61121 6.91789 6.98257 7.02120 7.05547 7.56204 7.68467 8.12264 8.13444 8.58182 8.93444 9.40476 9.81208 10.80239 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.001815 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.485041 B =15425.677353 C =15873.600410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.637 5.637 3 C 0.106 3.894 4 C 0.105 3.895 5 H 0.118 0.882 6 C 0.502 3.498 7 O -0.519 6.519 8 N -0.712 5.712 9 C 0.122 3.878 10 H 0.097 0.903 11 C -0.139 4.139 12 C 0.052 3.948 13 N -0.501 5.501 14 C 0.036 3.964 15 C 0.453 3.547 16 O -0.559 6.559 17 N -0.592 5.592 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.038 3.962 27 N -0.716 5.716 28 C 0.704 3.296 29 O -0.580 6.580 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.404 0.596 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.427 -11.530 16.297 29.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.377 5.377 3 C -0.018 4.018 4 C -0.006 4.006 5 H 0.136 0.864 6 C 0.285 3.715 7 O -0.393 6.393 8 N -0.365 5.365 9 C 0.016 3.984 10 H 0.116 0.884 11 C -0.178 4.178 12 C -0.076 4.076 13 N -0.225 5.225 14 C -0.096 4.096 15 C 0.238 3.762 16 O -0.440 6.440 17 N -0.232 5.232 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.091 4.091 27 N -0.378 5.378 28 C 0.405 3.595 29 O -0.457 6.457 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.105 0.895 35 H 0.239 0.761 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.081 0.919 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -20.756 -12.361 16.295 29.139 hybrid contribution -1.054 0.225 -1.426 1.787 sum -21.809 -12.136 14.869 29.052 Atomic orbital electron populations 1.21421 0.75138 1.03342 1.02161 1.46988 1.06504 1.05472 1.78689 1.22279 0.86150 0.89183 1.04181 1.21836 0.97235 0.83704 0.97855 0.86405 1.20771 0.79393 0.82111 0.89273 1.90784 1.58973 1.52544 1.36977 1.45953 1.55114 1.16748 1.18683 1.22337 0.92616 0.95305 0.88144 0.88448 1.23146 0.93705 0.99548 1.01418 1.23042 1.00073 0.86813 0.97627 1.63293 1.10898 1.19249 1.29062 1.22186 0.97997 0.98146 0.91244 1.19592 0.89686 0.83736 0.83166 1.90552 1.40836 1.61804 1.50803 1.42207 1.10848 1.46962 1.23157 1.19417 0.87133 1.27393 1.09339 0.86275 1.25035 0.96845 0.97022 0.97285 1.69621 1.22031 1.33699 1.26782 0.86675 0.82494 0.78990 0.81229 1.19612 1.20201 1.19573 1.23090 0.91752 0.92431 1.01862 1.44905 1.06993 1.05989 1.79895 1.15885 0.81624 0.84657 0.77375 1.90979 1.75759 1.20904 1.58017 0.92510 0.90214 0.90682 0.88535 0.89536 0.76091 0.90186 0.90520 0.93578 0.88216 0.89146 0.93050 0.79767 0.91618 0.89915 0.91936 0.72217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.62 11.03 59.84 0.66 1.28 16 2 N -0.64 -4.71 3.36 -186.64 -0.63 -5.34 16 3 C 0.11 0.42 7.32 -3.16 -0.02 0.40 16 4 C 0.10 0.53 4.16 -68.20 -0.28 0.24 16 5 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 6 C 0.50 3.93 6.94 -10.99 -0.08 3.85 16 7 O -0.52 -6.67 16.22 5.56 0.09 -6.58 16 8 N -0.71 -4.33 5.18 -52.04 -0.27 -4.60 16 9 C 0.12 1.11 3.31 -66.10 -0.22 0.89 16 10 H 0.10 1.05 7.55 -51.93 -0.39 0.66 16 11 C -0.14 -1.49 6.76 -24.59 -0.17 -1.66 16 12 C 0.05 0.74 5.74 -2.30 -0.01 0.73 16 13 N -0.50 -7.12 4.86 -232.68 -1.13 -8.25 16 14 C 0.04 0.56 5.05 -4.97 -0.03 0.54 16 15 C 0.45 9.90 7.58 -10.98 -0.08 9.82 16 16 O -0.56 -14.43 14.61 5.55 0.08 -14.35 16 17 N -0.59 -13.74 5.09 -10.96 -0.06 -13.79 16 18 C -0.30 -8.45 10.16 -14.93 -0.15 -8.61 16 19 H 0.12 3.79 7.39 -52.49 -0.39 3.41 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.48 13.96 55.50 0.77 -24.70 16 22 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 26 C 0.04 0.36 6.62 -2.84 -0.02 0.34 16 27 N -0.72 -5.89 5.64 -59.24 -0.33 -6.22 16 28 C 0.70 7.65 8.61 -88.12 -0.76 6.89 16 29 O -0.58 -8.74 17.53 5.28 0.09 -8.65 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.48 7.92 -51.93 -0.41 0.07 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.09 0.33 7.72 -51.93 -0.40 -0.07 16 35 H 0.40 1.17 8.37 -40.82 -0.34 0.82 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.67 7.62 -51.93 -0.40 0.28 16 39 H 0.10 1.70 7.37 -51.93 -0.38 1.31 16 40 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 41 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 42 H 0.37 7.51 5.76 -40.82 -0.24 7.28 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.08 0.65 7.72 -51.93 -0.40 0.25 16 45 H 0.06 0.54 7.55 -51.93 -0.39 0.14 16 46 H 0.43 3.34 8.96 -40.82 -0.37 2.97 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -39.34 380.67 -8.25 -47.59 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.63 Total: 9.09 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -1.26 Total: 15.73 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -1.64 Total: -62.91 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: 0.26 Total: -29.58 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.34 -8.25 -47.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266333628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.060 kcal (2) G-P(sol) polarization free energy of solvation -39.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds