Wall clock time and date at job start Sat Apr 11 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.47052 * 125.40975 * 2 1 4 4 C 1.54108 * 103.86509 * 180.02562 * 3 2 1 5 5 H 1.08997 * 110.54569 * 241.26514 * 4 3 2 6 6 C 1.50701 * 110.55176 * 118.59400 * 4 3 2 7 7 O 1.21281 * 120.00025 * 262.00376 * 6 4 3 8 8 N 1.34771 * 119.99853 * 82.00087 * 6 4 3 9 9 C 1.46504 * 119.99910 * 180.02562 * 8 6 4 10 10 H 1.08996 * 110.62813 * 31.89257 * 9 8 6 11 11 C 1.55144 * 110.70181 * 268.59676 * 9 8 6 12 12 C 1.54906 * 101.65201 * 205.96220 * 11 9 8 13 13 N 1.47848 * 104.79253 * 37.07548 * 12 11 9 14 14 C 1.46902 * 110.99608 * 213.63549 * 13 12 11 15 15 C 1.50702 * 109.47027 * 290.84046 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00042 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00013 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99593 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99761 * 22 20 18 25 25 H 1.48498 * 109.47011 * 329.99735 * 22 20 18 26 26 C 1.47437 * 108.57018 * 335.90043 * 13 12 11 27 27 N 1.47058 * 103.98839 * 359.92715 * 4 3 2 28 28 C 1.33944 * 125.41255 * 180.02562 * 2 1 3 29 29 O 1.21595 * 123.04029 * 359.97438 * 28 2 1 30 30 H 1.09000 * 109.47615 * 89.99718 * 1 2 3 31 31 H 1.09003 * 109.47311 * 210.00289 * 1 2 3 32 32 H 1.09004 * 109.47198 * 329.99696 * 1 2 3 33 33 H 1.09002 * 110.55223 * 61.40569 * 3 2 1 34 34 H 1.09001 * 110.67819 * 298.65641 * 3 2 1 35 35 H 0.97006 * 119.99968 * 359.97438 * 8 6 4 36 36 H 1.08999 * 110.99437 * 324.06014 * 11 9 8 37 37 H 1.09005 * 110.98767 * 87.87615 * 11 9 8 38 38 H 1.08996 * 110.37455 * 278.24584 * 12 11 9 39 39 H 1.08997 * 110.37446 * 155.90114 * 12 11 9 40 40 H 1.09004 * 109.47131 * 170.84290 * 14 13 12 41 41 H 1.09000 * 109.47732 * 50.84401 * 14 13 12 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.97005 * 120.00014 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.89060 * 120.39533 * 26 13 12 45 45 H 1.09004 * 109.89036 * 241.42915 * 26 13 12 46 46 H 0.96994 * 125.41137 * 180.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2867 0.9483 0.8942 6 6 4.4900 1.0668 -1.2398 7 8 4.5703 0.3191 -2.1914 8 7 5.0621 2.2860 -1.2906 9 6 5.7807 2.7083 -2.4954 10 1 5.3335 2.2642 -3.3847 11 6 7.2852 2.3437 -2.3929 12 6 7.9276 3.4010 -3.3251 13 7 7.1372 4.6305 -3.1027 14 6 7.0328 5.4197 -4.3373 15 6 8.3818 5.9978 -4.6794 16 8 9.3364 5.7740 -3.9654 17 7 8.5290 6.7585 -5.7822 18 6 9.7574 7.2798 -6.0966 19 1 10.6073 7.0805 -5.4607 20 6 9.9090 8.0645 -7.2332 21 7 11.0866 8.5637 -7.5348 22 14 8.4388 8.4098 -8.3326 23 1 7.7563 9.6459 -7.8727 24 1 8.8993 8.5904 -9.7328 25 1 7.4920 7.2677 -8.2663 26 6 5.8028 4.2474 -2.6062 27 7 3.5570 -0.8252 0.0008 28 6 2.2411 -1.0916 -0.0005 29 8 1.7945 -2.2226 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5139 33 1 2.1406 1.7934 0.8962 34 1 2.1414 1.7956 -0.8949 35 1 4.9975 2.8841 -0.5296 36 1 7.6451 2.4548 -1.3700 37 1 7.4684 1.3347 -2.7622 38 1 7.8530 3.0849 -4.3656 39 1 8.9697 3.5652 -3.0513 40 1 6.3171 6.2289 -4.1919 41 1 6.6954 4.7782 -5.1514 42 1 7.7657 6.9373 -6.3535 43 1 11.1923 9.1118 -8.3281 44 1 5.6300 4.6922 -1.6261 45 1 5.0367 4.5822 -3.3056 46 1 4.2667 -1.4863 0.0012 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266333628.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:29 Heat of formation + Delta-G solvation = -91.537992 kcal Electronic energy + Delta-G solvation = -29021.375775 eV Core-core repulsion = 24752.789356 eV Total energy + Delta-G solvation = -4268.586420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.40155 -41.01263 -40.26426 -39.05847 -37.39005 -36.04539 -35.45454 -35.07300 -33.74307 -32.38642 -30.59479 -29.48365 -28.42924 -27.79267 -25.83541 -24.82575 -22.47445 -22.06471 -21.65027 -21.58633 -21.22574 -20.21744 -18.94364 -18.69013 -17.85791 -17.55090 -17.26802 -16.94295 -16.70420 -16.37065 -16.14136 -15.90360 -15.59260 -15.21030 -15.13415 -14.94541 -14.84523 -14.55510 -14.47556 -14.36277 -14.21186 -13.57647 -13.51260 -13.33841 -13.20556 -13.04226 -12.96628 -12.70527 -12.65667 -12.40831 -12.21578 -11.97449 -11.87439 -11.55922 -11.47888 -11.34822 -10.43139 -10.39470 -10.22241 -10.12154 -9.58260 -9.23652 -8.39706 -6.00287 1.30758 1.31374 1.36467 1.45115 1.60273 1.80708 1.99225 2.13169 2.24097 2.68647 2.93180 3.15515 3.22385 3.28709 3.52233 3.62461 3.73187 3.92434 4.03779 4.14110 4.19976 4.30813 4.36631 4.40582 4.49260 4.51230 4.56040 4.69955 4.73244 4.86551 4.87926 4.91606 4.97241 5.04851 5.13999 5.46441 5.54331 5.61783 5.88130 5.96984 6.01066 6.08503 6.33905 6.51669 6.61889 6.90922 7.16699 7.42497 7.42898 8.00343 8.77978 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028994 B = 0.001815 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.485041 B =15425.677353 C =15873.600410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.109 3.891 5 H 0.164 0.836 6 C 0.504 3.496 7 O -0.574 6.574 8 N -0.692 5.692 9 C 0.133 3.867 10 H 0.083 0.917 11 C -0.129 4.129 12 C 0.052 3.948 13 N -0.522 5.522 14 C 0.047 3.953 15 C 0.450 3.550 16 O -0.607 6.607 17 N -0.594 5.594 18 C -0.326 4.326 19 H 0.054 0.946 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.278 1.278 25 H -0.232 1.232 26 C 0.043 3.957 27 N -0.718 5.718 28 C 0.689 3.311 29 O -0.637 6.637 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.425 0.575 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.128 0.872 41 H 0.077 0.923 42 H 0.389 0.611 43 H 0.278 0.722 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.629 -10.076 17.165 32.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.375 5.375 3 C -0.018 4.018 4 C -0.001 4.001 5 H 0.182 0.818 6 C 0.289 3.711 7 O -0.452 6.452 8 N -0.345 5.345 9 C 0.027 3.973 10 H 0.101 0.899 11 C -0.168 4.168 12 C -0.077 4.077 13 N -0.247 5.247 14 C -0.084 4.084 15 C 0.238 3.762 16 O -0.490 6.490 17 N -0.236 5.236 18 C -0.455 4.455 19 H 0.073 0.927 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.155 1.155 26 C -0.085 4.085 27 N -0.378 5.378 28 C 0.389 3.611 29 O -0.519 6.519 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.161 0.839 34 H 0.112 0.888 35 H 0.264 0.736 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -24.983 -10.840 17.221 32.222 hybrid contribution 0.390 -0.237 -1.593 1.657 sum -24.593 -11.077 15.629 31.173 Atomic orbital electron populations 1.21598 0.74165 1.04432 1.02358 1.47194 1.07307 1.05657 1.77370 1.22655 0.84287 0.88040 1.06796 1.22170 0.98385 0.81691 0.97835 0.81838 1.21290 0.78753 0.81708 0.89371 1.90779 1.61110 1.54166 1.39179 1.45707 1.53791 1.16618 1.18419 1.22014 0.91252 0.95162 0.88902 0.89890 1.23029 0.95002 0.97902 1.00849 1.22868 0.98570 0.88375 0.97840 1.63197 1.13828 1.19229 1.28455 1.22129 0.93788 0.99625 0.92852 1.20954 0.91846 0.81833 0.81557 1.90539 1.43485 1.62880 1.52117 1.42046 1.09748 1.47559 1.24291 1.18984 0.87652 1.29330 1.09530 0.92736 1.26116 1.00953 0.95832 0.98644 1.69810 1.25354 1.34701 1.27820 0.85363 0.78009 0.80504 0.77625 1.17931 1.20318 1.15523 1.23180 0.89459 0.92347 1.03498 1.44976 1.06163 1.07722 1.78982 1.16307 0.82628 0.84760 0.77435 1.90920 1.76919 1.23379 1.60683 0.92793 0.91871 0.86840 0.83927 0.88829 0.73605 0.89325 0.91260 0.94602 0.92316 0.85439 0.90554 0.77557 0.91239 0.87255 0.89767 0.72447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.97 11.03 127.77 1.41 2.38 16 2 N -0.64 -7.95 3.36 -863.13 -2.90 -10.85 16 3 C 0.10 0.35 7.32 86.65 0.63 0.99 16 4 C 0.11 0.69 4.16 44.51 0.19 0.88 16 5 H 0.16 -0.39 8.14 -2.39 -0.02 -0.41 16 6 C 0.50 6.40 6.94 87.66 0.61 7.00 16 7 O -0.57 -14.11 16.22 -3.03 -0.05 -14.16 16 8 N -0.69 -5.56 5.18 -436.94 -2.26 -7.83 16 9 C 0.13 2.01 3.31 46.17 0.15 2.16 16 10 H 0.08 1.59 7.55 -2.39 -0.02 1.57 16 11 C -0.13 -2.60 6.76 31.98 0.22 -2.38 16 12 C 0.05 1.47 5.74 86.77 0.50 1.97 16 13 N -0.52 -13.63 4.86 -890.08 -4.33 -17.96 16 14 C 0.05 1.33 5.05 85.56 0.43 1.76 16 15 C 0.45 19.65 7.58 87.66 0.66 20.31 16 16 O -0.61 -32.73 14.61 -3.07 -0.04 -32.77 16 17 N -0.59 -27.36 5.09 -306.98 -1.56 -28.92 16 18 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 19 H 0.05 3.78 7.39 -2.91 -0.02 3.76 16 20 C -0.02 -0.94 5.50 84.92 0.47 -0.48 16 21 N -0.94 -56.21 13.96 21.66 0.30 -55.91 16 22 Si 0.96 38.20 27.74 68.60 1.90 40.11 16 23 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 26 C 0.04 0.62 6.62 86.65 0.57 1.19 16 27 N -0.72 -10.88 5.64 -459.88 -2.59 -13.47 16 28 C 0.69 14.58 8.61 179.47 1.54 16.12 16 29 O -0.64 -20.00 17.53 -4.02 -0.07 -20.07 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.75 7.92 -2.39 -0.02 0.73 16 32 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.14 -0.72 8.14 -2.39 -0.02 -0.74 16 34 H 0.09 0.25 7.72 -2.39 -0.02 0.23 16 35 H 0.42 0.05 8.37 -92.70 -0.78 -0.72 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.04 1.06 7.62 -2.39 -0.02 1.04 16 39 H 0.06 2.13 7.37 -2.39 -0.02 2.11 16 40 H 0.13 2.70 8.03 -2.38 -0.02 2.68 16 41 H 0.08 1.82 7.85 -2.39 -0.02 1.80 16 42 H 0.39 14.69 5.76 -92.71 -0.53 14.16 16 43 H 0.28 15.28 8.31 -92.70 -0.77 14.51 16 44 H 0.11 1.07 7.72 -2.39 -0.02 1.05 16 45 H 0.08 0.95 7.55 -2.39 -0.02 0.93 16 46 H 0.43 6.53 8.96 -92.71 -0.83 5.70 16 Total: -1.00 -97.56 380.67 -4.52 -102.08 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -1.15 Total: 25.87 kcal Atomic # 6 Polarization: 25.65 SS G_CDS: 8.24 Total: 33.89 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -13.34 Total: -134.93 kcal Atomic # 8 Polarization: -66.84 SS G_CDS: -0.16 Total: -67.01 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.11 kcal Total: -97.56 -4.52 -102.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266333628.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.539 kcal (2) G-P(sol) polarization free energy of solvation -97.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds