Wall clock time and date at job start Sat Apr 11 2020 05:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.47048 * 125.41255 * 2 1 4 4 C 1.54098 * 103.86272 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.54937 * 241.26211 * 4 3 2 6 6 C 1.50704 * 110.54930 * 118.59578 * 4 3 2 7 7 O 1.21275 * 119.99894 * 259.99842 * 6 4 3 8 8 N 1.34776 * 119.99573 * 80.00079 * 6 4 3 9 9 C 1.46507 * 119.99504 * 180.02562 * 8 6 4 10 10 H 1.08997 * 110.64248 * 323.30097 * 9 8 6 11 11 C 1.54590 * 110.72525 * 86.45319 * 9 8 6 12 12 C 1.53995 * 105.14188 * 140.31570 * 11 9 8 13 13 N 1.47903 * 107.05650 * 1.22162 * 12 11 9 14 14 C 1.46892 * 110.99916 * 214.15510 * 13 12 11 15 15 C 1.50706 * 109.47104 * 176.63946 * 14 13 12 16 16 O 1.21295 * 119.99970 * 6.13723 * 15 14 13 17 17 N 1.34770 * 119.99975 * 186.13848 * 15 14 13 18 18 C 1.37113 * 120.00026 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99320 * 359.97438 * 18 17 15 20 20 C 1.38946 * 120.00137 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99757 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99939 * 0.26942 * 20 18 17 23 23 H 1.48496 * 109.47104 * 269.72789 * 22 20 18 24 24 H 1.48497 * 109.47095 * 29.73181 * 22 20 18 25 25 H 1.48495 * 109.46878 * 149.72641 * 22 20 18 26 26 C 1.48534 * 105.82055 * 334.67393 * 13 12 11 27 27 N 1.47050 * 103.86403 * 359.97438 * 4 3 2 28 28 C 1.33946 * 125.40518 * 180.02562 * 2 1 3 29 29 O 1.21583 * 123.04830 * 359.97290 * 28 2 1 30 30 H 1.09002 * 109.47163 * 89.99445 * 1 2 3 31 31 H 1.08997 * 109.47246 * 210.00060 * 1 2 3 32 32 H 1.09003 * 109.47042 * 329.99699 * 1 2 3 33 33 H 1.09004 * 110.55036 * 61.40696 * 3 2 1 34 34 H 1.08998 * 110.55044 * 298.59764 * 3 2 1 35 35 H 0.97000 * 120.00665 * 359.97438 * 8 6 4 36 36 H 1.09004 * 110.31134 * 21.39581 * 11 9 8 37 37 H 1.09004 * 110.39021 * 259.27155 * 11 9 8 38 38 H 1.08997 * 109.91877 * 241.87219 * 12 11 9 39 39 H 1.08999 * 109.91725 * 120.57846 * 12 11 9 40 40 H 1.09006 * 109.47525 * 56.64369 * 14 13 12 41 41 H 1.09002 * 109.47481 * 296.63986 * 14 13 12 42 42 H 0.96996 * 120.00496 * 0.02562 * 17 15 14 43 43 H 0.97006 * 119.99549 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.66736 * 157.64363 * 26 13 12 45 45 H 1.08999 * 110.66270 * 280.76786 * 26 13 12 46 46 H 0.97000 * 125.41262 * 179.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1984 0.0000 4 6 3.7504 0.6324 -0.0007 5 1 4.2868 0.9481 0.8942 6 6 4.4900 1.0666 -1.2398 7 8 4.6015 0.3056 -2.1774 8 7 5.0276 2.3008 -1.3059 9 6 5.7462 2.7231 -2.5108 10 1 6.3096 1.8913 -2.9336 11 6 4.7674 3.3076 -3.5549 12 6 5.5046 4.5132 -4.1667 13 7 6.8346 4.5807 -3.5231 14 6 7.2742 5.9737 -3.3677 15 6 8.5914 6.0061 -2.6362 16 8 9.1672 4.9704 -2.3776 17 7 9.1294 7.1860 -2.2692 18 6 10.3281 7.2156 -1.6041 19 1 10.8407 6.2933 -1.3739 20 6 10.8826 8.4320 -1.2253 21 7 12.0316 8.4603 -0.5882 22 14 9.9913 10.0267 -1.6155 23 1 10.4320 10.5282 -2.9419 24 1 8.5269 9.7820 -1.6402 25 1 10.3067 11.0375 -0.5744 26 6 6.6787 3.9210 -2.2014 27 7 3.5537 -0.8249 -0.0003 28 6 2.2411 -1.0918 -0.0005 29 8 1.7945 -2.2226 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 2.1407 1.7933 0.8962 34 1 2.1407 1.7934 -0.8961 35 1 4.9382 2.9097 -0.5562 36 1 3.8470 3.6332 -3.0700 37 1 4.5474 2.5682 -4.3250 38 1 4.9485 5.4291 -3.9667 39 1 5.6189 4.3723 -5.2415 40 1 6.5286 6.5287 -2.7983 41 1 7.3933 6.4289 -4.3509 42 1 8.6688 8.0143 -2.4756 43 1 12.4189 9.3096 -0.3241 44 1 7.6422 3.5726 -1.8294 45 1 6.2111 4.5980 -1.4864 46 1 4.2620 -1.4876 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266333630.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:41 Heat of formation + Delta-G solvation = -54.243522 kcal Electronic energy + Delta-G solvation = -29328.476872 eV Core-core repulsion = 25061.507662 eV Total energy + Delta-G solvation = -4266.969210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74573 -40.04333 -39.01575 -37.69859 -36.53980 -34.76275 -34.45627 -33.99302 -31.81784 -31.35523 -29.91018 -28.50942 -27.59660 -26.69976 -24.46942 -23.95614 -21.53021 -21.42173 -20.93968 -20.41181 -19.44858 -18.39732 -18.21237 -18.02749 -16.92480 -16.53010 -16.24488 -15.95817 -15.44927 -15.15498 -15.07548 -14.81370 -14.64427 -14.49104 -14.24010 -13.86154 -13.82070 -13.66966 -13.18435 -13.04200 -12.96663 -12.83596 -12.62175 -12.44306 -12.43760 -11.90993 -11.86733 -11.51887 -11.38200 -11.06892 -10.82015 -10.66227 -10.65901 -10.48839 -10.04518 -9.63459 -9.62762 -9.36564 -9.04441 -8.65166 -8.28110 -8.18696 -6.37991 -3.89814 1.98444 2.25938 2.49937 2.90548 2.95349 3.00920 3.09484 3.45934 3.64373 3.75415 3.90242 4.03484 4.15349 4.29091 4.47565 4.54054 4.60282 4.75774 4.77972 4.90915 4.93383 5.09642 5.13956 5.20806 5.24897 5.27607 5.44272 5.45434 5.59078 5.65472 5.72813 5.83102 5.86494 5.95545 6.18173 6.20627 6.30098 6.69740 6.93434 6.97466 7.02665 7.13917 7.50625 7.81098 8.06751 8.21551 8.52172 8.87744 9.34694 9.74421 10.74893 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021013 B = 0.002024 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.182717 B =13831.077546 C =14078.065325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.638 5.638 3 C 0.106 3.894 4 C 0.103 3.897 5 H 0.120 0.880 6 C 0.503 3.497 7 O -0.518 6.518 8 N -0.715 5.715 9 C 0.140 3.860 10 H 0.105 0.895 11 C -0.139 4.139 12 C 0.034 3.966 13 N -0.490 5.490 14 C 0.035 3.965 15 C 0.449 3.551 16 O -0.560 6.560 17 N -0.589 5.589 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.879 5.879 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.276 1.276 26 C 0.036 3.964 27 N -0.714 5.714 28 C 0.705 3.295 29 O -0.581 6.581 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.370 0.630 43 H 0.274 0.726 44 H 0.115 0.885 45 H 0.044 0.956 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.376 -6.602 1.284 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.378 5.378 3 C -0.018 4.018 4 C -0.007 4.007 5 H 0.137 0.863 6 C 0.286 3.714 7 O -0.392 6.392 8 N -0.367 5.367 9 C 0.035 3.965 10 H 0.123 0.877 11 C -0.178 4.178 12 C -0.094 4.094 13 N -0.214 5.214 14 C -0.096 4.096 15 C 0.235 3.765 16 O -0.442 6.442 17 N -0.228 5.228 18 C -0.434 4.434 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.519 5.519 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.202 1.202 26 C -0.093 4.093 27 N -0.376 5.376 28 C 0.405 3.595 29 O -0.458 6.458 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.133 0.867 45 H 0.062 0.938 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -22.740 -8.573 0.558 24.309 hybrid contribution -0.768 2.276 0.501 2.454 sum -23.509 -6.297 1.060 24.361 Atomic orbital electron populations 1.21409 0.75239 1.03298 1.02080 1.47003 1.06479 1.05508 1.78776 1.22281 0.86254 0.89172 1.04083 1.21852 0.97186 0.83617 0.98091 0.86272 1.20714 0.79622 0.82088 0.88998 1.90774 1.57856 1.52603 1.37935 1.45985 1.56049 1.15152 1.19533 1.21996 0.92116 0.98141 0.84257 0.87731 1.22791 0.98188 0.97800 0.99034 1.22924 0.89136 0.96989 1.00351 1.64480 1.24004 1.14616 1.18332 1.22137 0.96461 0.89658 1.01393 1.19597 0.87555 0.84484 0.84878 1.90538 1.63184 1.32143 1.58356 1.42214 1.21577 1.06231 1.52805 1.19423 0.95536 0.96627 1.31829 0.86228 1.25049 0.96094 0.97947 0.97070 1.69622 1.17060 1.26911 1.38317 0.86672 0.79513 0.83934 0.79243 1.19559 1.19588 1.20167 1.23558 1.01023 0.93678 0.91000 1.44833 1.07017 1.06079 1.79632 1.15802 0.81656 0.84645 0.77405 1.90972 1.75792 1.20884 1.58199 0.92567 0.90238 0.90752 0.88580 0.89618 0.76300 0.91314 0.90473 0.93662 0.89994 0.93280 0.88720 0.79712 0.91554 0.86657 0.93815 0.72187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.71 11.03 59.85 0.66 1.37 16 2 N -0.64 -5.27 3.36 -186.74 -0.63 -5.90 16 3 C 0.11 0.54 7.32 -3.17 -0.02 0.52 16 4 C 0.10 0.67 4.17 -68.21 -0.28 0.38 16 5 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 6 C 0.50 4.71 6.95 -10.98 -0.08 4.64 16 7 O -0.52 -7.28 16.29 5.56 0.09 -7.19 16 8 N -0.71 -5.77 5.14 -52.01 -0.27 -6.04 16 9 C 0.14 1.56 3.35 -66.07 -0.22 1.34 16 10 H 0.10 1.43 7.69 -51.93 -0.40 1.03 16 11 C -0.14 -1.37 6.67 -25.38 -0.17 -1.54 16 12 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 13 N -0.49 -7.11 5.11 -231.89 -1.18 -8.29 16 14 C 0.04 0.54 5.30 -4.98 -0.03 0.51 16 15 C 0.45 9.51 7.42 -10.99 -0.08 9.43 16 16 O -0.56 -14.01 13.87 5.54 0.08 -13.93 16 17 N -0.59 -13.24 5.09 -10.96 -0.06 -13.30 16 18 C -0.31 -8.27 10.16 -14.93 -0.15 -8.42 16 19 H 0.12 3.72 7.39 -52.48 -0.39 3.34 16 20 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 21 N -0.88 -24.93 13.96 55.50 0.77 -24.15 16 22 Si 0.88 18.55 27.74 -169.99 -4.72 13.83 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 C 0.04 0.48 5.19 -1.90 -0.01 0.47 16 27 N -0.71 -6.71 5.60 -59.33 -0.33 -7.05 16 28 C 0.70 8.29 8.60 -88.40 -0.76 7.53 16 29 O -0.58 -9.22 17.53 5.29 0.09 -9.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.53 7.91 -51.93 -0.41 0.12 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.41 7.72 -51.93 -0.40 0.01 16 35 H 0.40 2.09 8.53 -40.82 -0.35 1.74 16 36 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.43 7.68 -51.93 -0.40 0.03 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.05 0.64 7.99 -51.93 -0.41 0.22 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.12 1.98 6.43 -51.93 -0.33 1.64 16 45 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 46 H 0.44 3.88 8.96 -40.82 -0.37 3.51 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -38.05 380.07 -8.33 -46.38 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -6.65 Total: 11.46 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: -1.26 Total: 17.58 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -1.69 Total: -64.73 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: 0.26 Total: -30.25 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.72 Total: 13.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.05 -8.33 -46.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266333630.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.866 kcal (2) G-P(sol) polarization free energy of solvation -38.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds