Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47051 * 125.41081 * 2 1 4 4 C 1.54107 * 103.85994 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.54663 * 118.60254 * 4 3 2 6 6 C 1.50700 * 110.67023 * 241.34526 * 4 3 2 7 7 O 1.21285 * 120.00039 * 95.97453 * 6 4 3 8 8 N 1.34778 * 120.00373 * 275.96884 * 6 4 3 9 9 C 1.46503 * 119.99726 * 180.02562 * 8 6 4 10 10 H 1.08992 * 112.85535 * 336.19570 * 9 8 6 11 11 C 1.53784 * 113.61192 * 107.51018 * 9 8 6 12 12 C 1.53773 * 87.08440 * 89.11246 * 11 9 8 13 13 H 1.09000 * 113.61398 * 270.88141 * 12 11 9 14 14 N 1.46901 * 113.69273 * 139.99162 * 12 11 9 15 15 C 1.46896 * 110.99981 * 107.46469 * 14 12 11 16 16 C 1.50696 * 109.47209 * 180.02562 * 15 14 12 17 17 O 1.21291 * 119.99951 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00290 * 179.97438 * 16 15 14 19 19 C 1.37105 * 120.00096 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00162 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99901 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99976 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47042 * 59.99754 * 23 21 19 25 25 H 1.48503 * 109.47102 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47266 * 299.99783 * 23 21 19 27 27 C 1.53775 * 87.08256 * 25.42900 * 12 11 9 28 28 N 1.47045 * 103.86622 * 0.02562 * 4 3 2 29 29 C 1.33952 * 125.40746 * 180.02562 * 2 1 3 30 30 O 1.21584 * 123.04486 * 0.26767 * 29 2 1 31 31 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46963 * 300.02244 * 1 2 3 33 33 H 1.08997 * 109.47101 * 60.02101 * 1 2 3 34 34 H 1.09002 * 110.54698 * 61.41426 * 3 2 1 35 35 H 1.08993 * 110.67734 * 298.65580 * 3 2 1 36 36 H 0.97002 * 119.99974 * 0.02562 * 8 6 4 37 37 H 1.09003 * 113.60896 * 203.65992 * 11 9 8 38 38 H 1.09002 * 113.61402 * 334.56062 * 11 9 8 39 39 H 1.00900 * 110.99537 * 343.50950 * 14 12 11 40 40 H 1.09003 * 109.46777 * 299.99888 * 15 14 12 41 41 H 1.09001 * 109.47805 * 59.99841 * 15 14 12 42 42 H 0.96997 * 120.00048 * 359.97438 * 18 16 15 43 43 H 0.96995 * 119.99784 * 180.02562 * 22 21 19 44 44 H 1.09002 * 113.61642 * 220.01949 * 27 12 11 45 45 H 1.09005 * 113.68932 * 89.13173 * 27 12 11 46 46 H 0.97002 * 125.41556 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6324 -0.0007 5 1 4.2853 0.9466 -0.8969 6 6 4.4939 1.0656 1.2365 7 8 4.5449 0.3323 2.2012 8 7 5.1024 2.2677 1.2709 9 6 5.8257 2.6884 2.4734 10 1 5.4783 2.1835 3.3747 11 6 7.3546 2.6762 2.3085 12 6 7.2337 4.1256 1.8094 13 1 7.0805 4.2055 0.7332 14 7 8.2987 5.0100 2.3011 15 6 9.2439 5.3433 1.2272 16 6 10.3198 6.2492 1.7682 17 8 10.3007 6.5846 2.9337 18 7 11.3032 6.6868 0.9571 19 6 12.2817 7.5114 1.4492 20 1 12.2643 7.8107 2.4867 21 6 13.2952 7.9630 0.6128 22 7 13.3156 7.6000 -0.6501 23 14 14.6289 9.0859 1.2834 24 1 15.3511 8.3954 2.3820 25 1 15.5848 9.4224 0.1979 26 1 14.0113 10.3321 1.8037 27 6 5.9332 4.2149 2.6250 28 7 3.5537 -0.8248 -0.0016 29 6 2.2411 -1.0918 -0.0005 30 8 1.7945 -2.2226 -0.0058 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5142 0.8898 33 1 -0.3633 0.5135 -0.8901 34 1 2.1407 1.7933 0.8963 35 1 2.1415 1.7955 -0.8948 36 1 5.0614 2.8543 0.4994 37 1 7.8946 2.5824 3.2507 38 1 7.7061 1.9800 1.5469 39 1 8.7765 4.5975 3.0883 40 1 9.6976 4.4286 0.8457 41 1 8.7137 5.8497 0.4206 42 1 11.3186 6.4183 0.0251 43 1 14.0233 7.9149 -1.2339 44 1 5.1370 4.7611 2.1191 45 1 6.0831 4.5420 3.6540 46 1 4.2620 -1.4876 -0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266609886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -49.915006 kcal Electronic energy + Delta-G solvation = -28393.240523 eV Core-core repulsion = 24126.459011 eV Total energy + Delta-G solvation = -4266.781512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.85019 -40.35227 -38.84171 -38.03389 -36.61663 -34.76174 -34.55397 -33.90758 -32.64032 -31.23573 -29.89534 -27.79116 -26.87597 -25.90203 -24.88971 -24.16176 -22.87167 -21.39220 -21.02410 -19.90043 -19.19835 -18.30647 -18.13529 -17.91505 -16.84235 -16.62682 -16.14209 -15.91220 -15.43060 -15.41155 -15.03257 -14.75289 -14.55323 -14.47427 -14.34701 -14.16315 -13.95653 -13.79857 -13.30436 -13.02451 -12.89495 -12.84623 -12.67866 -12.50504 -12.24237 -11.90244 -11.64165 -11.48791 -11.08435 -10.93860 -10.79223 -10.61412 -10.56430 -10.47015 -10.24567 -9.71525 -9.53838 -9.48174 -9.12755 -8.50531 -8.09016 -7.99701 -6.45516 -3.86500 1.84782 2.16666 2.38494 2.81708 3.17475 3.23492 3.27824 3.37506 3.66696 3.86246 3.99972 4.05162 4.19392 4.22609 4.32373 4.44305 4.50219 4.70491 4.74065 4.82318 4.85013 5.02023 5.10818 5.22465 5.23269 5.34452 5.39669 5.55099 5.56933 5.64154 5.71567 5.76060 5.86588 5.93702 6.13422 6.16380 6.26747 6.59815 6.92263 7.00114 7.17806 7.51486 7.58014 7.67002 8.02157 8.13233 8.57000 9.13950 9.49967 10.01292 10.72052 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.001566 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.117712 B =17874.785995 C =18156.874337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.636 5.636 3 C 0.107 3.893 4 C 0.104 3.896 5 H 0.118 0.882 6 C 0.504 3.496 7 O -0.518 6.518 8 N -0.705 5.705 9 C 0.117 3.883 10 H 0.104 0.896 11 C -0.180 4.180 12 C 0.068 3.932 13 H 0.094 0.906 14 N -0.657 5.657 15 C 0.050 3.950 16 C 0.439 3.561 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C -0.131 4.131 28 N -0.715 5.715 29 C 0.705 3.295 30 O -0.581 6.581 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.403 0.597 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.353 0.647 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.074 0.926 45 H 0.102 0.898 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.756 -11.519 -4.100 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.376 5.376 3 C -0.017 4.017 4 C -0.007 4.007 5 H 0.136 0.864 6 C 0.287 3.713 7 O -0.392 6.392 8 N -0.357 5.357 9 C 0.012 3.988 10 H 0.122 0.878 11 C -0.221 4.221 12 C -0.043 4.043 13 H 0.112 0.888 14 N -0.288 5.288 15 C -0.082 4.082 16 C 0.224 3.776 17 O -0.468 6.468 18 N -0.199 5.199 19 C -0.431 4.431 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.170 4.170 28 N -0.377 5.377 29 C 0.405 3.595 30 O -0.458 6.458 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.238 0.762 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.174 0.826 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.120 0.880 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -23.363 -11.771 -2.842 26.315 hybrid contribution 1.724 -0.185 -0.843 1.928 sum -21.639 -11.956 -3.686 24.995 Atomic orbital electron populations 1.21448 0.75172 1.04220 1.01510 1.46984 1.06530 1.05465 1.78657 1.22251 0.86046 0.89190 1.04247 1.21843 0.97303 0.83663 0.97847 0.86438 1.20754 0.79349 0.81867 0.89354 1.90779 1.59712 1.52641 1.36090 1.45687 1.53693 1.18338 1.17974 1.21822 0.92017 0.96656 0.88339 0.87769 1.24201 0.96218 0.98899 1.02733 1.23104 0.93117 0.89579 0.98537 0.88795 1.60015 1.13996 1.46050 1.08723 1.21710 0.93785 0.98239 0.94499 1.19826 0.84379 0.86031 0.87346 1.90526 1.77255 1.61614 1.17417 1.41860 1.22754 1.43512 1.11817 1.19663 1.02350 1.23590 0.97457 0.87955 1.25263 0.98928 0.98505 0.95182 1.69602 1.34632 1.45519 1.04564 0.85909 0.79929 0.80188 0.78147 1.19911 1.20968 1.19863 1.23468 0.97582 0.93164 1.02811 1.44838 1.07065 1.06024 1.79747 1.15812 0.81656 0.84692 0.77320 1.90975 1.75717 1.20877 1.58228 0.89406 0.91943 0.91840 0.89507 0.88514 0.76184 0.88705 0.91203 0.82627 0.93857 0.89662 0.77482 0.91804 0.90749 0.87968 0.72256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.61 11.21 59.84 0.67 1.28 16 2 N -0.64 -4.71 3.36 -186.74 -0.63 -5.34 16 3 C 0.11 0.44 7.32 -3.16 -0.02 0.41 16 4 C 0.10 0.53 4.16 -68.21 -0.28 0.24 16 5 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 6 C 0.50 3.84 6.94 -10.98 -0.08 3.76 16 7 O -0.52 -6.50 16.20 5.55 0.09 -6.41 16 8 N -0.70 -4.03 5.26 -53.01 -0.28 -4.31 16 9 C 0.12 0.93 4.33 -67.11 -0.29 0.64 16 10 H 0.10 1.00 7.46 -51.93 -0.39 0.61 16 11 C -0.18 -1.62 7.50 -25.92 -0.19 -1.82 16 12 C 0.07 0.66 4.05 -66.91 -0.27 0.39 16 13 H 0.09 0.79 7.87 -51.93 -0.41 0.38 16 14 N -0.66 -9.44 6.24 -107.14 -0.67 -10.11 16 15 C 0.05 0.81 6.01 -4.98 -0.03 0.78 16 16 C 0.44 9.98 7.82 -10.99 -0.09 9.90 16 17 O -0.58 -15.45 15.78 5.55 0.09 -15.37 16 18 N -0.56 -13.87 5.29 -10.97 -0.06 -13.93 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 23 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.13 -1.07 7.63 -25.92 -0.20 -1.27 16 28 N -0.72 -5.85 5.63 -59.33 -0.33 -6.19 16 29 C 0.70 7.61 8.60 -88.39 -0.76 6.85 16 30 O -0.58 -8.68 17.29 5.29 0.09 -8.59 16 31 H 0.09 0.58 7.52 -51.93 -0.39 0.19 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.09 0.33 7.73 -51.93 -0.40 -0.07 16 35 H 0.10 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.40 1.14 8.70 -40.82 -0.36 0.79 16 37 H 0.09 0.91 7.83 -51.93 -0.41 0.50 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.35 5.38 7.90 -39.29 -0.31 5.07 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 42 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.43 3.31 8.96 -40.82 -0.37 2.95 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -37.91 390.34 -8.56 -46.47 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.66 Total: 12.24 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: -1.78 Total: 13.28 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -1.24 Total: -63.19 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: 0.27 Total: -30.37 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.91 -8.56 -46.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266609886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.442 kcal (2) G-P(sol) polarization free energy of solvation -37.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds