Wall clock time and date at job start Sat Apr 11 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.47051 * 125.41081 * 2 1 4 4 C 1.54107 * 103.85994 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.54663 * 118.60254 * 4 3 2 6 6 C 1.50700 * 110.67023 * 241.34526 * 4 3 2 7 7 O 1.21285 * 120.00039 * 95.97453 * 6 4 3 8 8 N 1.34778 * 120.00373 * 275.96884 * 6 4 3 9 9 C 1.46503 * 119.99726 * 180.02562 * 8 6 4 10 10 H 1.08992 * 112.85535 * 336.19570 * 9 8 6 11 11 C 1.53784 * 113.61192 * 107.51018 * 9 8 6 12 12 C 1.53773 * 87.08440 * 89.11246 * 11 9 8 13 13 H 1.09000 * 113.61398 * 270.88141 * 12 11 9 14 14 N 1.46901 * 113.69273 * 139.99162 * 12 11 9 15 15 C 1.46896 * 110.99981 * 107.46469 * 14 12 11 16 16 C 1.50696 * 109.47209 * 180.02562 * 15 14 12 17 17 O 1.21291 * 119.99951 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00290 * 179.97438 * 16 15 14 19 19 C 1.37105 * 120.00096 * 179.97438 * 18 16 15 20 20 H 1.07991 * 120.00162 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99901 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99979 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99976 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47042 * 59.99754 * 23 21 19 25 25 H 1.48503 * 109.47102 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47266 * 299.99783 * 23 21 19 27 27 C 1.53775 * 87.08256 * 25.42900 * 12 11 9 28 28 N 1.47045 * 103.86622 * 0.02562 * 4 3 2 29 29 C 1.33952 * 125.40746 * 180.02562 * 2 1 3 30 30 O 1.21584 * 123.04486 * 0.26767 * 29 2 1 31 31 H 1.09001 * 109.47495 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46963 * 300.02244 * 1 2 3 33 33 H 1.08997 * 109.47101 * 60.02101 * 1 2 3 34 34 H 1.09002 * 110.54698 * 61.41426 * 3 2 1 35 35 H 1.08993 * 110.67734 * 298.65580 * 3 2 1 36 36 H 0.97002 * 119.99974 * 0.02562 * 8 6 4 37 37 H 1.09003 * 113.60896 * 203.65992 * 11 9 8 38 38 H 1.09002 * 113.61402 * 334.56062 * 11 9 8 39 39 H 1.00900 * 110.99537 * 343.50950 * 14 12 11 40 40 H 1.09003 * 109.46777 * 299.99888 * 15 14 12 41 41 H 1.09001 * 109.47805 * 59.99841 * 15 14 12 42 42 H 0.96997 * 120.00048 * 359.97438 * 18 16 15 43 43 H 0.96995 * 119.99784 * 180.02562 * 22 21 19 44 44 H 1.09002 * 113.61642 * 220.01949 * 27 12 11 45 45 H 1.09005 * 113.68932 * 89.13173 * 27 12 11 46 46 H 0.97002 * 125.41556 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7504 0.6324 -0.0007 5 1 4.2853 0.9466 -0.8969 6 6 4.4939 1.0656 1.2365 7 8 4.5449 0.3323 2.2012 8 7 5.1024 2.2677 1.2709 9 6 5.8257 2.6884 2.4734 10 1 5.4783 2.1835 3.3747 11 6 7.3546 2.6762 2.3085 12 6 7.2337 4.1256 1.8094 13 1 7.0805 4.2055 0.7332 14 7 8.2987 5.0100 2.3011 15 6 9.2439 5.3433 1.2272 16 6 10.3198 6.2492 1.7682 17 8 10.3007 6.5846 2.9337 18 7 11.3032 6.6868 0.9571 19 6 12.2817 7.5114 1.4492 20 1 12.2643 7.8107 2.4867 21 6 13.2952 7.9630 0.6128 22 7 13.3156 7.6000 -0.6501 23 14 14.6289 9.0859 1.2834 24 1 15.3511 8.3954 2.3820 25 1 15.5848 9.4224 0.1979 26 1 14.0113 10.3321 1.8037 27 6 5.9332 4.2149 2.6250 28 7 3.5537 -0.8248 -0.0016 29 6 2.2411 -1.0918 -0.0005 30 8 1.7945 -2.2226 -0.0058 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5142 0.8898 33 1 -0.3633 0.5135 -0.8901 34 1 2.1407 1.7933 0.8963 35 1 2.1415 1.7955 -0.8948 36 1 5.0614 2.8543 0.4994 37 1 7.8946 2.5824 3.2507 38 1 7.7061 1.9800 1.5469 39 1 8.7765 4.5975 3.0883 40 1 9.6976 4.4286 0.8457 41 1 8.7137 5.8497 0.4206 42 1 11.3186 6.4183 0.0251 43 1 14.0233 7.9149 -1.2339 44 1 5.1370 4.7611 2.1191 45 1 6.0831 4.5420 3.6540 46 1 4.2620 -1.4876 -0.0026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266609886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:51 Heat of formation + Delta-G solvation = -83.889698 kcal Electronic energy + Delta-G solvation = -28394.713776 eV Core-core repulsion = 24126.459011 eV Total energy + Delta-G solvation = -4268.254765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.44068 -41.07475 -40.11188 -39.32380 -37.38767 -36.11392 -35.42122 -35.09445 -33.61456 -33.16891 -30.42683 -28.51954 -28.07284 -26.60504 -26.18285 -25.08215 -23.74166 -21.99693 -21.62206 -21.14948 -20.44498 -19.86746 -18.89729 -18.69755 -17.80529 -17.43805 -17.12478 -16.86890 -16.49554 -16.33018 -16.10259 -16.06149 -15.62200 -15.53233 -15.18645 -15.11698 -14.87886 -14.50478 -14.36360 -14.25257 -13.57807 -13.50508 -13.43675 -13.38853 -13.20833 -13.09276 -12.94935 -12.80575 -12.57133 -12.41652 -12.11682 -11.72624 -11.58439 -11.48880 -11.39643 -11.30141 -10.42328 -10.30773 -10.11430 -9.99783 -9.59108 -9.19588 -8.45482 -5.93960 1.29149 1.40834 1.43095 1.53511 1.61154 1.80780 2.08048 2.14557 2.30521 2.91428 2.99108 3.22186 3.27451 3.47733 3.52630 3.65246 3.76203 3.90874 4.01173 4.11967 4.13277 4.35740 4.50360 4.55029 4.55928 4.61503 4.64910 4.73031 4.84966 4.86206 4.89149 4.95006 5.00473 5.07529 5.18129 5.42134 5.54218 5.61477 5.95802 5.99443 6.20824 6.33192 6.43001 6.51315 6.62255 7.14413 7.16313 7.42278 7.58736 8.14383 8.71458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030657 B = 0.001566 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.117712 B =17874.785995 C =18156.874337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.105 3.895 4 C 0.108 3.892 5 H 0.164 0.836 6 C 0.505 3.495 7 O -0.574 6.574 8 N -0.686 5.686 9 C 0.127 3.873 10 H 0.085 0.915 11 C -0.178 4.178 12 C 0.068 3.932 13 H 0.119 0.881 14 N -0.672 5.672 15 C 0.066 3.934 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.336 4.336 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.122 4.122 28 N -0.717 5.717 29 C 0.690 3.310 30 O -0.637 6.637 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.141 0.859 36 H 0.423 0.577 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.344 0.656 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.496 -10.129 -6.087 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.376 5.376 3 C -0.017 4.017 4 C -0.001 4.001 5 H 0.181 0.819 6 C 0.290 3.710 7 O -0.452 6.452 8 N -0.339 5.339 9 C 0.020 3.980 10 H 0.103 0.897 11 C -0.219 4.219 12 C -0.042 4.042 13 H 0.137 0.863 14 N -0.303 5.303 15 C -0.066 4.066 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.210 5.210 19 C -0.466 4.466 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.161 4.161 28 N -0.377 5.377 29 C 0.390 3.610 30 O -0.519 6.519 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.159 0.841 36 H 0.261 0.739 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.164 0.836 40 H 0.083 0.917 41 H 0.128 0.872 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.107 0.893 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -24.117 -10.312 -4.888 26.681 hybrid contribution 1.916 -0.606 -0.171 2.017 sum -22.201 -10.918 -5.060 25.252 Atomic orbital electron populations 1.21616 0.74205 1.03414 1.03582 1.47190 1.07334 1.05643 1.77427 1.22605 0.84369 0.88093 1.06667 1.22170 0.98323 0.81689 0.97927 0.81914 1.21250 0.78792 0.81541 0.89408 1.90772 1.61844 1.54322 1.38294 1.45492 1.52433 1.18064 1.17865 1.21568 0.91378 0.96356 0.88671 0.89684 1.24147 0.96898 0.98594 1.02255 1.23310 0.92010 0.88842 1.00064 0.86270 1.60055 1.14170 1.47904 1.08203 1.21586 0.92306 0.97624 0.95107 1.21034 0.84678 0.85441 0.86612 1.90495 1.78292 1.63060 1.19425 1.41932 1.23068 1.43794 1.12254 1.19627 1.04371 1.25664 0.96890 0.90435 1.25998 1.00356 0.99364 0.95403 1.69656 1.35267 1.45912 1.05146 0.85015 0.77437 0.78225 0.77827 1.19864 1.19504 1.19748 1.23372 0.97307 0.93260 1.02125 1.44902 1.06237 1.07715 1.78845 1.16212 0.82648 0.84769 0.77411 1.90917 1.76857 1.23279 1.60854 0.91713 0.90547 0.88990 0.88964 0.84132 0.73871 0.89903 0.91001 0.83645 0.91676 0.87231 0.76907 0.91312 0.88600 0.89311 0.72441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.00 11.21 127.77 1.43 2.44 16 2 N -0.64 -8.33 3.36 -863.45 -2.90 -11.23 16 3 C 0.11 0.46 7.32 86.65 0.63 1.09 16 4 C 0.11 0.75 4.16 44.52 0.19 0.94 16 5 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 6 C 0.51 6.57 6.94 87.66 0.61 7.18 16 7 O -0.57 -14.21 16.20 -3.04 -0.05 -14.26 16 8 N -0.69 -5.59 5.26 -440.03 -2.32 -7.91 16 9 C 0.13 1.76 4.33 45.52 0.20 1.96 16 10 H 0.08 1.59 7.46 -2.39 -0.02 1.57 16 11 C -0.18 -2.91 7.50 31.12 0.23 -2.68 16 12 C 0.07 1.12 4.05 45.44 0.18 1.30 16 13 H 0.12 1.41 7.87 -2.39 -0.02 1.39 16 14 N -0.67 -18.20 6.24 -492.88 -3.08 -21.28 16 15 C 0.07 2.00 6.01 85.56 0.51 2.51 16 16 C 0.43 19.71 7.82 87.66 0.69 20.40 16 17 O -0.63 -33.74 15.78 -3.06 -0.05 -33.78 16 18 N -0.57 -28.35 5.29 -306.99 -1.62 -29.98 16 19 C -0.34 -18.70 9.68 84.04 0.81 -17.88 16 20 H 0.08 4.62 7.16 -2.92 -0.02 4.60 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.31 13.05 21.66 0.28 -48.03 16 23 Si 0.99 42.09 29.55 68.60 2.03 44.12 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 C -0.12 -1.68 7.63 31.12 0.24 -1.44 16 28 N -0.72 -11.07 5.63 -460.35 -2.59 -13.66 16 29 C 0.69 14.79 8.60 179.57 1.55 16.34 16 30 O -0.64 -20.02 17.29 -3.98 -0.07 -20.09 16 31 H 0.06 0.89 7.52 -2.39 -0.02 0.87 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.09 0.36 7.73 -2.39 -0.02 0.34 16 35 H 0.14 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.42 0.29 8.70 -92.71 -0.81 -0.52 16 37 H 0.08 1.57 7.83 -2.39 -0.02 1.55 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.34 10.34 7.90 -89.69 -0.71 9.63 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 42 H 0.40 18.45 7.90 -92.71 -0.73 17.72 16 43 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 44 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 46 H 0.43 6.58 8.96 -92.71 -0.83 5.75 16 Total: -1.00 -87.31 390.34 -4.64 -91.95 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -2.02 Total: 32.11 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 7.74 Total: 32.03 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -12.22 Total: -132.07 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: -0.17 Total: -68.14 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -87.31 -4.64 -91.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266609886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.060 kcal (2) G-P(sol) polarization free energy of solvation -87.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds