Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99838 * 2 1 4 4 H 1.07994 * 120.00048 * 204.07617 * 3 2 1 5 5 C 1.38814 * 119.99970 * 24.08587 * 3 2 1 6 6 N 1.31613 * 119.99994 * 9.22031 * 5 3 2 7 7 Si 1.86796 * 119.99780 * 189.23121 * 5 3 2 8 8 H 1.48501 * 109.47486 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47615 * 119.99895 * 7 5 3 10 10 H 1.48507 * 109.46769 * 239.99656 * 7 5 3 11 11 C 1.46504 * 119.99852 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47247 * 89.99766 * 11 2 1 13 13 H 1.08998 * 110.91434 * 51.09535 * 12 11 2 14 14 C 1.55156 * 111.00105 * 174.99420 * 12 11 2 15 15 C 1.54336 * 103.09834 * 153.48680 * 14 12 11 16 16 N 1.47314 * 107.11872 * 338.02775 * 15 14 12 17 17 C 1.34774 * 125.61546 * 178.82118 * 16 15 14 18 18 O 1.21587 * 120.00549 * 174.92835 * 17 16 15 19 19 C 1.47559 * 119.99932 * 354.92413 * 17 16 15 20 20 C 1.38694 * 120.38501 * 48.50856 * 19 17 16 21 21 C 1.38974 * 120.53378 * 180.02562 * 20 19 17 22 22 C 1.36210 * 121.23821 * 359.97438 * 21 20 19 23 23 C 1.40720 * 120.20192 * 359.97438 * 22 21 20 24 24 N 1.33682 * 120.94453 * 180.02562 * 23 22 21 25 25 C 1.31080 * 121.33629 * 179.23871 * 24 23 22 26 26 C 1.39340 * 121.70630 * 0.77665 * 25 24 23 27 27 C 1.36679 * 119.86736 * 359.48171 * 26 25 24 28 28 C 1.40472 * 118.16516 * 359.97438 * 27 26 25 29 29 C 1.47425 * 108.73990 * 358.69653 * 16 15 14 30 30 H 1.09002 * 109.47067 * 274.75183 * 1 2 3 31 31 H 1.08996 * 109.47406 * 34.75852 * 1 2 3 32 32 H 1.08998 * 109.47082 * 154.75620 * 1 2 3 33 33 H 0.97004 * 120.00021 * 180.02562 * 6 5 3 34 34 H 1.08998 * 109.46959 * 329.99432 * 11 2 1 35 35 H 1.08998 * 109.46542 * 209.99499 * 11 2 1 36 36 H 1.08995 * 110.72704 * 271.93850 * 14 12 11 37 37 H 1.09001 * 110.71981 * 35.04087 * 14 12 11 38 38 H 1.09002 * 109.88042 * 97.31718 * 15 14 12 39 39 H 1.08999 * 109.87781 * 218.47837 * 15 14 12 40 40 H 1.08001 * 119.73285 * 0.02562 * 20 19 17 41 41 H 1.07996 * 119.38254 * 180.02562 * 21 20 19 42 42 H 1.07995 * 119.89837 * 179.97438 * 22 21 20 43 43 H 1.08003 * 119.14362 * 180.25511 * 25 24 23 44 44 H 1.08001 * 120.06333 * 179.46171 * 26 25 24 45 45 H 1.07995 * 120.91443 * 180.02562 * 27 26 25 46 46 H 1.09004 * 110.36656 * 265.44779 * 29 16 15 47 47 H 1.08998 * 110.45880 * 143.16995 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1591 1.2266 -0.3815 5 6 1.5462 2.3357 0.4906 6 7 0.3928 2.2565 1.1195 7 14 2.3711 3.9954 0.2579 8 1 3.6497 3.8144 -0.4752 9 1 1.4758 4.8885 -0.5206 10 1 2.6438 4.6030 1.5853 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4432 13 1 2.9021 -0.9037 -2.0229 14 6 3.3348 -2.9854 -1.4870 15 6 2.9288 -3.6458 -2.8216 16 7 1.5946 -3.1294 -3.1728 17 6 0.8974 -3.4460 -4.2818 18 8 -0.2364 -3.0312 -4.4264 19 6 1.5101 -4.2960 -5.3209 20 6 2.1454 -5.4792 -4.9745 21 6 2.7239 -6.2818 -5.9505 22 6 2.6841 -5.9333 -7.2667 23 6 2.0492 -4.7421 -7.6646 24 7 2.0008 -4.3859 -8.9522 25 6 1.3987 -3.2857 -9.3330 26 6 0.7947 -2.4268 -8.4170 27 6 0.8130 -2.7307 -7.0845 28 6 1.4500 -3.9168 -6.6837 29 6 1.1470 -2.2116 -2.1094 30 1 -0.3633 0.0851 1.0242 31 1 -0.3634 0.8442 -0.5859 32 1 -0.3633 -0.9295 -0.4383 33 1 -0.0291 3.0600 1.4620 34 1 1.6084 -2.0286 0.5130 35 1 3.1499 -1.1386 0.5133 36 1 4.3926 -2.7227 -1.4929 37 1 3.1064 -3.6413 -0.6470 38 1 3.6449 -3.3806 -3.5993 39 1 2.8914 -4.7287 -2.7029 40 1 2.1910 -5.7792 -3.9381 41 1 3.2136 -7.1995 -5.6601 42 1 3.1411 -6.5730 -8.0070 43 1 1.3774 -3.0341 -10.3831 44 1 0.3133 -1.5226 -8.7592 45 1 0.3498 -2.0773 -6.3600 46 1 0.5310 -2.7430 -1.3840 47 1 0.5932 -1.3753 -2.5361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267587454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = 33.647018 kcal Electronic energy + Delta-G solvation = -28984.145872 eV Core-core repulsion = 25131.837145 eV Total energy + Delta-G solvation = -3852.308727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -42.17393 -40.89334 -38.97972 -37.94502 -37.12317 -34.53037 -33.98623 -32.45568 -31.64231 -31.20047 -30.00382 -28.20171 -27.31601 -25.76127 -24.84054 -24.58472 -23.38461 -22.83205 -21.24499 -20.59809 -19.42307 -18.64392 -18.36478 -18.10414 -17.57653 -17.12199 -16.81299 -16.49999 -15.82006 -15.65283 -15.47016 -15.34884 -15.20125 -14.91023 -14.55808 -14.44872 -14.27067 -14.14707 -13.82037 -13.67323 -13.34596 -13.07011 -12.98379 -12.84168 -12.78009 -12.59667 -12.49077 -12.37210 -12.11337 -12.01637 -11.80480 -11.66426 -11.59397 -11.44556 -11.30743 -10.64812 -10.53533 -9.86237 -9.79110 -9.34340 -8.75167 -7.81820 -5.32452 -0.86894 -0.24863 0.64184 1.44221 1.45843 1.47658 1.55589 1.77682 2.00625 2.49909 3.01257 3.21539 3.28168 3.32453 3.56215 3.68093 3.71283 3.74399 3.76876 3.88058 3.94505 4.06850 4.10019 4.27711 4.36874 4.41737 4.48017 4.61283 4.67642 4.71991 4.73092 4.77887 4.88237 4.89406 4.97620 4.99644 5.03052 5.05963 5.18244 5.24427 5.24807 5.29633 5.36904 5.47271 5.49995 5.63592 5.70662 5.75037 6.34271 6.37748 6.79407 6.91172 7.16009 7.88374 8.32580 9.21273 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.002689 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.921602 B =10408.925067 C =11283.925806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.620 5.620 3 C -0.256 4.256 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.967 3.033 8 H -0.264 1.264 9 H -0.297 1.297 10 H -0.291 1.291 11 C 0.161 3.839 12 C -0.109 4.109 13 H 0.059 0.941 14 C -0.115 4.115 15 C 0.095 3.905 16 N -0.609 5.609 17 C 0.566 3.434 18 O -0.581 6.581 19 C -0.126 4.126 20 C -0.066 4.066 21 C -0.094 4.094 22 C -0.075 4.075 23 C 0.102 3.898 24 N -0.489 5.489 25 C 0.132 3.868 26 C -0.166 4.166 27 C -0.082 4.082 28 C -0.088 4.088 29 C 0.124 3.876 30 H 0.004 0.996 31 H 0.007 0.993 32 H 0.025 0.975 33 H 0.246 0.754 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.160 0.840 41 H 0.182 0.818 42 H 0.161 0.839 43 H 0.198 0.802 44 H 0.164 0.836 45 H 0.121 0.879 46 H 0.067 0.933 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.796 -20.529 -16.570 27.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.343 5.343 3 C -0.387 4.387 4 H 0.091 0.909 5 C -0.252 4.252 6 N -0.589 5.589 7 Si 0.795 3.205 8 H -0.188 1.188 9 H -0.224 1.224 10 H -0.217 1.217 11 C 0.035 3.965 12 C -0.131 4.131 13 H 0.078 0.922 14 C -0.153 4.153 15 C -0.026 4.026 16 N -0.341 5.341 17 C 0.356 3.644 18 O -0.463 6.463 19 C -0.130 4.130 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.093 4.093 23 C -0.019 4.019 24 N -0.197 5.197 25 C -0.041 4.041 26 C -0.185 4.185 27 C -0.108 4.108 28 C -0.091 4.091 29 C 0.002 3.998 30 H 0.022 0.978 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.178 0.822 41 H 0.199 0.801 42 H 0.179 0.821 43 H 0.215 0.785 44 H 0.181 0.819 45 H 0.139 0.861 46 H 0.085 0.915 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.527 -20.839 -17.160 28.310 hybrid contribution -0.974 2.423 0.782 2.726 sum 7.553 -18.417 -16.378 25.777 Atomic orbital electron populations 1.20500 0.83352 0.95318 0.97281 1.44138 1.01804 1.02021 1.86301 1.19556 0.98867 0.87079 1.33157 0.90889 1.25845 0.98427 1.02040 0.98864 1.70234 1.19240 1.27574 1.41862 0.85205 0.78133 0.80135 0.77009 1.18816 1.22379 1.21747 1.20865 0.96214 0.86599 0.92827 1.22929 0.94071 0.97421 0.98693 0.92205 1.22698 1.00800 0.95120 0.96700 1.22555 0.82045 1.00129 0.97856 1.48716 1.20044 1.45214 1.20118 1.18285 0.84695 0.80284 0.81098 1.90775 1.19834 1.56442 1.79214 1.19756 1.03335 0.98326 0.91534 1.21840 0.92806 0.91639 1.02172 1.21265 0.98074 1.00771 0.91171 1.21332 0.96529 0.93640 0.97842 1.19186 0.98144 0.96087 0.88473 1.68124 1.17395 1.17899 1.16306 1.23591 0.90245 0.88321 1.01923 1.22292 1.00843 1.02510 0.92871 1.21723 0.95642 0.95479 0.97955 1.18751 1.00245 0.96666 0.93419 1.22168 0.97685 0.91426 0.88529 0.97756 0.97367 0.95700 0.94451 0.92799 0.92215 0.88024 0.88473 0.90536 0.87769 0.82248 0.80093 0.82136 0.78494 0.81876 0.86123 0.91511 0.94278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.23 8.73 127.77 1.12 10.35 16 2 N -0.62 -30.65 2.89 -726.94 -2.10 -32.75 16 3 C -0.26 -13.95 9.66 84.03 0.81 -13.14 16 4 H 0.07 3.81 7.84 -2.91 -0.02 3.79 16 5 C -0.06 -3.24 5.17 84.86 0.44 -2.80 16 6 N -0.94 -56.84 10.57 21.65 0.23 -56.61 16 7 Si 0.97 45.58 29.56 68.60 2.03 47.61 16 8 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 C 0.16 5.95 5.15 86.38 0.45 6.40 16 12 C -0.11 -3.37 3.26 -9.40 -0.03 -3.41 16 13 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.11 -2.21 6.41 31.79 0.20 -2.01 16 15 C 0.10 1.74 5.68 86.68 0.49 2.24 16 16 N -0.61 -17.18 3.33 -814.75 -2.72 -19.89 16 17 C 0.57 17.99 6.84 86.70 0.59 18.58 16 18 O -0.58 -23.56 15.61 -3.99 -0.06 -23.63 16 19 C -0.13 -3.17 5.42 -19.88 -0.11 -3.27 16 20 C -0.07 -1.06 8.51 22.56 0.19 -0.87 16 21 C -0.09 -1.07 9.92 21.97 0.22 -0.85 16 22 C -0.07 -1.17 9.96 22.40 0.22 -0.95 16 23 C 0.10 2.33 6.60 40.27 0.27 2.60 16 24 N -0.49 -10.83 10.34 -188.67 -1.95 -12.79 16 25 C 0.13 2.38 11.15 85.07 0.95 3.33 16 26 C -0.17 -3.38 10.03 22.17 0.22 -3.16 16 27 C -0.08 -2.25 9.25 22.45 0.21 -2.05 16 28 C -0.09 -2.35 5.76 -21.10 -0.12 -2.47 16 29 C 0.12 4.15 5.02 86.85 0.44 4.59 16 30 H 0.00 0.23 7.35 -2.39 -0.02 0.21 16 31 H 0.01 0.43 7.29 -2.39 -0.02 0.41 16 32 H 0.02 1.10 6.54 -2.39 -0.02 1.09 16 33 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 34 H 0.05 1.83 7.89 -2.39 -0.02 1.82 16 35 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.54 8.04 -2.39 -0.02 1.52 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.20 6.08 -2.39 -0.01 1.18 16 40 H 0.16 1.71 6.03 -2.91 -0.02 1.69 16 41 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 42 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 45 H 0.12 3.89 6.27 -2.91 -0.02 3.88 16 46 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 47 H 0.04 1.62 8.05 -2.39 -0.02 1.60 16 Total: -1.00 -78.59 378.13 2.96 -75.63 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.98 Total: 9.32 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.55 Total: 13.11 kcal Atomic # 7 Polarization: -115.50 SS G_CDS: -6.54 Total: -122.04 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.63 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -78.59 2.96 -75.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267587454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.276 kcal (2) G-P(sol) polarization free energy of solvation -78.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds