Wall clock time and date at job start Sat Apr 11 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46512 * 119.99723 * 2 1 4 4 C 1.53004 * 109.46952 * 270.00036 * 3 2 1 5 5 C 1.52998 * 109.46948 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47017 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99991 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47429 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99487 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00295 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99840 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00409 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99663 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00218 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99791 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47149 * 60.00065 * 15 13 11 17 17 H 1.48501 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47302 * 299.99826 * 15 13 11 19 19 C 1.34774 * 120.00608 * 180.02562 * 2 1 3 20 20 O 1.21733 * 120.00275 * 187.89559 * 19 2 1 21 21 C 1.46382 * 119.99705 * 7.89467 * 19 2 1 22 22 C 1.36722 * 126.82472 * 353.33365 * 21 19 2 23 23 N 1.33221 * 107.96295 * 179.97438 * 22 21 19 24 24 C 1.31534 * 109.76109 * 359.97438 * 23 22 21 25 25 O 1.35207 * 125.49688 * 180.02562 * 24 23 22 26 26 N 1.34953 * 109.01520 * 0.02562 * 24 23 22 27 27 C 1.46499 * 126.54190 * 180.25869 * 26 24 23 28 28 H 1.09005 * 109.46976 * 246.73717 * 1 2 3 29 29 H 1.08994 * 109.47503 * 6.73694 * 1 2 3 30 30 H 1.09005 * 109.47316 * 126.73959 * 1 2 3 31 31 H 1.08998 * 109.46985 * 30.00329 * 3 2 1 32 32 H 1.08998 * 109.46899 * 150.00180 * 3 2 1 33 33 H 1.08995 * 109.47013 * 299.99962 * 4 3 2 34 34 H 1.09007 * 109.47015 * 60.00270 * 4 3 2 35 35 H 1.08998 * 109.47160 * 300.00397 * 5 4 3 36 36 H 1.08998 * 109.46728 * 60.00251 * 5 4 3 37 37 H 1.00891 * 111.00099 * 56.04501 * 6 5 4 38 38 H 1.09001 * 109.47266 * 300.00158 * 7 6 5 39 39 H 1.09003 * 109.47373 * 59.99731 * 7 6 5 40 40 H 0.96996 * 119.99724 * 0.02562 * 10 8 7 41 41 H 0.97002 * 119.99581 * 179.97438 * 14 13 11 42 42 H 1.08001 * 126.02131 * 359.96676 * 22 21 19 43 43 H 0.96700 * 114.00073 * 270.00745 * 25 24 23 44 44 H 1.08998 * 109.47545 * 264.20524 * 27 26 24 45 45 H 1.09002 * 109.47448 * 24.21231 * 27 26 24 46 46 H 1.09002 * 109.47026 * 144.20654 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0359 -1.4425 6 7 3.4610 3.4603 -2.8275 7 6 4.1952 4.7320 -2.8668 8 6 4.4273 5.1341 -4.3005 9 8 4.0215 4.4302 -5.2010 10 7 5.0858 6.2759 -4.5820 11 6 5.2964 6.6419 -5.8863 12 1 4.9344 6.0155 -6.6882 13 6 5.9758 7.8187 -6.1765 14 7 6.4168 8.5806 -5.2008 15 14 6.2622 8.3178 -7.9537 16 1 4.9549 8.4798 -8.6392 17 1 7.0040 9.6036 -7.9933 18 1 7.0549 7.2671 -8.6414 19 6 2.1389 -1.1671 -0.0005 20 8 3.3476 -1.1721 0.1443 21 6 1.4175 -2.4288 -0.1752 22 6 0.0616 -2.5978 -0.2216 23 7 -0.1851 -3.8957 -0.3928 24 6 0.9489 -4.5590 -0.4580 25 8 1.0682 -5.8950 -0.6282 26 7 1.9741 -3.6912 -0.3277 27 6 3.4019 -4.0182 -0.3496 28 1 -0.3633 -0.4059 0.9442 29 1 -0.3634 1.0205 -0.1205 30 1 -0.3634 -0.6147 -0.8236 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1385 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.4999 1.8409 -1.9564 35 1 2.6273 3.7953 -0.9288 36 1 4.1692 2.9060 -0.9286 37 1 2.5965 3.5254 -3.3436 38 1 3.6131 5.5033 -2.3624 39 1 5.1546 4.6134 -2.3632 40 1 5.4106 6.8386 -3.8618 41 1 6.8914 9.4020 -5.4036 42 1 -0.6792 -1.8167 -0.1345 43 1 1.0871 -6.3967 0.1983 44 1 3.7641 -4.1334 0.6720 45 1 3.5531 -4.9493 -0.8958 46 1 3.9511 -3.2153 -0.8413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716559886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:38 Heat of formation + Delta-G solvation = -18.964724 kcal Electronic energy + Delta-G solvation = -28264.317252 eV Core-core repulsion = 23998.877846 eV Total energy + Delta-G solvation = -4265.439407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75053 -39.99086 -38.29503 -37.83147 -36.74566 -35.66527 -34.42118 -33.87490 -32.28206 -31.18812 -29.72654 -28.12890 -27.27424 -26.90679 -25.07384 -23.66977 -22.58525 -22.12206 -21.46380 -19.89627 -19.19849 -19.00002 -17.86946 -17.55273 -17.17429 -16.73218 -16.43035 -15.95319 -15.69840 -15.39925 -14.85021 -14.72856 -14.60417 -14.44180 -14.24852 -14.05828 -13.58479 -13.43734 -13.37567 -13.17921 -13.15394 -12.75740 -12.66396 -12.20458 -12.05527 -11.78969 -11.69949 -11.47268 -11.37689 -11.02095 -10.79682 -10.72984 -10.43224 -10.27956 -10.22006 -10.19971 -9.48819 -9.11989 -8.93357 -8.44598 -8.03903 -7.94403 -6.40404 -3.81230 0.73655 1.69600 2.15194 2.64859 2.87627 3.21242 3.26652 3.31309 3.32698 3.92498 3.98290 4.11765 4.31324 4.34789 4.47699 4.61406 4.74081 4.76636 4.79694 4.89551 5.05589 5.12171 5.12432 5.21054 5.22765 5.25559 5.36474 5.43249 5.50708 5.64596 5.79664 5.87648 5.93506 5.99636 6.01760 6.07005 6.23810 6.29799 6.87030 6.99228 7.23919 7.30692 7.56262 7.68210 7.71760 8.07603 8.62887 9.19137 9.55734 10.07472 10.77261 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.001580 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.083553 B =17716.903963 C =18131.840795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.601 5.601 3 C 0.119 3.881 4 C -0.133 4.133 5 C 0.063 3.937 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.102 0.898 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.595 3.405 20 O -0.538 6.538 21 C -0.077 4.077 22 C 0.031 3.969 23 N -0.488 5.488 24 C 0.396 3.604 25 O -0.440 6.440 26 N -0.428 5.428 27 C 0.068 3.932 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.348 0.652 38 H 0.043 0.957 39 H 0.086 0.914 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.207 0.793 43 H 0.405 0.595 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.125 -21.703 18.582 31.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.334 5.334 3 C -0.003 4.003 4 C -0.172 4.172 5 C -0.067 4.067 6 N -0.302 5.302 7 C -0.081 4.081 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.383 3.617 20 O -0.416 6.416 21 C -0.193 4.193 22 C -0.123 4.123 23 N -0.217 5.217 24 C 0.097 3.903 25 O -0.240 6.240 26 N -0.120 5.120 27 C -0.074 4.074 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.223 0.777 43 H 0.263 0.737 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.631 -22.775 17.302 30.876 hybrid contribution 0.547 1.345 0.333 1.489 sum -11.084 -21.430 17.635 29.885 Atomic orbital electron populations 1.22503 0.79373 1.04400 1.02204 1.47387 1.07129 1.05448 1.73404 1.21573 0.98070 0.83057 0.97594 1.21923 1.00949 0.98128 0.96182 1.21846 0.99566 0.94845 0.90429 1.60015 1.27424 1.31026 1.11766 1.21666 0.99386 0.90297 0.96791 1.19828 0.84397 0.83416 0.89782 1.90522 1.55060 1.53590 1.47599 1.41854 1.49623 1.19808 1.08758 1.19661 1.33716 1.05575 0.84016 0.87983 1.25262 0.96873 0.96044 0.99761 1.69609 1.38456 1.14313 1.31975 0.85910 0.78592 0.77679 0.81983 1.19937 1.20979 1.19891 1.16607 0.86141 0.82085 0.76851 1.90842 1.13684 1.87073 1.49988 1.20544 0.94047 0.86115 1.18571 1.23803 0.93324 0.93736 1.01450 1.70385 1.24049 1.05688 1.21572 1.20293 0.82545 0.84095 1.03397 1.84822 1.93987 1.10027 1.35201 1.45656 1.08643 1.06434 1.51288 1.22263 0.76761 1.03964 1.04408 0.91240 0.89649 0.90053 0.89942 0.89173 0.90545 0.91663 0.95466 0.90897 0.83231 0.93882 0.89590 0.77449 0.91841 0.77698 0.73743 0.89831 0.89025 0.87909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 8.63 59.84 0.52 0.78 16 2 N -0.60 -4.95 2.87 -183.23 -0.53 -5.48 16 3 C 0.12 1.00 5.42 -4.03 -0.02 0.97 16 4 C -0.13 -1.39 5.80 -26.73 -0.15 -1.55 16 5 C 0.06 0.76 5.69 -3.83 -0.02 0.73 16 6 N -0.67 -11.03 6.12 -115.06 -0.70 -11.73 16 7 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 8 C 0.44 10.60 7.82 -10.99 -0.09 10.51 16 9 O -0.58 -16.18 15.78 5.55 0.09 -16.10 16 10 N -0.56 -14.49 5.29 -10.96 -0.06 -14.54 16 11 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 12 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 14 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 15 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.59 6.42 7.61 -12.99 -0.10 6.32 16 20 O -0.54 -7.35 14.70 5.16 0.08 -7.27 16 21 C -0.08 -0.76 6.85 -81.98 -0.56 -1.32 16 22 C 0.03 0.27 9.89 -17.50 -0.17 0.09 16 23 N -0.49 -5.11 11.22 -14.62 -0.16 -5.28 16 24 C 0.40 3.72 9.01 -89.59 -0.81 2.91 16 25 O -0.44 -2.96 13.44 -17.32 -0.23 -3.20 16 26 N -0.43 -4.00 3.20 -122.12 -0.39 -4.39 16 27 C 0.07 0.48 10.45 59.85 0.63 1.11 16 28 H 0.07 0.21 7.39 -51.93 -0.38 -0.17 16 29 H 0.08 0.26 7.86 -51.93 -0.41 -0.15 16 30 H 0.08 0.35 5.49 -51.93 -0.29 0.06 16 31 H 0.08 0.49 7.98 -51.93 -0.41 0.07 16 32 H 0.09 0.88 7.33 -51.93 -0.38 0.49 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.35 5.84 8.43 -39.30 -0.33 5.51 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.21 1.08 4.12 -52.49 -0.22 0.86 16 43 H 0.41 0.52 9.06 45.56 0.41 0.93 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.47 8.02 -51.93 -0.42 0.05 16 46 H 0.10 0.91 6.99 -51.93 -0.36 0.55 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -37.79 388.07 -7.00 -44.78 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.58 Total: 11.77 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -1.05 Total: 13.33 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -1.12 Total: -65.38 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.79 -7.00 -44.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716559886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.819 kcal (2) G-P(sol) polarization free energy of solvation -37.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds