Wall clock time and date at job start Sat Apr 11 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46512 * 119.99723 * 2 1 4 4 C 1.53004 * 109.46952 * 270.00036 * 3 2 1 5 5 C 1.52998 * 109.46948 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47017 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99991 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47429 * 179.97438 * 7 6 5 9 9 O 1.21292 * 119.99487 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00295 * 179.97438 * 8 7 6 11 11 C 1.37096 * 119.99840 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00409 * 0.02562 * 11 10 8 13 13 C 1.38948 * 119.99663 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00218 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99791 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47149 * 60.00065 * 15 13 11 17 17 H 1.48501 * 109.46943 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47302 * 299.99826 * 15 13 11 19 19 C 1.34774 * 120.00608 * 180.02562 * 2 1 3 20 20 O 1.21733 * 120.00275 * 187.89559 * 19 2 1 21 21 C 1.46382 * 119.99705 * 7.89467 * 19 2 1 22 22 C 1.36722 * 126.82472 * 353.33365 * 21 19 2 23 23 N 1.33221 * 107.96295 * 179.97438 * 22 21 19 24 24 C 1.31534 * 109.76109 * 359.97438 * 23 22 21 25 25 O 1.35207 * 125.49688 * 180.02562 * 24 23 22 26 26 N 1.34953 * 109.01520 * 0.02562 * 24 23 22 27 27 C 1.46499 * 126.54190 * 180.25869 * 26 24 23 28 28 H 1.09005 * 109.46976 * 246.73717 * 1 2 3 29 29 H 1.08994 * 109.47503 * 6.73694 * 1 2 3 30 30 H 1.09005 * 109.47316 * 126.73959 * 1 2 3 31 31 H 1.08998 * 109.46985 * 30.00329 * 3 2 1 32 32 H 1.08998 * 109.46899 * 150.00180 * 3 2 1 33 33 H 1.08995 * 109.47013 * 299.99962 * 4 3 2 34 34 H 1.09007 * 109.47015 * 60.00270 * 4 3 2 35 35 H 1.08998 * 109.47160 * 300.00397 * 5 4 3 36 36 H 1.08998 * 109.46728 * 60.00251 * 5 4 3 37 37 H 1.00891 * 111.00099 * 56.04501 * 6 5 4 38 38 H 1.09001 * 109.47266 * 300.00158 * 7 6 5 39 39 H 1.09003 * 109.47373 * 59.99731 * 7 6 5 40 40 H 0.96996 * 119.99724 * 0.02562 * 10 8 7 41 41 H 0.97002 * 119.99581 * 179.97438 * 14 13 11 42 42 H 1.08001 * 126.02131 * 359.96676 * 22 21 19 43 43 H 0.96700 * 114.00073 * 270.00745 * 25 24 23 44 44 H 1.08998 * 109.47545 * 264.20524 * 27 26 24 45 45 H 1.09002 * 109.47448 * 24.21231 * 27 26 24 46 46 H 1.09002 * 109.47026 * 144.20654 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0359 -1.4425 6 7 3.4610 3.4603 -2.8275 7 6 4.1952 4.7320 -2.8668 8 6 4.4273 5.1341 -4.3005 9 8 4.0215 4.4302 -5.2010 10 7 5.0858 6.2759 -4.5820 11 6 5.2964 6.6419 -5.8863 12 1 4.9344 6.0155 -6.6882 13 6 5.9758 7.8187 -6.1765 14 7 6.4168 8.5806 -5.2008 15 14 6.2622 8.3178 -7.9537 16 1 4.9549 8.4798 -8.6392 17 1 7.0040 9.6036 -7.9933 18 1 7.0549 7.2671 -8.6414 19 6 2.1389 -1.1671 -0.0005 20 8 3.3476 -1.1721 0.1443 21 6 1.4175 -2.4288 -0.1752 22 6 0.0616 -2.5978 -0.2216 23 7 -0.1851 -3.8957 -0.3928 24 6 0.9489 -4.5590 -0.4580 25 8 1.0682 -5.8950 -0.6282 26 7 1.9741 -3.6912 -0.3277 27 6 3.4019 -4.0182 -0.3496 28 1 -0.3633 -0.4059 0.9442 29 1 -0.3634 1.0205 -0.1205 30 1 -0.3634 -0.6147 -0.8236 31 1 1.6083 2.0284 0.5139 32 1 3.1498 1.1385 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.4999 1.8409 -1.9564 35 1 2.6273 3.7953 -0.9288 36 1 4.1692 2.9060 -0.9286 37 1 2.5965 3.5254 -3.3436 38 1 3.6131 5.5033 -2.3624 39 1 5.1546 4.6134 -2.3632 40 1 5.4106 6.8386 -3.8618 41 1 6.8914 9.4020 -5.4036 42 1 -0.6792 -1.8167 -0.1345 43 1 1.0871 -6.3967 0.1983 44 1 3.7641 -4.1334 0.6720 45 1 3.5531 -4.9493 -0.8958 46 1 3.9511 -3.2153 -0.8413 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716559886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:37 Heat of formation + Delta-G solvation = -52.622836 kcal Electronic energy + Delta-G solvation = -28265.776778 eV Core-core repulsion = 23998.877846 eV Total energy + Delta-G solvation = -4266.898932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.40777 -40.71721 -40.15401 -38.38874 -37.68785 -36.70970 -35.88172 -35.08457 -33.40502 -33.08242 -30.54519 -28.83751 -28.25319 -27.71869 -26.54159 -24.98952 -23.36438 -22.84041 -22.29856 -21.07536 -20.55573 -19.90725 -19.58677 -18.21211 -17.91195 -17.79566 -17.35858 -17.14406 -16.82110 -16.49328 -16.18206 -15.91147 -15.65560 -15.38879 -15.27039 -15.06256 -14.99908 -14.65915 -14.15491 -14.00468 -13.79970 -13.71329 -13.54557 -13.29837 -13.24329 -13.04598 -12.94943 -12.77945 -12.44933 -12.41457 -12.35824 -12.12339 -11.65993 -11.50986 -11.42815 -11.01239 -10.93614 -10.36912 -10.02521 -9.79474 -9.57943 -9.30449 -8.47109 -5.96162 0.06327 1.08187 1.39565 1.41465 1.48895 1.52541 2.01753 2.04406 2.16471 2.29207 2.79049 2.94990 3.19978 3.37474 3.54542 3.76100 3.86870 4.00721 4.12105 4.19150 4.23849 4.25756 4.31830 4.39764 4.47391 4.53874 4.56655 4.59398 4.65807 4.67269 4.81815 4.88327 4.93858 5.17566 5.21070 5.29101 5.40057 5.48361 5.54462 5.89608 6.11783 6.22294 6.43124 6.51201 6.59638 6.65955 6.98975 7.11728 7.55305 8.10881 8.69937 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.001580 C = 0.001544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.083553 B =17716.903963 C =18131.840795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.597 5.597 3 C 0.124 3.876 4 C -0.122 4.122 5 C 0.066 3.934 6 N -0.691 5.691 7 C 0.066 3.934 8 C 0.435 3.565 9 O -0.626 6.626 10 N -0.572 5.572 11 C -0.337 4.337 12 H 0.078 0.922 13 C -0.012 4.012 14 N -0.919 5.919 15 Si 0.994 3.006 16 H -0.271 1.271 17 H -0.269 1.269 18 H -0.274 1.274 19 C 0.587 3.413 20 O -0.579 6.579 21 C -0.102 4.102 22 C 0.043 3.957 23 N -0.517 5.517 24 C 0.399 3.601 25 O -0.443 6.443 26 N -0.435 5.435 27 C 0.069 3.931 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.345 0.655 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.236 0.764 43 H 0.428 0.572 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.406 -21.350 19.731 32.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.328 5.328 3 C 0.001 3.999 4 C -0.161 4.161 5 C -0.063 4.063 6 N -0.324 5.324 7 C -0.066 4.066 8 C 0.223 3.777 9 O -0.512 6.512 10 N -0.209 5.209 11 C -0.467 4.467 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.817 3.183 16 H -0.196 1.196 17 H -0.193 1.193 18 H -0.199 1.199 19 C 0.377 3.623 20 O -0.461 6.461 21 C -0.217 4.217 22 C -0.111 4.111 23 N -0.247 5.247 24 C 0.099 3.901 25 O -0.248 6.248 26 N -0.128 5.128 27 C -0.072 4.072 28 H 0.107 0.893 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.163 0.837 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.252 0.748 43 H 0.290 0.710 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.932 -22.420 18.506 31.818 hybrid contribution 0.904 1.151 0.004 1.463 sum -12.028 -21.270 18.510 30.654 Atomic orbital electron populations 1.22787 0.76922 1.06192 1.03396 1.47500 1.08673 1.04571 1.72036 1.21544 0.98324 0.83936 0.96050 1.21801 1.00466 0.96371 0.97459 1.21911 1.00327 0.96014 0.88056 1.60004 1.27495 1.30287 1.14643 1.21522 1.00977 0.91846 0.92261 1.20943 0.82491 0.82122 0.92160 1.90487 1.56337 1.54609 1.49816 1.41922 1.50258 1.20618 1.08126 1.19640 1.35724 1.06501 0.84806 0.90406 1.26046 0.95888 0.95398 1.03870 1.69667 1.38201 1.14504 1.33591 0.84982 0.78569 0.77691 0.77042 1.19609 1.19345 1.19901 1.16873 0.85813 0.83073 0.76551 1.90812 1.15368 1.87714 1.52191 1.20629 0.94649 0.86131 1.20316 1.24352 0.93362 0.93801 0.99609 1.70416 1.24735 1.06546 1.22969 1.20454 0.82457 0.84898 1.02298 1.84776 1.93857 1.08990 1.37153 1.45818 1.09260 1.06452 1.51249 1.22313 0.75787 1.03925 1.05185 0.89254 0.87387 0.89767 0.86359 0.90828 0.94116 0.90723 0.92556 0.90981 0.83659 0.91006 0.88096 0.76894 0.91247 0.74840 0.70996 0.88725 0.87056 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.30 8.63 127.77 1.10 1.40 16 2 N -0.60 -9.00 2.87 -851.81 -2.45 -11.45 16 3 C 0.12 1.85 5.42 86.38 0.47 2.32 16 4 C -0.12 -2.42 5.80 30.59 0.18 -2.25 16 5 C 0.07 1.45 5.69 86.30 0.49 1.94 16 6 N -0.69 -22.14 6.12 -517.94 -3.17 -25.31 16 7 C 0.07 2.29 6.17 85.56 0.53 2.82 16 8 C 0.44 21.13 7.82 87.66 0.69 21.81 16 9 O -0.63 -35.58 15.78 -3.07 -0.05 -35.63 16 10 N -0.57 -29.76 5.29 -306.99 -1.62 -31.38 16 11 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 12 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 13 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 14 N -0.92 -49.76 13.05 21.66 0.28 -49.47 16 15 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 C 0.59 12.73 7.61 86.36 0.66 13.39 16 20 O -0.58 -16.55 14.70 -4.46 -0.07 -16.62 16 21 C -0.10 -1.99 6.85 39.80 0.27 -1.72 16 22 C 0.04 0.68 9.89 84.13 0.83 1.51 16 23 N -0.52 -10.31 11.22 -313.64 -3.52 -13.83 16 24 C 0.40 7.18 9.01 179.99 1.62 8.80 16 25 O -0.44 -5.44 13.44 -84.88 -1.14 -6.58 16 26 N -0.43 -8.08 3.20 -651.99 -2.09 -10.17 16 27 C 0.07 1.01 10.45 127.77 1.33 2.34 16 28 H 0.09 0.25 7.39 -2.38 -0.02 0.23 16 29 H 0.11 0.23 7.86 -2.39 -0.02 0.21 16 30 H 0.08 0.51 5.49 -2.38 -0.01 0.50 16 31 H 0.12 0.95 7.98 -2.39 -0.02 0.93 16 32 H 0.07 1.39 7.33 -2.39 -0.02 1.37 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.34 11.36 8.43 -89.70 -0.76 10.60 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 41 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.24 1.92 4.12 -2.91 -0.01 1.91 16 43 H 0.43 0.44 9.06 -74.06 -0.67 -0.23 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 1.09 8.02 -2.39 -0.02 1.07 16 46 H 0.08 1.56 6.99 -2.39 -0.02 1.54 16 Total: -1.00 -84.20 388.07 -3.44 -87.64 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -1.10 Total: 33.94 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 9.45 Total: 33.58 kcal Atomic # 7 Polarization: -129.05 SS G_CDS: -12.57 Total: -141.62 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -1.25 Total: -58.83 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -84.20 -3.44 -87.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716559886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.019 kcal (2) G-P(sol) polarization free energy of solvation -84.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds