Wall clock time and date at job start Sat Apr 11 2020 05:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 119.99964 * 2 1 4 4 H 1.08000 * 119.99694 * 156.81242 * 3 2 1 5 5 C 1.38810 * 119.99705 * 337.08684 * 3 2 1 6 6 N 1.31617 * 120.00104 * 351.87662 * 5 3 2 7 7 Si 1.86800 * 119.99737 * 171.87713 * 5 3 2 8 8 H 1.48501 * 109.47108 * 89.99675 * 7 5 3 9 9 H 1.48496 * 109.47086 * 209.99802 * 7 5 3 10 10 H 1.48499 * 109.47054 * 329.99816 * 7 5 3 11 11 C 1.46501 * 120.00023 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.47242 * 276.52341 * 11 2 1 13 13 H 1.09007 * 109.87088 * 57.50355 * 12 11 2 14 14 C 1.54316 * 109.88616 * 296.32740 * 12 11 2 15 15 C 1.55154 * 102.94362 * 218.39021 * 14 12 11 16 16 C 1.54910 * 101.58099 * 35.49922 * 15 14 12 17 17 N 1.47024 * 109.88480 * 178.51527 * 12 11 2 18 18 C 1.34782 * 125.64665 * 298.39933 * 17 12 11 19 19 O 1.21599 * 119.99604 * 180.76987 * 18 17 12 20 20 C 1.47432 * 120.00333 * 0.77341 * 18 17 12 21 21 C 1.38748 * 120.32869 * 350.19853 * 20 18 17 22 22 C 1.38872 * 120.72064 * 180.02562 * 21 20 18 23 23 C 1.36350 * 121.06353 * 0.02562 * 22 21 20 24 24 C 1.40447 * 120.08087 * 359.97438 * 23 22 21 25 25 C 1.40808 * 121.26633 * 179.97438 * 24 23 22 26 26 C 1.36630 * 118.15271 * 179.97438 * 25 24 23 27 27 C 1.39232 * 119.91083 * 359.97438 * 26 25 24 28 28 N 1.31228 * 121.69541 * 359.97438 * 27 26 25 29 29 C 1.33351 * 121.35438 * 359.74787 * 28 27 26 30 30 H 1.09000 * 109.46907 * 92.35272 * 1 2 3 31 31 H 1.08995 * 109.47420 * 212.34753 * 1 2 3 32 32 H 1.08997 * 109.47607 * 332.35594 * 1 2 3 33 33 H 0.97002 * 119.99619 * 180.02562 * 6 5 3 34 34 H 1.09004 * 109.47078 * 36.52708 * 11 2 1 35 35 H 1.09005 * 109.46951 * 156.52523 * 11 2 1 36 36 H 1.09003 * 110.72147 * 336.75248 * 14 12 11 37 37 H 1.09001 * 110.72169 * 100.02385 * 14 12 11 38 38 H 1.09000 * 111.00530 * 277.42271 * 15 14 12 39 39 H 1.09005 * 111.00779 * 153.57326 * 15 14 12 40 40 H 1.09003 * 110.36770 * 204.15093 * 16 15 14 41 41 H 1.09002 * 110.36606 * 81.83086 * 16 15 14 42 42 H 1.07997 * 119.63973 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.46821 * 180.02562 * 22 21 20 44 44 H 1.07997 * 119.96298 * 179.97438 * 23 22 21 45 45 H 1.07994 * 120.92220 * 0.02562 * 25 24 23 46 46 H 1.08000 * 120.04494 * 180.02562 * 26 25 24 47 47 H 1.07997 * 119.15625 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1642 1.2237 0.3683 5 6 1.5377 2.3406 -0.4680 6 7 0.3632 2.2702 -1.0579 7 14 2.3811 3.9944 -0.2607 8 1 3.2366 4.2656 -1.4438 9 1 1.3554 5.0610 -0.1365 10 1 3.2219 3.9713 0.9632 11 6 2.1975 -1.2687 0.0006 12 6 2.3106 -1.7917 1.4339 13 1 1.3163 -1.9086 1.8652 14 6 3.1440 -0.8116 2.2861 15 6 3.9760 -1.7584 3.1908 16 6 4.2500 -2.9437 2.2317 17 7 3.0136 -3.0830 1.4411 18 6 2.5970 -4.2075 0.8259 19 8 3.2551 -5.2265 0.9111 20 6 1.3436 -4.2022 0.0497 21 6 0.4860 -3.1133 0.1112 22 6 -0.6969 -3.0999 -0.6161 23 6 -1.0479 -4.1529 -1.4080 24 6 -0.2088 -5.2754 -1.4993 25 6 -0.5469 -6.3768 -2.3089 26 6 0.3162 -7.4350 -2.3510 27 6 1.4919 -7.4022 -1.6058 28 7 1.8029 -6.3728 -0.8536 29 6 1.0062 -5.3064 -0.7730 30 1 -0.3633 -0.0422 -1.0268 31 1 -0.3634 -0.8681 0.5498 32 1 -0.3634 0.9103 0.4768 33 1 -0.0642 3.0771 -1.3853 34 1 1.6640 -1.9966 -0.6108 35 1 3.1955 -1.1122 -0.4089 36 1 3.7970 -0.2099 1.6538 37 1 2.4948 -0.1753 2.8876 38 1 3.3965 -2.0815 4.0556 39 1 4.9069 -1.2840 3.5014 40 1 4.4421 -3.8543 2.7991 41 1 5.0937 -2.7169 1.5798 42 1 0.7412 -2.2669 0.7315 43 1 -1.3494 -2.2416 -0.5535 44 1 -1.9723 -4.1239 -1.9657 45 1 -1.4627 -6.3844 -2.8812 46 1 0.0873 -8.2955 -2.9622 47 1 2.1656 -8.2451 -1.6485 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717369194.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:45 Heat of formation + Delta-G solvation = 108.307013 kcal Electronic energy + Delta-G solvation = -30547.199756 eV Core-core repulsion = 26698.128529 eV Total energy + Delta-G solvation = -3849.071227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16933 -39.79048 -37.42128 -36.92957 -35.29435 -33.46495 -32.11985 -31.43989 -30.37656 -29.82204 -28.85563 -26.21417 -25.65221 -24.42914 -23.69673 -23.36408 -21.96474 -21.21712 -20.45771 -18.97274 -18.46568 -17.05891 -16.92644 -16.67404 -16.12302 -15.76532 -15.02335 -14.85239 -14.76274 -14.47510 -13.98368 -13.81835 -13.71093 -13.48942 -13.18159 -13.02448 -12.96621 -12.80514 -12.50446 -12.29572 -11.94000 -11.74470 -11.59118 -11.32478 -11.05580 -10.90958 -10.86315 -10.69793 -10.60494 -10.40210 -10.30447 -10.13882 -9.93580 -9.84765 -9.73754 -9.00568 -8.69898 -8.55212 -8.32862 -8.07826 -6.83224 -5.83072 -3.29239 0.25680 0.90771 1.82384 2.89609 3.22183 3.32342 3.39567 3.39756 3.46536 4.28600 4.34037 4.40428 4.53160 4.70872 4.82141 4.88842 4.90060 4.97730 5.10024 5.18917 5.21405 5.32038 5.36791 5.41069 5.47191 5.55960 5.68460 5.71185 5.79079 5.89159 5.94465 6.01504 6.06123 6.09197 6.16616 6.30520 6.35792 6.41246 6.45432 6.50988 6.54820 6.64581 6.72485 6.78696 6.88103 7.28382 7.59315 7.73046 7.84903 8.09865 8.30157 8.59353 9.13479 9.74256 10.22239 11.22753 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013083 B = 0.004101 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.625528 B = 6825.160260 C = 8475.823230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.155 3.845 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.117 3.883 12 C 0.093 3.907 13 H 0.078 0.922 14 C -0.106 4.106 15 C -0.138 4.138 16 C 0.111 3.889 17 N -0.612 5.612 18 C 0.574 3.426 19 O -0.515 6.515 20 C -0.132 4.132 21 C -0.075 4.075 22 C -0.125 4.125 23 C -0.072 4.072 24 C -0.119 4.119 25 C -0.055 4.055 26 C -0.186 4.186 27 C 0.126 3.874 28 N -0.442 5.442 29 C 0.168 3.832 30 H 0.022 0.978 31 H -0.005 1.005 32 H 0.063 0.937 33 H 0.253 0.747 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.187 0.813 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 -13.552 2.112 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.316 5.316 3 C -0.384 4.384 4 H 0.089 0.911 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C -0.011 4.011 12 C -0.013 4.013 13 H 0.095 0.905 14 C -0.144 4.144 15 C -0.176 4.176 16 C -0.011 4.011 17 N -0.347 5.347 18 C 0.364 3.636 19 O -0.390 6.390 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.143 4.143 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.081 4.081 26 C -0.206 4.206 27 C -0.047 4.047 28 N -0.149 5.149 29 C 0.045 3.955 30 H 0.040 0.960 31 H 0.013 0.987 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.203 0.797 43 H 0.158 0.842 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.197 -13.917 2.579 14.204 hybrid contribution -0.526 1.042 -0.708 1.365 sum -1.724 -12.875 1.872 13.124 Atomic orbital electron populations 1.21049 0.82501 0.97181 0.98227 1.43821 1.01779 1.00106 1.85901 1.19225 0.98183 0.85302 1.35665 0.91094 1.25031 0.97368 0.98597 0.98370 1.70044 1.16181 1.27332 1.41765 0.86264 0.78541 0.83813 0.77939 1.21460 1.21635 1.20461 1.21810 0.97869 0.89464 0.91947 1.22931 0.95232 0.82253 1.00866 0.90478 1.22535 0.98407 0.96327 0.97150 1.22857 1.00936 0.96095 0.97747 1.22140 0.87095 0.98747 0.93166 1.48521 1.24110 1.10274 1.51811 1.17560 0.84830 0.82134 0.79098 1.90794 1.56359 1.31167 1.60720 1.19665 0.97177 0.94887 1.01805 1.23477 0.91810 0.97487 0.96565 1.21111 0.97173 0.99015 0.96998 1.21194 0.98525 0.92198 0.97224 1.18794 0.96365 0.96542 1.00413 1.21424 0.99037 0.92057 0.95612 1.21860 0.96492 0.99977 1.02277 1.23087 0.94484 0.96189 0.90921 1.68283 1.30584 0.99500 1.16515 1.18565 0.90123 0.92421 0.94373 0.96004 0.98702 0.91801 0.93663 0.92514 0.92314 0.89702 0.89938 0.91130 0.90147 0.90832 0.91667 0.79735 0.84233 0.85054 0.84528 0.84844 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.34 8.02 59.85 0.48 3.82 16 2 N -0.59 -13.27 2.77 -181.12 -0.50 -13.77 16 3 C -0.25 -6.32 8.95 -15.06 -0.13 -6.45 16 4 H 0.07 1.71 6.58 -52.49 -0.35 1.37 16 5 C 0.00 0.12 5.16 -17.43 -0.09 0.03 16 6 N -0.91 -24.67 10.48 55.49 0.58 -24.09 16 7 Si 0.90 20.63 29.56 -169.99 -5.02 15.61 16 8 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.12 2.28 4.39 -4.04 -0.02 2.26 16 12 C 0.09 1.54 2.40 -66.96 -0.16 1.38 16 13 H 0.08 1.28 6.12 -51.92 -0.32 0.96 16 14 C -0.11 -1.63 5.73 -24.90 -0.14 -1.77 16 15 C -0.14 -1.73 7.08 -24.58 -0.17 -1.90 16 16 C 0.11 1.61 6.91 -2.53 -0.02 1.59 16 17 N -0.61 -10.35 3.07 -165.55 -0.51 -10.86 16 18 C 0.57 10.96 7.63 -12.51 -0.10 10.86 16 19 O -0.51 -11.04 15.51 5.28 0.08 -10.96 16 20 C -0.13 -2.36 5.46 -104.62 -0.57 -2.93 16 21 C -0.07 -1.22 5.39 -39.16 -0.21 -1.43 16 22 C -0.13 -1.81 9.29 -40.03 -0.37 -2.18 16 23 C -0.07 -0.94 9.75 -39.43 -0.38 -1.32 16 24 C -0.12 -1.70 5.74 -106.82 -0.61 -2.32 16 25 C -0.06 -0.62 9.90 -39.19 -0.39 -1.00 16 26 C -0.19 -1.96 10.03 -39.79 -0.40 -2.35 16 27 C 0.13 1.64 11.15 -17.44 -0.19 1.45 16 28 N -0.44 -7.73 8.49 -10.76 -0.09 -7.82 16 29 C 0.17 2.92 6.61 -84.58 -0.56 2.36 16 30 H 0.02 0.51 7.79 -51.93 -0.40 0.11 16 31 H -0.01 -0.09 4.70 -51.93 -0.24 -0.34 16 32 H 0.06 1.54 6.67 -51.93 -0.35 1.19 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.06 1.13 4.02 -54.65 -0.22 0.91 16 35 H 0.06 1.22 7.95 -51.93 -0.41 0.81 16 36 H 0.08 1.42 6.41 -51.93 -0.33 1.09 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.05 8.03 -51.93 -0.42 0.64 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.19 3.11 0.67 -54.22 -0.04 3.07 16 43 H 0.14 1.86 6.79 -52.49 -0.36 1.51 16 44 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 46 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -31.69 359.60 -10.04 -41.73 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.95 Total: 4.64 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -4.04 Total: 0.10 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.52 Total: -56.54 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.69 -10.04 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717369194.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.039 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds