Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 119.99506 * 2 1 4 4 H 1.08000 * 120.00216 * 137.36320 * 3 2 1 5 5 C 1.38817 * 119.99998 * 317.36265 * 3 2 1 6 6 N 1.31614 * 119.99839 * 356.06767 * 5 3 2 7 7 Si 1.86802 * 119.99718 * 176.06643 * 5 3 2 8 8 H 1.48503 * 109.47326 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46992 * 120.00316 * 7 5 3 10 10 H 1.48501 * 109.47052 * 240.00105 * 7 5 3 11 11 C 1.46500 * 120.00805 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47148 * 281.43526 * 11 2 1 13 13 H 1.09001 * 109.99707 * 61.39426 * 12 11 2 14 14 C 1.54323 * 109.88481 * 182.48692 * 12 11 2 15 15 C 1.55157 * 102.94122 * 141.60599 * 14 12 11 16 16 C 1.55128 * 101.48778 * 324.33672 * 15 14 12 17 17 N 1.47024 * 109.88128 * 300.29595 * 12 11 2 18 18 C 1.34785 * 125.64559 * 61.61007 * 17 12 11 19 19 O 1.21558 * 120.00120 * 5.96179 * 18 17 12 20 20 C 1.47772 * 119.99489 * 185.96759 * 18 17 12 21 21 C 1.40646 * 119.70581 * 12.24234 * 20 18 17 22 22 C 1.35847 * 120.88281 * 180.02562 * 21 20 18 23 23 C 1.40390 * 119.84471 * 0.02562 * 22 21 20 24 24 C 1.40636 * 121.98633 * 179.97438 * 23 22 21 25 25 C 1.36219 * 118.73484 * 179.97438 * 24 23 22 26 26 N 1.32599 * 121.89780 * 0.02822 * 25 24 23 27 27 C 1.31236 * 122.74145 * 359.97324 * 26 25 24 28 28 C 1.40540 * 119.88766 * 0.02562 * 27 26 25 29 29 C 1.38565 * 119.69720 * 192.26230 * 20 18 17 30 30 H 1.08995 * 109.47021 * 276.23015 * 1 2 3 31 31 H 1.08997 * 109.47269 * 36.23919 * 1 2 3 32 32 H 1.09011 * 109.46722 * 156.23426 * 1 2 3 33 33 H 0.97005 * 119.99747 * 180.02562 * 6 5 3 34 34 H 1.08989 * 109.47355 * 161.43053 * 11 2 1 35 35 H 1.09006 * 109.46600 * 41.42847 * 11 2 1 36 36 H 1.08999 * 110.71927 * 259.97717 * 14 12 11 37 37 H 1.09002 * 110.71564 * 23.24475 * 14 12 11 38 38 H 1.09002 * 111.00060 * 82.57574 * 15 14 12 39 39 H 1.09000 * 111.00293 * 206.38498 * 15 14 12 40 40 H 1.08992 * 110.49400 * 278.45002 * 16 15 14 41 41 H 1.08994 * 110.34240 * 156.05556 * 16 15 14 42 42 H 1.08011 * 119.55931 * 0.02562 * 21 20 18 43 43 H 1.08005 * 120.07837 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.63616 * 0.27458 * 24 23 22 45 45 H 1.07995 * 119.05249 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.05411 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.34750 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0155 1.3097 0.6335 5 6 1.7306 2.2293 -0.8143 6 7 0.7233 2.0535 -1.6430 7 14 2.5966 3.8825 -0.7339 8 1 3.6891 3.8208 0.2701 9 1 3.1668 4.2079 -2.0659 10 1 1.6226 4.9329 -0.3424 11 6 2.1977 -1.2686 0.0006 12 6 2.2051 -1.8527 1.4147 13 1 1.1843 -2.0516 1.7412 14 6 3.0277 -3.1581 1.4391 15 6 3.7653 -3.0786 2.8018 16 6 4.0480 -1.5573 2.9118 17 7 2.8519 -0.9117 2.3409 18 6 2.4252 0.3365 2.6177 19 8 1.3674 0.7311 2.1673 20 6 3.2435 1.2251 3.4688 21 6 4.5700 0.8708 3.7736 22 6 5.3434 1.6696 4.5541 23 6 4.8174 2.8660 5.0668 24 6 5.5774 3.7261 5.8794 25 6 5.0007 4.8708 6.3407 26 7 3.7487 5.1928 6.0455 27 6 2.9805 4.4396 5.2939 28 6 3.4795 3.2361 4.7670 29 6 2.6968 2.3999 3.9597 30 1 -0.3633 0.1115 1.0215 31 1 -0.3633 0.8288 -0.6075 32 1 -0.3633 -0.9406 -0.4142 33 1 0.4308 2.7825 -2.2122 34 1 3.2229 -1.0963 -0.3267 35 1 1.7120 -1.9689 -0.6792 36 1 2.3716 -4.0280 1.4057 37 1 3.7409 -3.1799 0.6152 38 1 3.1234 -3.4198 3.6140 39 1 4.6951 -3.6468 2.7765 40 1 4.9342 -1.2912 2.3357 41 1 4.1726 -1.2695 3.9556 42 1 4.9793 -0.0489 3.3820 43 1 6.3603 1.3846 4.7803 44 1 6.6004 3.4862 6.1291 45 1 5.5796 5.5348 6.9654 46 1 1.9663 4.7438 5.0813 47 1 1.6775 2.6678 3.7237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717372105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 96.086685 kcal Electronic energy + Delta-G solvation = -30674.677740 eV Core-core repulsion = 26825.076600 eV Total energy + Delta-G solvation = -3849.601140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85315 -39.71622 -37.32383 -36.47328 -34.93527 -32.89174 -32.12780 -31.29837 -30.50482 -29.54768 -29.09043 -25.70932 -25.29576 -24.75198 -23.86224 -22.58788 -22.24130 -20.85737 -20.68920 -18.85878 -18.13302 -17.12382 -16.89671 -16.56442 -15.85846 -15.31725 -15.00648 -14.89475 -14.64372 -14.26317 -13.98947 -13.67123 -13.57276 -13.51191 -13.40867 -12.97214 -12.92892 -12.85310 -12.26211 -12.06317 -11.79184 -11.68691 -11.56750 -11.26830 -11.18899 -10.84877 -10.77323 -10.59589 -10.44205 -10.35972 -10.12942 -9.92543 -9.77475 -9.70057 -9.53610 -8.99870 -8.83737 -8.47260 -8.00337 -7.83994 -6.13611 -5.41945 -3.18729 0.32062 0.81996 1.90562 2.83829 3.42079 3.50077 3.51652 3.54480 3.85013 4.26871 4.38561 4.51342 4.59142 4.65507 4.72754 4.79522 4.86485 5.00441 5.04927 5.11578 5.26221 5.31256 5.45379 5.52571 5.56094 5.62241 5.65557 5.74656 5.80681 5.83081 5.93219 5.95932 6.06681 6.08569 6.16489 6.25960 6.35301 6.39571 6.45567 6.59110 6.62756 6.81510 6.94011 7.05746 7.12351 7.63759 7.88890 7.93852 8.16294 8.27486 8.81410 9.14560 9.45499 10.04349 10.64062 11.43132 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.005308 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.830174 B = 5274.087722 C = 7313.586968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.574 5.574 3 C -0.200 4.200 4 H 0.047 0.953 5 C 0.005 3.995 6 N -0.897 5.897 7 Si 0.890 3.110 8 H -0.279 1.279 9 H -0.292 1.292 10 H -0.289 1.289 11 C 0.140 3.860 12 C 0.118 3.882 13 H 0.063 0.937 14 C -0.127 4.127 15 C -0.134 4.134 16 C 0.093 3.907 17 N -0.609 5.609 18 C 0.545 3.455 19 O -0.438 6.438 20 C -0.108 4.108 21 C -0.098 4.098 22 C -0.128 4.128 23 C -0.016 4.016 24 C -0.161 4.161 25 C 0.074 3.926 26 N -0.497 5.497 27 C 0.157 3.843 28 C -0.119 4.119 29 C -0.028 4.028 30 H 0.000 1.000 31 H 0.094 0.906 32 H -0.005 1.005 33 H 0.249 0.751 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.154 0.846 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.150 0.850 46 H 0.166 0.834 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.910 -6.700 14.127 18.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.294 5.294 3 C -0.330 4.330 4 H 0.065 0.935 5 C -0.193 4.193 6 N -0.542 5.542 7 Si 0.720 3.280 8 H -0.204 1.204 9 H -0.219 1.219 10 H -0.216 1.216 11 C 0.011 3.989 12 C 0.012 3.988 13 H 0.081 0.919 14 C -0.166 4.166 15 C -0.172 4.172 16 C -0.031 4.031 17 N -0.347 5.347 18 C 0.332 3.668 19 O -0.308 6.308 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.146 4.146 23 C -0.021 4.021 24 C -0.181 4.181 25 C -0.069 4.069 26 N -0.205 5.205 27 C -0.015 4.015 28 C -0.121 4.121 29 C -0.049 4.049 30 H 0.018 0.982 31 H 0.111 0.889 32 H 0.014 0.986 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.171 0.829 43 H 0.148 0.852 44 H 0.153 0.847 45 H 0.167 0.833 46 H 0.183 0.817 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.961 -5.410 14.157 17.607 hybrid contribution 1.037 0.159 -0.345 1.104 sum 9.998 -5.251 13.812 17.841 Atomic orbital electron populations 1.21288 0.83819 0.99457 0.97752 1.43424 1.01279 0.99710 1.85033 1.18806 1.08780 0.90410 1.15037 0.93545 1.25320 0.98597 0.99012 0.96370 1.69696 1.27893 1.31117 1.25507 0.86387 0.79428 0.85009 0.77127 1.20437 1.21861 1.21609 1.21193 0.96688 0.89601 0.91403 1.22464 0.95552 0.87174 0.93579 0.91931 1.22666 0.99323 0.97411 0.97211 1.22822 1.00741 0.95415 0.98190 1.22647 0.89552 0.92614 0.98268 1.48015 1.27261 1.13815 1.45653 1.17411 0.86988 0.80265 0.82089 1.90967 1.21541 1.72013 1.46244 1.20203 0.94673 0.96513 0.99706 1.22165 0.93397 1.00478 0.95612 1.20818 1.00021 0.93968 0.99815 1.18264 0.92980 0.95020 0.95840 1.21863 1.00812 0.95968 0.99445 1.22156 0.91383 0.95272 0.98090 1.67452 1.06029 1.33072 1.13917 1.23311 0.99237 0.88668 0.90263 1.19009 0.94622 0.97525 1.00921 1.21443 1.00184 0.91345 0.91927 0.98197 0.88893 0.98577 0.93985 0.93159 0.94772 0.90792 0.90688 0.90981 0.90514 0.91702 0.90619 0.82911 0.85154 0.84691 0.83285 0.81737 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.18 9.71 59.85 0.58 3.76 16 2 N -0.57 -14.71 1.60 -181.12 -0.29 -15.00 16 3 C -0.20 -5.55 6.46 -15.06 -0.10 -5.65 16 4 H 0.05 1.31 6.15 -52.49 -0.32 0.99 16 5 C 0.00 0.14 5.33 -17.43 -0.09 0.05 16 6 N -0.90 -26.99 10.80 55.49 0.60 -26.39 16 7 Si 0.89 22.94 29.56 -169.99 -5.02 17.92 16 8 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 9 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 10 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 11 C 0.14 2.92 5.25 -4.04 -0.02 2.90 16 12 C 0.12 2.01 3.23 -66.95 -0.22 1.79 16 13 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.13 -1.53 6.47 -24.90 -0.16 -1.69 16 15 C -0.13 -1.33 7.10 -24.46 -0.17 -1.50 16 16 C 0.09 1.11 4.90 -2.41 -0.01 1.10 16 17 N -0.61 -10.35 3.06 -164.02 -0.50 -10.85 16 18 C 0.55 10.88 5.22 -12.36 -0.06 10.82 16 19 O -0.44 -10.59 10.13 5.31 0.05 -10.53 16 20 C -0.11 -1.86 5.83 -104.97 -0.61 -2.47 16 21 C -0.10 -1.36 8.11 -39.53 -0.32 -1.68 16 22 C -0.13 -1.60 9.77 -39.63 -0.39 -1.99 16 23 C -0.02 -0.22 5.75 -106.74 -0.61 -0.83 16 24 C -0.16 -1.86 9.87 -39.40 -0.39 -2.25 16 25 C 0.07 0.89 11.07 -17.95 -0.20 0.69 16 26 N -0.50 -7.07 10.30 -13.12 -0.14 -7.21 16 27 C 0.16 2.23 11.05 -16.94 -0.19 2.04 16 28 C -0.12 -1.81 5.74 -106.88 -0.61 -2.43 16 29 C -0.03 -0.48 9.37 -38.75 -0.36 -0.84 16 30 H 0.00 0.00 6.65 -51.93 -0.35 -0.35 16 31 H 0.09 2.73 5.15 -51.93 -0.27 2.47 16 32 H 0.00 -0.11 7.96 -51.92 -0.41 -0.52 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 34 H 0.05 1.07 7.94 -51.94 -0.41 0.66 16 35 H 0.03 0.69 8.05 -51.93 -0.42 0.27 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.87 7.84 -51.93 -0.41 0.46 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.74 7.19 -51.93 -0.37 0.36 16 41 H 0.08 0.81 6.13 -51.93 -0.32 0.49 16 42 H 0.15 1.81 3.43 -52.48 -0.18 1.63 16 43 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 46 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 47 H 0.15 2.53 7.66 -52.49 -0.40 2.13 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -34.57 364.24 -10.13 -44.69 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.38 Total: 0.06 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.94 Total: 1.82 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.33 Total: -59.45 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.05 Total: -10.53 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.57 -10.13 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717372105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.780 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds