Wall clock time and date at job start Sat Apr 11 2020 05:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36941 * 119.99506 * 2 1 4 4 H 1.08000 * 120.00216 * 137.36320 * 3 2 1 5 5 C 1.38817 * 119.99998 * 317.36265 * 3 2 1 6 6 N 1.31614 * 119.99839 * 356.06767 * 5 3 2 7 7 Si 1.86802 * 119.99718 * 176.06643 * 5 3 2 8 8 H 1.48503 * 109.47326 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46992 * 120.00316 * 7 5 3 10 10 H 1.48501 * 109.47052 * 240.00105 * 7 5 3 11 11 C 1.46500 * 120.00805 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47148 * 281.43526 * 11 2 1 13 13 H 1.09001 * 109.99707 * 61.39426 * 12 11 2 14 14 C 1.54323 * 109.88481 * 182.48692 * 12 11 2 15 15 C 1.55157 * 102.94122 * 141.60599 * 14 12 11 16 16 C 1.55128 * 101.48778 * 324.33672 * 15 14 12 17 17 N 1.47024 * 109.88128 * 300.29595 * 12 11 2 18 18 C 1.34785 * 125.64559 * 61.61007 * 17 12 11 19 19 O 1.21558 * 120.00120 * 5.96179 * 18 17 12 20 20 C 1.47772 * 119.99489 * 185.96759 * 18 17 12 21 21 C 1.40646 * 119.70581 * 12.24234 * 20 18 17 22 22 C 1.35847 * 120.88281 * 180.02562 * 21 20 18 23 23 C 1.40390 * 119.84471 * 0.02562 * 22 21 20 24 24 C 1.40636 * 121.98633 * 179.97438 * 23 22 21 25 25 C 1.36219 * 118.73484 * 179.97438 * 24 23 22 26 26 N 1.32599 * 121.89780 * 0.02822 * 25 24 23 27 27 C 1.31236 * 122.74145 * 359.97324 * 26 25 24 28 28 C 1.40540 * 119.88766 * 0.02562 * 27 26 25 29 29 C 1.38565 * 119.69720 * 192.26230 * 20 18 17 30 30 H 1.08995 * 109.47021 * 276.23015 * 1 2 3 31 31 H 1.08997 * 109.47269 * 36.23919 * 1 2 3 32 32 H 1.09011 * 109.46722 * 156.23426 * 1 2 3 33 33 H 0.97005 * 119.99747 * 180.02562 * 6 5 3 34 34 H 1.08989 * 109.47355 * 161.43053 * 11 2 1 35 35 H 1.09006 * 109.46600 * 41.42847 * 11 2 1 36 36 H 1.08999 * 110.71927 * 259.97717 * 14 12 11 37 37 H 1.09002 * 110.71564 * 23.24475 * 14 12 11 38 38 H 1.09002 * 111.00060 * 82.57574 * 15 14 12 39 39 H 1.09000 * 111.00293 * 206.38498 * 15 14 12 40 40 H 1.08992 * 110.49400 * 278.45002 * 16 15 14 41 41 H 1.08994 * 110.34240 * 156.05556 * 16 15 14 42 42 H 1.08011 * 119.55931 * 0.02562 * 21 20 18 43 43 H 1.08005 * 120.07837 * 179.97438 * 22 21 20 44 44 H 1.08001 * 120.63616 * 0.27458 * 24 23 22 45 45 H 1.07995 * 119.05249 * 179.97438 * 25 24 23 46 46 H 1.07996 * 120.05411 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.34750 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0155 1.3097 0.6335 5 6 1.7306 2.2293 -0.8143 6 7 0.7233 2.0535 -1.6430 7 14 2.5966 3.8825 -0.7339 8 1 3.6891 3.8208 0.2701 9 1 3.1668 4.2079 -2.0659 10 1 1.6226 4.9329 -0.3424 11 6 2.1977 -1.2686 0.0006 12 6 2.2051 -1.8527 1.4147 13 1 1.1843 -2.0516 1.7412 14 6 3.0277 -3.1581 1.4391 15 6 3.7653 -3.0786 2.8018 16 6 4.0480 -1.5573 2.9118 17 7 2.8519 -0.9117 2.3409 18 6 2.4252 0.3365 2.6177 19 8 1.3674 0.7311 2.1673 20 6 3.2435 1.2251 3.4688 21 6 4.5700 0.8708 3.7736 22 6 5.3434 1.6696 4.5541 23 6 4.8174 2.8660 5.0668 24 6 5.5774 3.7261 5.8794 25 6 5.0007 4.8708 6.3407 26 7 3.7487 5.1928 6.0455 27 6 2.9805 4.4396 5.2939 28 6 3.4795 3.2361 4.7670 29 6 2.6968 2.3999 3.9597 30 1 -0.3633 0.1115 1.0215 31 1 -0.3633 0.8288 -0.6075 32 1 -0.3633 -0.9406 -0.4142 33 1 0.4308 2.7825 -2.2122 34 1 3.2229 -1.0963 -0.3267 35 1 1.7120 -1.9689 -0.6792 36 1 2.3716 -4.0280 1.4057 37 1 3.7409 -3.1799 0.6152 38 1 3.1234 -3.4198 3.6140 39 1 4.6951 -3.6468 2.7765 40 1 4.9342 -1.2912 2.3357 41 1 4.1726 -1.2695 3.9556 42 1 4.9793 -0.0489 3.3820 43 1 6.3603 1.3846 4.7803 44 1 6.6004 3.4862 6.1291 45 1 5.5796 5.5348 6.9654 46 1 1.9663 4.7438 5.0813 47 1 1.6775 2.6678 3.7237 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717372105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:55 Heat of formation + Delta-G solvation = 75.222963 kcal Electronic energy + Delta-G solvation = -30675.582459 eV Core-core repulsion = 26825.076600 eV Total energy + Delta-G solvation = -3850.505859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.96896 -40.99023 -38.51396 -37.82522 -36.81102 -33.95843 -33.62842 -32.90784 -31.67095 -30.62080 -30.57310 -27.83839 -26.77606 -25.97570 -25.02267 -23.87806 -23.33872 -22.45314 -21.87728 -20.20082 -19.27288 -18.85815 -18.23196 -17.69245 -17.17703 -16.90353 -16.49102 -16.12467 -15.91993 -15.57675 -15.35272 -15.15757 -14.93951 -14.80628 -14.51475 -14.42164 -14.31699 -13.96387 -13.58781 -13.41600 -13.25475 -13.05448 -12.94162 -12.89022 -12.79499 -12.38226 -12.29966 -12.26098 -11.86042 -11.84716 -11.69989 -11.48994 -11.47943 -11.19285 -10.63906 -10.54399 -10.34806 -10.09342 -9.42913 -9.03764 -8.20243 -7.52645 -5.36779 -0.76142 -0.26846 0.81710 1.33231 1.36376 1.43799 1.71405 2.24474 2.49763 2.58110 3.08952 3.42033 3.43069 3.51297 3.63510 3.65956 3.78707 3.82811 3.92841 4.05306 4.11942 4.16021 4.18429 4.33447 4.40512 4.55805 4.61647 4.64058 4.70601 4.75530 4.80768 4.88457 4.93234 4.96438 4.97506 5.04281 5.08482 5.20563 5.26633 5.29386 5.32425 5.44935 5.48692 5.62964 5.65476 5.74696 5.86172 5.96365 6.63778 6.89927 6.93008 7.31213 7.68126 7.99147 8.53260 9.27201 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009868 B = 0.005308 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.830174 B = 5274.087722 C = 7313.586968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.586 5.586 3 C -0.179 4.179 4 H 0.040 0.960 5 C -0.055 4.055 6 N -0.932 5.932 7 Si 0.943 3.057 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.298 1.298 11 C 0.138 3.862 12 C 0.120 3.880 13 H 0.038 0.962 14 C -0.117 4.117 15 C -0.118 4.118 16 C 0.081 3.919 17 N -0.612 5.612 18 C 0.541 3.459 19 O -0.504 6.504 20 C -0.128 4.128 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.031 4.031 24 C -0.145 4.145 25 C 0.063 3.937 26 N -0.511 5.511 27 C 0.138 3.862 28 C -0.133 4.133 29 C -0.049 4.049 30 H -0.015 1.015 31 H 0.063 0.937 32 H 0.010 0.990 33 H 0.243 0.757 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.178 0.822 43 H 0.178 0.822 44 H 0.180 0.820 45 H 0.184 0.816 46 H 0.169 0.831 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.657 -8.475 16.537 23.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.307 5.307 3 C -0.311 4.311 4 H 0.058 0.942 5 C -0.249 4.249 6 N -0.581 5.581 7 Si 0.773 3.227 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.225 1.225 11 C 0.011 3.989 12 C 0.014 3.986 13 H 0.056 0.944 14 C -0.156 4.156 15 C -0.156 4.156 16 C -0.040 4.040 17 N -0.348 5.348 18 C 0.329 3.671 19 O -0.378 6.378 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.037 4.037 24 C -0.164 4.164 25 C -0.079 4.079 26 N -0.219 5.219 27 C -0.033 4.033 28 C -0.135 4.135 29 C -0.070 4.070 30 H 0.003 0.997 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.195 0.805 43 H 0.196 0.804 44 H 0.197 0.803 45 H 0.201 0.799 46 H 0.186 0.814 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.773 -7.246 16.602 22.756 hybrid contribution -0.358 0.674 -0.855 1.146 sum 13.416 -6.573 15.747 21.706 Atomic orbital electron populations 1.20965 0.84927 0.98834 0.96273 1.43545 1.01023 1.00970 1.85173 1.18826 1.07809 0.91365 1.13105 0.94237 1.25894 0.99863 1.01874 0.97256 1.69850 1.29659 1.31468 1.27126 0.85543 0.78302 0.81880 0.76961 1.20085 1.21480 1.22536 1.21394 0.95703 0.87626 0.94183 1.22278 0.95947 0.89515 0.90825 0.94352 1.22638 0.99206 0.94558 0.99178 1.22835 1.02237 0.93907 0.96638 1.23026 0.87838 0.93869 0.99283 1.48169 1.28564 1.13045 1.45051 1.18034 0.86459 0.81250 0.81371 1.90937 1.24120 1.73580 1.49176 1.20201 0.96342 0.96326 1.00235 1.22365 0.91803 1.01971 0.96437 1.21318 1.01502 0.92279 0.97325 1.18695 0.92391 0.96229 0.96347 1.22300 1.02266 0.94578 0.97298 1.22807 0.90740 0.96252 0.98143 1.67486 1.07339 1.33298 1.13803 1.23425 0.99912 0.88909 0.91059 1.19100 0.95752 0.97626 1.01060 1.21361 0.99718 0.92429 0.93509 0.99664 0.91945 0.97095 0.94724 0.93459 0.94225 0.88991 0.89653 0.90480 0.86695 0.90066 0.88772 0.80545 0.80429 0.80308 0.79940 0.81376 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.52 9.71 127.77 1.24 8.76 16 2 N -0.59 -31.25 1.60 -726.94 -1.16 -32.41 16 3 C -0.18 -10.36 6.46 84.03 0.54 -9.81 16 4 H 0.04 2.31 6.15 -2.91 -0.02 2.30 16 5 C -0.06 -3.35 5.33 84.86 0.45 -2.89 16 6 N -0.93 -59.08 10.80 21.65 0.23 -58.84 16 7 Si 0.94 49.33 29.56 68.60 2.03 51.36 16 8 H -0.28 -14.02 7.11 99.48 0.71 -13.32 16 9 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 10 H -0.30 -15.79 7.11 99.48 0.71 -15.09 16 11 C 0.14 5.79 5.25 86.38 0.45 6.25 16 12 C 0.12 4.02 3.23 45.34 0.15 4.16 16 13 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 14 C -0.12 -2.41 6.47 31.78 0.21 -2.21 16 15 C -0.12 -1.78 7.10 32.06 0.23 -1.56 16 16 C 0.08 1.65 4.90 86.93 0.43 2.08 16 17 N -0.61 -20.34 3.06 -791.09 -2.42 -22.76 16 18 C 0.54 22.27 5.22 86.76 0.45 22.72 16 19 O -0.50 -26.07 10.13 -3.90 -0.04 -26.11 16 20 C -0.13 -4.47 5.83 -20.09 -0.12 -4.59 16 21 C -0.11 -2.70 8.11 22.30 0.18 -2.52 16 22 C -0.11 -2.19 9.77 22.24 0.22 -1.98 16 23 C -0.03 -0.77 5.75 -21.24 -0.12 -0.89 16 24 C -0.15 -2.69 9.87 22.38 0.22 -2.47 16 25 C 0.06 1.31 11.07 84.11 0.93 2.25 16 26 N -0.51 -13.98 10.30 -195.42 -2.01 -15.99 16 27 C 0.14 4.00 11.05 85.34 0.94 4.95 16 28 C -0.13 -4.09 5.74 -21.32 -0.12 -4.21 16 29 C -0.05 -1.76 9.37 22.81 0.21 -1.55 16 30 H -0.01 -0.85 6.65 -2.39 -0.02 -0.86 16 31 H 0.06 3.93 5.15 -2.39 -0.01 3.91 16 32 H 0.01 0.53 7.96 -2.38 -0.02 0.51 16 33 H 0.24 14.96 8.31 -92.70 -0.77 14.19 16 34 H 0.05 1.99 7.94 -2.39 -0.02 1.97 16 35 H 0.04 1.60 8.05 -2.38 -0.02 1.58 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 1.64 7.84 -2.39 -0.02 1.62 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.46 7.19 -2.39 -0.02 1.44 16 41 H 0.09 1.62 6.13 -2.39 -0.01 1.61 16 42 H 0.18 3.45 3.43 -2.90 -0.01 3.44 16 43 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 45 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 46 H 0.17 4.43 8.06 -2.91 -0.02 4.40 16 47 H 0.12 4.77 7.66 -2.91 -0.02 4.75 16 Total: -1.00 -82.73 364.24 4.11 -78.63 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.99 Total: 9.66 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.49 Total: 16.48 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -5.36 Total: -130.01 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.04 Total: -26.11 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.03 Total: 51.36 kcal Total: -82.73 4.11 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717372105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.848 kcal (2) G-P(sol) polarization free energy of solvation -82.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds