Wall clock time and date at job start Sat Apr 11 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99956 * 2 1 4 4 C 1.53001 * 109.47315 * 270.00015 * 3 2 1 5 5 C 1.53004 * 109.47065 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47047 * 180.02562 * 5 4 3 7 7 C 1.36933 * 119.99803 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00377 * 0.02562 * 7 6 5 9 9 C 1.38816 * 119.99641 * 179.97438 * 7 6 5 10 10 N 1.31613 * 120.00107 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46932 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46746 * 119.99904 * 11 9 7 14 14 H 1.48495 * 109.47131 * 240.00337 * 11 9 7 15 15 C 1.34780 * 120.00119 * 180.02562 * 2 1 3 16 16 O 1.21511 * 119.99737 * 182.02551 * 15 2 1 17 17 C 1.48174 * 120.00107 * 2.02062 * 15 2 1 18 18 C 1.39100 * 119.66875 * 172.80527 * 17 15 2 19 19 C 1.39724 * 118.91752 * 180.25975 * 18 17 15 20 20 C 1.48368 * 120.87391 * 180.02562 * 19 18 17 21 21 C 1.39347 * 120.12173 * 359.69927 * 20 19 18 22 22 C 1.38008 * 119.87745 * 179.74613 * 21 20 19 23 23 C 1.38326 * 120.12088 * 0.55522 * 22 21 20 24 24 C 1.38319 * 120.24648 * 359.69893 * 23 22 21 25 25 C 1.38017 * 120.12460 * 0.02562 * 24 23 22 26 26 C 1.39732 * 118.25367 * 0.02562 * 19 18 17 27 27 C 1.38319 * 119.21988 * 0.02562 * 26 19 18 28 28 N 1.31581 * 121.02451 * 359.97292 * 27 26 19 29 29 H 1.08999 * 109.47122 * 263.71161 * 1 2 3 30 30 H 1.08994 * 109.47033 * 23.71616 * 1 2 3 31 31 H 1.08998 * 109.46598 * 143.71281 * 1 2 3 32 32 H 1.09006 * 109.47217 * 30.00250 * 3 2 1 33 33 H 1.09003 * 109.47280 * 149.99503 * 3 2 1 34 34 H 1.08998 * 109.47329 * 299.99967 * 4 3 2 35 35 H 1.08997 * 109.46923 * 60.00105 * 4 3 2 36 36 H 1.08998 * 109.47158 * 300.00240 * 5 4 3 37 37 H 1.08997 * 109.47027 * 60.00337 * 5 4 3 38 38 H 0.96997 * 119.99778 * 0.02562 * 6 5 4 39 39 H 0.97003 * 120.00369 * 179.97438 * 10 9 7 40 40 H 1.07997 * 120.54115 * 0.26333 * 18 17 15 41 41 H 1.08001 * 120.06140 * 0.02562 * 21 20 19 42 42 H 1.08008 * 119.94069 * 180.27523 * 22 21 20 43 43 H 1.08006 * 119.87568 * 179.71847 * 23 22 21 44 44 H 1.08007 * 119.94051 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.06292 * 180.02562 * 25 24 23 46 46 H 1.08005 * 120.39352 * 179.97438 * 26 19 18 47 47 H 1.07996 * 119.49010 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2170 3.0358 -1.4424 6 7 3.4606 3.4591 -2.8236 7 6 4.1327 4.6256 -3.0738 8 1 4.4836 5.2334 -2.2529 9 6 4.3640 5.0264 -4.3825 10 7 3.9369 4.2854 -5.3829 11 14 5.2803 6.6181 -4.7238 12 1 5.6507 7.2615 -3.4377 13 1 6.5105 6.3239 -5.5020 14 1 4.4087 7.5337 -5.5030 15 6 2.1389 -1.1672 -0.0005 16 8 3.3535 -1.1675 0.0367 17 6 1.3988 -2.4501 -0.0463 18 6 2.0977 -3.6431 -0.1980 19 6 1.3836 -4.8432 -0.2448 20 6 2.0850 -6.1408 -0.4048 21 6 3.4735 -6.1759 -0.5173 22 6 4.1212 -7.3861 -0.6607 23 6 3.3938 -8.5619 -0.7044 24 6 2.0149 -8.5325 -0.5985 25 6 1.3572 -7.3283 -0.4491 26 6 -0.0085 -4.7892 -0.1368 27 6 -0.6271 -3.5609 0.0107 28 7 0.0746 -2.4486 0.0511 29 1 -0.3633 -0.1126 1.0215 30 1 -0.3633 0.9408 -0.4133 31 1 -0.3632 -0.8284 -0.6082 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5139 34 1 3.0416 0.9509 -1.9564 35 1 1.5001 1.8408 -1.9563 36 1 2.6275 3.7952 -0.9287 37 1 4.1694 2.9059 -0.9285 38 1 3.1452 2.9134 -3.5609 39 1 4.0982 4.5656 -6.2975 40 1 3.1747 -3.6419 -0.2783 41 1 4.0421 -5.2582 -0.4877 42 1 5.1977 -7.4149 -0.7435 43 1 3.9044 -9.5064 -0.8213 44 1 1.4519 -9.4535 -0.6328 45 1 0.2807 -7.3066 -0.3661 46 1 -0.5947 -5.6958 -0.1691 47 1 -1.7028 -3.5141 0.0950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723156691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:09 Heat of formation + Delta-G solvation = 33.969853 kcal Electronic energy + Delta-G solvation = -27395.127188 eV Core-core repulsion = 23542.832460 eV Total energy + Delta-G solvation = -3852.294728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95245 -40.54521 -39.55153 -37.61897 -36.51192 -34.88090 -34.00171 -32.81821 -31.87606 -31.38613 -30.59600 -27.92381 -27.35950 -25.66449 -25.21564 -24.36818 -23.03454 -22.67312 -22.38484 -20.70388 -19.18222 -18.75367 -18.26882 -17.65384 -16.97359 -16.82634 -16.68555 -16.57351 -16.33347 -15.88310 -15.52310 -15.37588 -15.27697 -15.11421 -14.86010 -14.61744 -14.34795 -14.20918 -13.98743 -13.81685 -13.56457 -13.36786 -13.21076 -12.94147 -12.80204 -12.73524 -12.42946 -12.19702 -12.05220 -11.86903 -11.85519 -11.82247 -11.44293 -11.40526 -10.98135 -10.34690 -10.24881 -9.92175 -9.68427 -9.38429 -9.05259 -7.98242 -5.28623 -0.60010 -0.28820 0.43790 0.79893 1.45262 1.47481 1.57781 1.63962 1.86603 2.54104 2.66433 2.99248 3.01453 3.31752 3.35140 3.57137 3.82817 3.86259 3.89291 3.92719 4.01064 4.04806 4.22844 4.23769 4.35967 4.43517 4.50600 4.52448 4.53962 4.57506 4.65628 4.68166 4.72299 4.80000 4.91590 4.99826 5.03389 5.09391 5.17338 5.25473 5.27810 5.45154 5.46261 5.51277 5.56001 5.57595 5.65754 6.00661 6.23670 6.24520 6.64778 7.00128 7.28987 8.03686 8.27684 9.25968 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015054 B = 0.001919 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.531147 B =14589.506546 C =15733.261292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.592 5.592 3 C 0.124 3.876 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.749 5.749 7 C -0.248 4.248 8 H 0.079 0.921 9 C -0.081 4.081 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.264 1.264 13 H -0.293 1.293 14 H -0.289 1.289 15 C 0.554 3.446 16 O -0.576 6.576 17 C 0.067 3.933 18 C -0.122 4.122 19 C -0.009 4.009 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.102 4.102 26 C -0.131 4.131 27 C 0.100 3.900 28 N -0.460 5.460 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.016 0.984 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.137 0.863 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.181 0.819 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.732 -30.155 15.326 36.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.322 5.322 3 C 0.001 3.999 4 C -0.160 4.160 5 C 0.029 3.971 6 N -0.392 5.392 7 C -0.380 4.380 8 H 0.097 0.903 9 C -0.273 4.273 10 N -0.623 5.623 11 Si 0.809 3.191 12 H -0.188 1.188 13 H -0.220 1.220 14 H -0.216 1.216 15 C 0.342 3.658 16 O -0.456 6.456 17 C -0.069 4.069 18 C -0.143 4.143 19 C -0.017 4.017 20 C -0.076 4.076 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.120 4.120 26 C -0.150 4.150 27 C -0.058 4.058 28 N -0.172 5.172 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.203 0.797 39 H 0.061 0.939 40 H 0.150 0.850 41 H 0.134 0.866 42 H 0.155 0.845 43 H 0.165 0.835 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.198 0.802 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -13.432 -29.124 15.541 35.639 hybrid contribution 1.404 0.181 -0.971 1.717 sum -12.028 -28.943 14.569 34.563 Atomic orbital electron populations 1.22552 0.76024 1.04223 1.03800 1.47879 1.09310 1.04845 1.70170 1.21449 0.98012 0.84662 0.95813 1.21854 1.00148 0.96331 0.97636 1.20698 0.96506 0.93842 0.86090 1.42614 1.68270 1.25409 1.02904 1.19742 1.27258 0.98727 0.92273 0.90305 1.25695 1.03288 1.02859 0.95424 1.69845 1.53313 1.40847 0.98317 0.84971 0.77405 0.78793 0.77959 1.18806 1.22033 1.21603 1.18450 0.86360 0.84334 0.76691 1.90762 1.14802 1.87569 1.52479 1.20744 0.91034 0.92667 1.02464 1.22136 1.01804 0.91841 0.98536 1.19313 0.94352 0.91788 0.96261 1.18764 0.93332 0.91943 1.03536 1.21472 0.94150 0.99030 0.99551 1.21381 1.01164 0.92275 1.00006 1.21665 0.94869 0.98840 0.97800 1.21514 0.94750 0.98699 0.99087 1.21554 1.01287 0.90954 0.98165 1.22852 0.93207 1.01611 0.97367 1.23627 1.02337 0.86484 0.93381 1.68047 1.05523 1.31774 1.11895 0.91162 0.91010 0.87360 0.87115 0.91013 0.94500 0.91462 0.94583 0.96573 0.79705 0.93913 0.84987 0.86560 0.84540 0.83520 0.82763 0.82762 0.80169 0.77517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.55 9.30 127.77 1.19 2.74 16 2 N -0.59 -16.80 2.87 -849.82 -2.44 -19.24 16 3 C 0.12 3.69 5.39 86.38 0.47 4.16 16 4 C -0.12 -4.45 5.65 30.60 0.17 -4.28 16 5 C 0.16 6.75 6.26 86.38 0.54 7.29 16 6 N -0.75 -41.36 5.60 -343.45 -1.92 -43.29 16 7 C -0.25 -14.70 9.99 84.04 0.84 -13.86 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 9 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 10 N -0.97 -62.32 13.06 21.65 0.28 -62.03 16 11 Si 0.98 47.87 29.55 68.60 2.03 49.89 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 14 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 15 C 0.55 17.97 7.66 86.88 0.67 18.64 16 16 O -0.58 -22.97 15.91 -3.75 -0.06 -23.03 16 17 C 0.07 1.74 6.62 41.85 0.28 2.02 16 18 C -0.12 -2.97 9.02 22.84 0.21 -2.76 16 19 C -0.01 -0.17 5.91 -19.86 -0.12 -0.28 16 20 C -0.08 -1.24 5.88 -20.04 -0.12 -1.36 16 21 C -0.12 -2.24 9.45 22.48 0.21 -2.03 16 22 C -0.13 -1.88 10.03 22.24 0.22 -1.66 16 23 C -0.11 -1.22 10.04 22.31 0.22 -1.00 16 24 C -0.12 -1.12 10.03 22.24 0.22 -0.90 16 25 C -0.10 -1.09 9.45 22.49 0.21 -0.88 16 26 C -0.13 -1.45 9.51 22.65 0.22 -1.23 16 27 C 0.10 1.19 11.17 84.75 0.95 2.13 16 28 N -0.46 -9.03 6.01 -185.18 -1.11 -10.14 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 31 H 0.11 2.21 5.25 -2.83 -0.01 2.20 16 32 H 0.11 2.63 8.07 -2.38 -0.02 2.61 16 33 H 0.07 2.36 7.39 -2.39 -0.02 2.34 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.37 21.85 7.67 -92.71 -0.71 21.14 16 39 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 40 H 0.13 3.53 5.94 -2.91 -0.02 3.52 16 41 H 0.12 2.29 6.30 -2.91 -0.02 2.27 16 42 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 43 H 0.15 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.15 0.51 8.06 -2.91 -0.02 0.48 16 45 H 0.15 0.67 6.29 -2.91 -0.02 0.65 16 46 H 0.18 0.50 6.33 -2.91 -0.02 0.48 16 47 H 0.21 0.63 8.06 -2.91 -0.02 0.61 16 Total: -1.00 -81.08 391.55 3.90 -77.18 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.28 Total: 28.32 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 6.85 Total: 2.34 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -5.20 Total: -134.70 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.89 kcal Total: -81.08 3.90 -77.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723156691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.151 kcal (2) G-P(sol) polarization free energy of solvation -81.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds