Wall clock time and date at job start Sat Apr 11 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34260 * 125.74979 * 2 1 4 4 C 1.38049 * 107.41299 * 179.77166 * 3 2 1 5 5 C 1.47426 * 126.41249 * 180.22870 * 4 3 2 6 6 O 1.21596 * 120.00380 * 327.82262 * 5 4 3 7 7 N 1.34778 * 119.99553 * 147.82097 * 5 4 3 8 8 C 1.46496 * 120.00317 * 3.99640 * 7 5 4 9 9 C 1.53001 * 109.46773 * 95.40882 * 8 7 5 10 10 O 1.42894 * 109.47419 * 66.71765 * 9 8 7 11 11 C 1.46502 * 119.99529 * 184.00165 * 7 5 4 12 12 C 1.53004 * 109.47495 * 90.00074 * 11 7 5 13 13 N 1.46901 * 109.47309 * 179.97438 * 12 11 7 14 14 C 1.46897 * 110.99690 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46771 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99725 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99845 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99596 * 0.02562 * 18 17 15 20 20 C 1.38939 * 119.99894 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00429 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 89.99753 * 22 20 18 24 24 H 1.48493 * 109.47111 * 209.99831 * 22 20 18 25 25 H 1.48497 * 109.46567 * 329.99481 * 22 20 18 26 26 C 1.41291 * 107.17021 * 0.22875 * 4 3 2 27 27 N 1.30452 * 108.02186 * 0.02562 * 26 4 3 28 28 H 1.09001 * 109.47389 * 89.99626 * 1 2 3 29 29 H 1.08998 * 109.47267 * 209.99790 * 1 2 3 30 30 H 1.09006 * 109.47149 * 329.99910 * 1 2 3 31 31 H 1.07996 * 126.29553 * 0.04292 * 3 2 1 32 32 H 1.09001 * 109.47330 * 215.40116 * 8 7 5 33 33 H 1.08998 * 109.47374 * 335.40767 * 8 7 5 34 34 H 1.09005 * 109.47027 * 186.71901 * 9 8 7 35 35 H 1.09004 * 109.47001 * 306.71536 * 9 8 7 36 36 H 0.96707 * 114.00073 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46867 * 209.99610 * 11 7 5 38 38 H 1.09001 * 109.47364 * 329.99795 * 11 7 5 39 39 H 1.09000 * 109.46720 * 300.00080 * 12 11 7 40 40 H 1.09001 * 109.47042 * 59.99525 * 12 11 7 41 41 H 1.00895 * 110.99772 * 56.04762 * 13 12 11 42 42 H 1.08994 * 109.47432 * 299.99782 * 14 13 12 43 43 H 1.09007 * 109.46964 * 60.00194 * 14 13 12 44 44 H 0.97004 * 119.99943 * 0.02562 * 17 15 14 45 45 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 46 46 H 1.07996 * 125.99060 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0052 5 6 4.7637 1.5062 0.0119 6 8 4.7484 2.5858 -0.5474 7 7 5.8814 1.0874 0.6380 8 6 5.9289 -0.2490 1.2362 9 6 6.5653 -1.2280 0.2475 10 8 7.9401 -0.8875 0.0583 11 6 7.0488 1.9687 0.7202 12 6 6.9607 2.8145 1.9922 13 7 8.1316 3.6978 2.0750 14 6 8.0806 4.5272 3.2863 15 6 9.2955 5.4175 3.3369 16 8 10.1221 5.3664 2.4508 17 7 9.4629 6.2713 4.3663 18 6 10.5678 7.0816 4.4121 19 1 11.3039 7.0361 3.6230 20 6 10.7406 7.9614 5.4735 21 7 9.8448 8.0171 6.4334 22 14 12.2458 9.0660 5.5355 23 1 11.9483 10.3472 4.8461 24 1 12.6029 9.3371 6.9512 25 1 13.3827 8.3919 4.8586 26 6 3.5311 -0.7573 0.0031 27 7 2.2826 -1.1356 -0.0037 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9165 2.1170 0.0007 32 1 6.5230 -0.2174 2.1495 33 1 4.9168 -0.5776 1.4724 34 1 6.4930 -2.2415 0.6422 35 1 6.0423 -1.1717 -0.7072 36 1 8.4077 -1.4676 -0.5583 37 1 7.9572 1.3669 0.7463 38 1 7.0717 2.6237 -0.1507 39 1 6.0523 3.4162 1.9662 40 1 6.9378 2.1595 2.8632 41 1 8.2117 4.2704 1.2482 42 1 7.1803 5.1412 3.2687 43 1 8.0649 3.8843 4.1665 44 1 8.8016 6.3124 5.0748 45 1 9.9653 8.6315 7.1742 46 1 4.3918 -1.4096 0.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724661196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:13 Heat of formation + Delta-G solvation = -20.072943 kcal Electronic energy + Delta-G solvation = -28796.758734 eV Core-core repulsion = 24531.271271 eV Total energy + Delta-G solvation = -4265.487463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89283 -39.72660 -38.19273 -37.43892 -35.96703 -34.91130 -33.91622 -33.65560 -31.22030 -30.95631 -30.41169 -28.64699 -27.57938 -25.87142 -24.05790 -23.48844 -22.69032 -21.83896 -21.39679 -19.58038 -19.08569 -17.99863 -17.81524 -17.73260 -16.49349 -16.45248 -16.08100 -15.99201 -15.50421 -15.37777 -14.94003 -14.50443 -14.46908 -14.27042 -13.98719 -13.75632 -13.58283 -13.37021 -13.27500 -13.19983 -13.04597 -12.82235 -12.37979 -12.16450 -11.88872 -11.80570 -11.48897 -11.44287 -11.39717 -11.02011 -10.82503 -10.37508 -10.34616 -10.16177 -10.03067 -9.98147 -9.44886 -9.11115 -8.79510 -8.35857 -7.96756 -7.88921 -6.35773 -3.76325 1.18403 1.78546 1.88597 2.76364 3.08002 3.22459 3.30473 3.37061 3.84009 3.96104 3.98662 4.19846 4.32747 4.44969 4.50087 4.55201 4.58348 4.70426 4.82778 4.85485 4.95023 5.02430 5.07829 5.18153 5.22027 5.29856 5.31742 5.40454 5.50707 5.72553 5.86291 5.90530 6.04559 6.06211 6.15740 6.32152 6.33340 6.46552 7.06218 7.23813 7.30843 7.36381 7.61062 7.76558 8.09630 8.12962 8.68169 9.24156 9.61144 10.13047 10.82150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.001897 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.592655 B =14754.212645 C =15711.943765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.364 5.364 3 C 0.124 3.876 4 C -0.289 4.289 5 C 0.591 3.409 6 O -0.540 6.540 7 N -0.596 5.596 8 C 0.096 3.904 9 C 0.051 3.949 10 O -0.560 6.560 11 C 0.120 3.880 12 C 0.047 3.953 13 N -0.665 5.665 14 C 0.053 3.947 15 C 0.443 3.557 16 O -0.581 6.581 17 N -0.566 5.566 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.066 3.934 27 N -0.297 5.297 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.188 0.812 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.380 0.620 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.351 0.649 42 H 0.043 0.957 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.208 -22.032 -10.701 31.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.027 4.027 4 C -0.304 4.304 5 C 0.379 3.621 6 O -0.418 6.418 7 N -0.328 5.328 8 C -0.028 4.028 9 C -0.029 4.029 10 O -0.366 6.366 11 C -0.002 4.002 12 C -0.084 4.084 13 N -0.298 5.298 14 C -0.080 4.080 15 C 0.228 3.772 16 O -0.465 6.465 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.758 3.242 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.121 4.121 27 N -0.117 5.117 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.205 0.795 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.227 0.773 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.170 0.830 42 H 0.061 0.939 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.080 0.920 46 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -20.379 -22.376 -10.712 32.104 hybrid contribution 0.139 1.385 0.052 1.393 sum -20.240 -20.990 -10.660 31.046 Atomic orbital electron populations 1.22023 0.73306 1.05125 1.04031 1.48418 1.07297 1.03763 1.54799 1.22955 0.89912 0.93803 0.96031 1.20274 0.93634 0.93665 1.22833 1.17349 0.81847 0.85024 0.77849 1.90798 1.83475 1.22929 1.44555 1.47584 1.13965 1.15583 1.55691 1.22000 1.02151 0.82066 0.96593 1.22798 0.83702 0.97548 0.98807 1.86571 1.22130 1.59127 1.68723 1.21462 0.87512 0.93215 0.98002 1.22264 0.91796 0.95882 0.98429 1.60003 1.39556 1.24910 1.05327 1.21654 0.96841 0.95350 0.94182 1.19820 0.88636 0.84057 0.84676 1.90520 1.45793 1.70855 1.39364 1.41864 1.22746 1.34353 1.21281 1.19712 1.00318 1.14960 1.07705 0.87909 1.25260 0.98938 0.98453 0.95419 1.69617 1.35246 1.38379 1.11249 0.85851 0.81233 0.79920 0.77241 1.20472 1.20978 1.19406 1.24487 0.95423 0.94018 0.98163 1.77189 1.01829 1.08000 1.24680 0.90125 0.88759 0.88868 0.79495 0.89056 0.87943 0.92368 0.93227 0.77320 0.87968 0.89987 0.95467 0.91296 0.83019 0.93921 0.89673 0.77477 0.91952 0.78937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.28 11.44 59.85 0.68 0.96 16 2 N -0.36 -2.66 3.98 -67.59 -0.27 -2.93 16 3 C 0.12 1.02 11.43 -16.56 -0.19 0.83 16 4 C -0.29 -2.87 5.53 -105.07 -0.58 -3.45 16 5 C 0.59 7.43 7.61 -12.52 -0.10 7.33 16 6 O -0.54 -8.83 16.59 5.28 0.09 -8.75 16 7 N -0.60 -6.62 2.47 -174.95 -0.43 -7.05 16 8 C 0.10 0.74 5.35 -4.04 -0.02 0.72 16 9 C 0.05 0.31 6.04 37.16 0.22 0.54 16 10 O -0.56 -4.55 12.07 -35.23 -0.43 -4.98 16 11 C 0.12 1.59 5.54 -4.04 -0.02 1.57 16 12 C 0.05 0.68 6.01 -3.82 -0.02 0.65 16 13 N -0.67 -11.82 6.13 -115.05 -0.70 -12.53 16 14 C 0.05 1.00 6.17 -4.97 -0.03 0.97 16 15 C 0.44 10.96 7.82 -10.98 -0.09 10.87 16 16 O -0.58 -16.43 15.78 5.55 0.09 -16.35 16 17 N -0.57 -14.86 5.29 -10.96 -0.06 -14.92 16 18 C -0.30 -8.53 9.68 -14.94 -0.14 -8.68 16 19 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -25.13 13.05 55.50 0.72 -24.40 16 22 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.07 0.55 9.42 -16.98 -0.16 0.39 16 27 N -0.30 -2.67 12.50 30.86 0.39 -2.29 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 31 H 0.19 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.10 0.66 4.73 -51.93 -0.25 0.41 16 34 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.05 0.30 6.99 -51.93 -0.36 -0.07 16 36 H 0.38 1.53 9.12 45.56 0.42 1.95 16 37 H 0.10 1.38 6.67 -51.93 -0.35 1.04 16 38 H 0.08 1.22 7.37 -51.93 -0.38 0.84 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.35 6.51 8.43 -39.29 -0.33 6.18 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.39 9.84 7.90 -40.82 -0.32 9.51 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.19 1.11 4.11 -52.49 -0.22 0.90 16 LS Contribution 388.35 15.07 5.85 5.85 Total: -1.00 -38.48 388.35 -5.84 -44.33 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.53 Total: 14.31 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -0.54 Total: 13.17 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.35 Total: -64.12 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.25 Total: -30.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.48 -5.84 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724661196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.256 kcal (2) G-P(sol) polarization free energy of solvation -38.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds