Wall clock time and date at job start Sat Apr 11 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34260 * 125.74979 * 2 1 4 4 C 1.38049 * 107.41299 * 179.77166 * 3 2 1 5 5 C 1.47426 * 126.41249 * 180.22870 * 4 3 2 6 6 O 1.21596 * 120.00380 * 327.82262 * 5 4 3 7 7 N 1.34778 * 119.99553 * 147.82097 * 5 4 3 8 8 C 1.46496 * 120.00317 * 3.99640 * 7 5 4 9 9 C 1.53001 * 109.46773 * 95.40882 * 8 7 5 10 10 O 1.42894 * 109.47419 * 66.71765 * 9 8 7 11 11 C 1.46502 * 119.99529 * 184.00165 * 7 5 4 12 12 C 1.53004 * 109.47495 * 90.00074 * 11 7 5 13 13 N 1.46901 * 109.47309 * 179.97438 * 12 11 7 14 14 C 1.46897 * 110.99690 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46771 * 179.97438 * 14 13 12 16 16 O 1.21284 * 119.99849 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99725 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99845 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99596 * 0.02562 * 18 17 15 20 20 C 1.38939 * 119.99894 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00429 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47057 * 89.99753 * 22 20 18 24 24 H 1.48493 * 109.47111 * 209.99831 * 22 20 18 25 25 H 1.48497 * 109.46567 * 329.99481 * 22 20 18 26 26 C 1.41291 * 107.17021 * 0.22875 * 4 3 2 27 27 N 1.30452 * 108.02186 * 0.02562 * 26 4 3 28 28 H 1.09001 * 109.47389 * 89.99626 * 1 2 3 29 29 H 1.08998 * 109.47267 * 209.99790 * 1 2 3 30 30 H 1.09006 * 109.47149 * 329.99910 * 1 2 3 31 31 H 1.07996 * 126.29553 * 0.04292 * 3 2 1 32 32 H 1.09001 * 109.47330 * 215.40116 * 8 7 5 33 33 H 1.08998 * 109.47374 * 335.40767 * 8 7 5 34 34 H 1.09005 * 109.47027 * 186.71901 * 9 8 7 35 35 H 1.09004 * 109.47001 * 306.71536 * 9 8 7 36 36 H 0.96707 * 114.00073 * 180.02562 * 10 9 8 37 37 H 1.09006 * 109.46867 * 209.99610 * 11 7 5 38 38 H 1.09001 * 109.47364 * 329.99795 * 11 7 5 39 39 H 1.09000 * 109.46720 * 300.00080 * 12 11 7 40 40 H 1.09001 * 109.47042 * 59.99525 * 12 11 7 41 41 H 1.00895 * 110.99772 * 56.04762 * 13 12 11 42 42 H 1.08994 * 109.47432 * 299.99782 * 14 13 12 43 43 H 1.09007 * 109.46964 * 60.00194 * 14 13 12 44 44 H 0.97004 * 119.99943 * 0.02562 * 17 15 14 45 45 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 46 46 H 1.07996 * 125.99060 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0052 5 6 4.7637 1.5062 0.0119 6 8 4.7484 2.5858 -0.5474 7 7 5.8814 1.0874 0.6380 8 6 5.9289 -0.2490 1.2362 9 6 6.5653 -1.2280 0.2475 10 8 7.9401 -0.8875 0.0583 11 6 7.0488 1.9687 0.7202 12 6 6.9607 2.8145 1.9922 13 7 8.1316 3.6978 2.0750 14 6 8.0806 4.5272 3.2863 15 6 9.2955 5.4175 3.3369 16 8 10.1221 5.3664 2.4508 17 7 9.4629 6.2713 4.3663 18 6 10.5678 7.0816 4.4121 19 1 11.3039 7.0361 3.6230 20 6 10.7406 7.9614 5.4735 21 7 9.8448 8.0171 6.4334 22 14 12.2458 9.0660 5.5355 23 1 11.9483 10.3472 4.8461 24 1 12.6029 9.3371 6.9512 25 1 13.3827 8.3919 4.8586 26 6 3.5311 -0.7573 0.0031 27 7 2.2826 -1.1356 -0.0037 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9165 2.1170 0.0007 32 1 6.5230 -0.2174 2.1495 33 1 4.9168 -0.5776 1.4724 34 1 6.4930 -2.2415 0.6422 35 1 6.0423 -1.1717 -0.7072 36 1 8.4077 -1.4676 -0.5583 37 1 7.9572 1.3669 0.7463 38 1 7.0717 2.6237 -0.1507 39 1 6.0523 3.4162 1.9662 40 1 6.9378 2.1595 2.8632 41 1 8.2117 4.2704 1.2482 42 1 7.1803 5.1412 3.2687 43 1 8.0649 3.8843 4.1665 44 1 8.8016 6.3124 5.0748 45 1 9.9653 8.6315 7.1742 46 1 4.3918 -1.4096 0.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724661196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:12 Heat of formation + Delta-G solvation = -53.430112 kcal Electronic energy + Delta-G solvation = -28798.205209 eV Core-core repulsion = 24531.271271 eV Total energy + Delta-G solvation = -4266.933938 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.52941 -40.62168 -40.12712 -38.15211 -37.19112 -36.07523 -35.68316 -34.37497 -33.27786 -31.87384 -31.17231 -29.64577 -28.27823 -27.36987 -25.68173 -24.18672 -23.71478 -22.62079 -22.09968 -21.13634 -20.26273 -19.88703 -18.64327 -18.36336 -17.87363 -17.38265 -17.17190 -16.90636 -16.62849 -16.44383 -16.16887 -15.89604 -15.65476 -15.34866 -15.15966 -14.98635 -14.75271 -14.59786 -13.95105 -13.92492 -13.77807 -13.63600 -13.52951 -13.43507 -13.37286 -13.02613 -12.86129 -12.67911 -12.47122 -12.41586 -12.14481 -12.11192 -11.95762 -11.50970 -11.01423 -10.82265 -10.59227 -10.38952 -10.02002 -9.85795 -9.58958 -9.40593 -8.46452 -5.95492 0.53613 1.10097 1.38589 1.41434 1.42186 1.55466 1.88776 2.03965 2.24617 2.30494 2.97820 3.20238 3.37058 3.43900 3.56547 3.77431 3.82728 4.02025 4.11807 4.16164 4.21557 4.28838 4.32690 4.42512 4.46439 4.47733 4.54482 4.54971 4.57020 4.59916 4.66894 4.71251 4.90344 4.93136 5.05528 5.31021 5.41079 5.50363 5.83264 5.85515 6.06898 6.29775 6.39529 6.48258 6.59714 6.98498 7.12128 7.17071 7.55046 8.10458 8.71034 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.001897 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.592655 B =14754.212645 C =15711.943765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.359 5.359 3 C 0.127 3.873 4 C -0.315 4.315 5 C 0.589 3.411 6 O -0.589 6.589 7 N -0.592 5.592 8 C 0.090 3.910 9 C 0.051 3.949 10 O -0.587 6.587 11 C 0.131 3.869 12 C 0.057 3.943 13 N -0.676 5.676 14 C 0.067 3.933 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.273 1.273 26 C 0.074 3.926 27 N -0.318 5.318 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.204 0.796 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.395 0.605 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.022 0.978 40 H 0.084 0.916 41 H 0.343 0.657 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.518 -23.276 -9.930 33.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.137 5.137 3 C -0.025 4.025 4 C -0.330 4.330 5 C 0.379 3.621 6 O -0.471 6.471 7 N -0.323 5.323 8 C -0.032 4.032 9 C -0.028 4.028 10 O -0.396 6.396 11 C 0.008 3.992 12 C -0.073 4.073 13 N -0.308 5.308 14 C -0.066 4.066 15 C 0.226 3.774 16 O -0.508 6.508 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.113 4.113 27 N -0.138 5.138 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.135 0.865 31 H 0.221 0.779 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.109 0.891 35 H 0.069 0.931 36 H 0.245 0.755 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.102 0.898 41 H 0.161 0.839 42 H 0.080 0.920 43 H 0.126 0.874 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -21.735 -23.691 -9.913 33.644 hybrid contribution 0.460 1.714 -0.204 1.786 sum -21.275 -21.977 -10.118 32.218 Atomic orbital electron populations 1.22411 0.70891 1.06728 1.05340 1.48765 1.08614 1.02989 1.53364 1.23259 0.89692 0.94786 0.94802 1.20170 0.93195 0.94226 1.25404 1.17742 0.82648 0.84639 0.77045 1.90764 1.84325 1.25150 1.46818 1.47621 1.12882 1.16496 1.55289 1.22280 1.03399 0.80623 0.96943 1.22852 0.82827 0.98490 0.98608 1.86515 1.23156 1.60394 1.69504 1.21187 0.88443 0.93090 0.96519 1.22245 0.90116 0.95355 0.99571 1.60023 1.41478 1.24785 1.04512 1.21529 0.94355 0.95083 0.95634 1.20800 0.89644 0.83680 0.83324 1.90488 1.47744 1.71954 1.40622 1.41921 1.22452 1.34636 1.21944 1.19688 1.01349 1.17134 1.08245 0.90282 1.26077 1.01701 0.99078 0.94530 1.69676 1.36350 1.38669 1.11428 0.84896 0.77427 0.77943 0.77863 1.19639 1.19393 1.19764 1.24733 0.95908 0.93414 0.97221 1.77155 1.02208 1.09038 1.25426 0.88928 0.88032 0.86480 0.77897 0.88990 0.86342 0.89109 0.93055 0.75476 0.88136 0.92224 0.95987 0.89755 0.83891 0.92019 0.87435 0.76942 0.91260 0.77026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.30 11.44 127.77 1.46 1.76 16 2 N -0.36 -4.57 3.98 -367.77 -1.46 -6.04 16 3 C 0.13 1.93 11.43 84.28 0.96 2.90 16 4 C -0.31 -5.99 5.53 -20.15 -0.11 -6.10 16 5 C 0.59 14.85 7.61 86.66 0.66 15.51 16 6 O -0.59 -19.93 16.59 -4.02 -0.07 -19.99 16 7 N -0.59 -12.93 2.47 -825.69 -2.04 -14.97 16 8 C 0.09 1.26 5.35 86.38 0.46 1.72 16 9 C 0.05 0.53 6.04 71.98 0.43 0.96 16 10 O -0.59 -8.85 12.07 -148.98 -1.80 -10.65 16 11 C 0.13 3.50 5.54 86.38 0.48 3.98 16 12 C 0.06 1.62 6.01 86.30 0.52 2.13 16 13 N -0.68 -23.98 6.13 -517.92 -3.17 -27.15 16 14 C 0.07 2.48 6.17 85.56 0.53 3.01 16 15 C 0.44 21.99 7.82 87.66 0.69 22.68 16 16 O -0.62 -36.13 15.78 -3.04 -0.05 -36.18 16 17 N -0.57 -30.52 5.29 -306.99 -1.62 -32.14 16 18 C -0.33 -19.58 9.68 84.04 0.81 -18.77 16 19 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 20 C -0.01 -0.78 5.50 84.92 0.47 -0.31 16 21 N -0.92 -50.63 13.05 21.66 0.28 -50.34 16 22 Si 1.00 43.87 29.55 68.60 2.03 45.89 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.07 1.10 9.42 85.65 0.81 1.91 16 27 N -0.32 -5.15 12.50 -56.27 -0.70 -5.86 16 28 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.12 -0.14 8.14 -2.38 -0.02 -0.16 16 31 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.09 1.30 8.11 -2.39 -0.02 1.28 16 33 H 0.12 1.28 4.73 -2.39 -0.01 1.27 16 34 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.05 0.53 6.99 -2.39 -0.02 0.51 16 36 H 0.40 2.74 9.12 -74.05 -0.68 2.06 16 37 H 0.10 2.73 6.67 -2.38 -0.02 2.71 16 38 H 0.06 1.86 7.37 -2.39 -0.02 1.85 16 39 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.34 13.07 8.43 -89.70 -0.76 12.31 16 42 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.11 3.57 8.14 -2.38 -0.02 3.55 16 44 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 45 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 46 H 0.21 1.99 4.11 -2.91 -0.01 1.98 16 Total: -1.00 -84.45 388.35 -1.54 -85.99 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: -1.11 Total: 40.06 kcal Atomic # 6 Polarization: 23.21 SS G_CDS: 8.17 Total: 31.38 kcal Atomic # 7 Polarization: -127.79 SS G_CDS: -8.72 Total: -136.50 kcal Atomic # 8 Polarization: -64.91 SS G_CDS: -1.91 Total: -66.82 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -84.45 -1.54 -85.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724661196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.563 kcal (2) G-P(sol) polarization free energy of solvation -84.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds