Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37351 * 125.83260 * 2 1 4 4 N 1.29401 * 108.83204 * 180.02562 * 3 2 1 5 5 N 1.40169 * 108.13925 * 0.02562 * 4 3 2 6 6 C 1.46497 * 126.34761 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47235 * 270.02237 * 6 5 4 8 8 C 1.50700 * 109.46962 * 180.02562 * 7 6 5 9 9 O 1.21279 * 119.99961 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99851 * 180.02562 * 8 7 6 11 11 C 1.46503 * 120.00146 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47431 * 179.97438 * 11 10 8 13 13 H 1.09003 * 109.67737 * 299.80694 * 12 11 10 14 14 C 1.53300 * 109.68183 * 179.24979 * 12 11 10 15 15 O 1.42965 * 109.21837 * 187.97330 * 14 12 11 16 16 C 1.42962 * 114.16710 * 62.58396 * 15 14 12 17 17 C 1.53296 * 109.22414 * 297.41601 * 16 15 14 18 18 N 1.47152 * 109.68202 * 60.32217 * 12 11 10 19 19 C 1.36936 * 120.98489 * 350.24172 * 18 12 11 20 20 H 1.08002 * 119.99944 * 49.93852 * 19 18 12 21 21 C 1.38817 * 120.00256 * 229.95101 * 19 18 12 22 22 N 1.31614 * 120.00063 * 188.84640 * 21 19 18 23 23 Si 1.86799 * 119.99597 * 8.84365 * 21 19 18 24 24 H 1.48497 * 109.47026 * 84.33306 * 23 21 19 25 25 H 1.48503 * 109.47141 * 204.32961 * 23 21 19 26 26 H 1.48498 * 109.47303 * 324.32859 * 23 21 19 27 27 C 1.34818 * 125.83031 * 180.02562 * 2 1 3 28 28 O 1.21808 * 126.30605 * 0.21394 * 27 2 1 29 29 H 1.08996 * 109.46691 * 269.94032 * 1 2 3 30 30 H 1.08990 * 109.47087 * 29.94262 * 1 2 3 31 31 H 1.08998 * 109.47063 * 149.94792 * 1 2 3 32 32 H 1.08007 * 125.58335 * 0.09756 * 3 2 1 33 33 H 1.08998 * 109.47258 * 30.03186 * 6 5 4 34 34 H 1.09004 * 109.46396 * 150.02772 * 6 5 4 35 35 H 1.08996 * 109.47281 * 300.00498 * 7 6 5 36 36 H 1.08998 * 109.46555 * 60.00933 * 7 6 5 37 37 H 0.96998 * 120.00198 * 0.02562 * 10 8 7 38 38 H 1.09003 * 109.46555 * 300.00077 * 11 10 8 39 39 H 1.09003 * 109.47116 * 59.99576 * 11 10 8 40 40 H 1.08994 * 109.51177 * 307.89313 * 14 12 11 41 41 H 1.08993 * 109.51268 * 68.05387 * 14 12 11 42 42 H 1.09002 * 109.51479 * 177.49079 * 16 15 14 43 43 H 1.09000 * 109.55666 * 57.36123 * 16 15 14 44 44 H 1.09004 * 109.68044 * 292.57956 * 17 16 15 45 45 H 1.08994 * 109.68244 * 172.02522 * 17 16 15 46 46 H 0.96996 * 119.99892 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5345 -0.6662 -0.0015 6 6 4.7314 -1.5109 -0.0029 7 6 5.1475 -1.8035 -1.4459 8 6 6.3784 -2.6729 -1.4473 9 8 6.8738 -3.0242 -0.3975 10 7 6.9288 -3.0599 -2.6151 11 6 8.1251 -3.9056 -2.6165 12 6 8.5412 -4.1981 -4.0594 13 1 7.7342 -4.7177 -4.5760 14 6 9.8039 -5.0675 -4.0664 15 8 10.2900 -5.1804 -5.4061 16 6 10.6875 -3.9380 -5.9911 17 6 9.4702 -3.0108 -6.0827 18 7 8.8427 -2.9362 -4.7537 19 6 8.5477 -1.7282 -4.1804 20 1 8.8571 -1.5217 -3.1664 21 6 7.8508 -0.7689 -4.9023 22 7 7.7182 0.4490 -4.4214 23 14 7.1014 -1.2067 -6.5564 24 1 5.7705 -1.8313 -6.3471 25 1 6.9475 0.0249 -7.3717 26 1 7.9904 -2.1618 -7.2655 27 6 2.2543 -1.0930 -0.0005 28 8 1.8806 -2.2524 -0.0047 29 1 -0.3632 -0.0011 1.0277 30 1 -0.3633 0.8904 -0.5129 31 1 -0.3633 -0.8895 -0.5146 32 1 1.9249 2.1373 0.0015 33 1 5.5416 -0.9938 0.5112 34 1 4.5152 -2.4480 0.5100 35 1 4.3373 -2.3206 -1.9599 36 1 5.3637 -0.8663 -1.9588 37 1 6.5328 -2.7786 -3.4547 38 1 8.9354 -3.3893 -2.1017 39 1 7.9081 -4.8429 -2.1041 40 1 10.5671 -4.6060 -3.4399 41 1 9.5655 -6.0587 -3.6808 42 1 11.0850 -4.1167 -6.9903 43 1 11.4543 -3.4721 -5.3722 44 1 8.7572 -3.4111 -6.8034 45 1 9.7890 -2.0162 -6.3945 46 1 7.2315 1.1194 -4.9260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724772207.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = 6.507911 kcal Electronic energy + Delta-G solvation = -30425.335524 eV Core-core repulsion = 26161.000694 eV Total energy + Delta-G solvation = -4264.334830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.41669 -39.36127 -38.50715 -37.23743 -35.77259 -35.31099 -33.54398 -32.69535 -31.80734 -31.05471 -29.72965 -27.69557 -27.44919 -25.80048 -24.15804 -23.34473 -22.44730 -21.99608 -21.04788 -20.03763 -19.52729 -17.72096 -17.09429 -16.76206 -16.31178 -16.03166 -16.00250 -15.79255 -15.52085 -15.17194 -14.94693 -14.68355 -14.44650 -14.33084 -14.01513 -13.89675 -13.39728 -13.01063 -12.99285 -12.76051 -12.68240 -12.54841 -12.18767 -12.02670 -11.90497 -11.84807 -11.54869 -10.98705 -10.94655 -10.80904 -10.78703 -10.26949 -10.23451 -10.14263 -9.90424 -9.60543 -9.40228 -9.11548 -8.61488 -8.56041 -8.22018 -6.73622 -6.12117 -3.76581 1.73926 1.93279 2.65594 3.05653 3.20706 3.27480 3.33869 3.37009 3.90363 4.32175 4.36324 4.37598 4.63302 4.72148 4.89986 4.95180 5.10282 5.13461 5.23171 5.32030 5.39244 5.48810 5.58870 5.66776 5.70471 5.73410 5.84450 5.92340 5.94291 6.03196 6.03552 6.09907 6.16204 6.28870 6.29392 6.42255 6.51702 6.62147 6.77124 7.17676 7.60603 7.62042 7.92865 8.03108 8.26851 8.29826 8.76128 8.89079 9.49303 9.97215 10.99791 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.003081 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.583709 B = 9087.124947 C =10078.042051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.565 5.565 3 C 0.244 3.756 4 N -0.270 5.270 5 N -0.446 5.446 6 C 0.180 3.820 7 C -0.159 4.159 8 C 0.523 3.477 9 O -0.568 6.568 10 N -0.687 5.687 11 C 0.141 3.859 12 C 0.123 3.877 13 H 0.044 0.956 14 C 0.055 3.945 15 O -0.390 6.390 16 C 0.042 3.958 17 C 0.102 3.898 18 N -0.606 5.606 19 C -0.269 4.269 20 H 0.079 0.921 21 C 0.046 3.954 22 N -0.896 5.896 23 Si 0.847 3.153 24 H -0.286 1.286 25 H -0.299 1.299 26 H -0.236 1.236 27 C 0.641 3.359 28 O -0.556 6.556 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.411 0.589 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.073 0.927 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.271 -0.077 4.639 11.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.295 5.295 3 C -0.055 4.055 4 N -0.090 5.090 5 N -0.267 5.267 6 C 0.059 3.941 7 C -0.200 4.200 8 C 0.309 3.691 9 O -0.449 6.449 10 N -0.337 5.337 11 C 0.016 3.984 12 C 0.016 3.984 13 H 0.062 0.938 14 C -0.023 4.023 15 O -0.308 6.308 16 C -0.036 4.036 17 C -0.023 4.023 18 N -0.333 5.333 19 C -0.397 4.397 20 H 0.097 0.903 21 C -0.156 4.156 22 N -0.536 5.536 23 Si 0.675 3.325 24 H -0.212 1.212 25 H -0.226 1.226 26 H -0.161 1.161 27 C 0.340 3.660 28 O -0.430 6.430 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.246 0.754 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.248 0.752 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.198 -0.893 5.243 10.625 hybrid contribution -1.493 0.488 -1.407 2.109 sum -10.691 -0.405 3.836 11.365 Atomic orbital electron populations 1.21778 0.74491 1.04623 1.03304 1.45944 1.08784 1.06808 1.67915 1.25935 0.85904 0.94667 0.98987 1.77098 1.17973 0.92190 1.21734 1.49119 1.06308 1.03057 1.68199 1.21219 0.82949 0.93152 0.96766 1.21977 0.97228 1.02353 0.98487 1.20014 0.84864 0.80256 0.83988 1.90637 1.64691 1.58076 1.31532 1.45831 1.28381 1.50737 1.08706 1.21069 0.88140 0.93406 0.95761 1.21572 0.95283 0.89047 0.92452 0.93800 1.22892 0.95823 0.99701 0.83930 1.87822 1.83799 1.30540 1.28636 1.23145 0.97404 0.85603 0.97408 1.22366 0.92807 0.98550 0.88548 1.44362 1.70268 1.01508 1.17206 1.18667 1.31402 0.89175 1.00488 0.90348 1.25762 0.96236 0.95843 0.97785 1.69784 1.42461 1.02550 1.38784 0.87656 0.80976 0.78151 0.85698 1.21213 1.22561 1.16071 1.16817 0.82235 0.85093 0.81806 1.91077 1.77794 1.15198 1.58962 0.91054 0.89426 0.89525 0.75423 0.87755 0.88084 0.89243 0.87297 0.75192 0.91303 0.92291 0.93045 0.89509 0.89991 0.93348 0.94064 0.90821 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.05 59.85 0.66 1.29 16 2 N -0.56 -6.07 3.14 -130.11 -0.41 -6.48 16 3 C 0.24 2.28 12.66 -89.13 -1.13 1.15 16 4 N -0.27 -3.72 12.53 29.87 0.37 -3.34 16 5 N -0.45 -6.94 3.63 -65.12 -0.24 -7.18 16 6 C 0.18 2.91 5.68 -4.04 -0.02 2.88 16 7 C -0.16 -2.75 6.02 -27.88 -0.17 -2.92 16 8 C 0.52 10.20 7.83 -10.99 -0.09 10.11 16 9 O -0.57 -12.17 15.98 5.56 0.09 -12.08 16 10 N -0.69 -13.39 4.09 -60.29 -0.25 -13.64 16 11 C 0.14 2.59 4.51 -4.04 -0.02 2.57 16 12 C 0.12 2.26 3.21 -67.42 -0.22 2.04 16 13 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 14 C 0.06 0.91 6.29 37.31 0.23 1.14 16 15 O -0.39 -6.91 10.74 -35.23 -0.38 -7.29 16 16 C 0.04 0.73 6.98 37.31 0.26 0.99 16 17 C 0.10 2.02 4.26 -3.53 -0.02 2.01 16 18 N -0.61 -12.88 2.45 -164.30 -0.40 -13.29 16 19 C -0.27 -6.59 6.61 -15.06 -0.10 -6.69 16 20 H 0.08 2.20 7.12 -52.49 -0.37 1.82 16 21 C 0.05 1.19 5.33 -17.43 -0.09 1.09 16 22 N -0.90 -24.91 13.97 55.49 0.78 -24.13 16 23 Si 0.85 19.36 26.73 -169.99 -4.54 14.81 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.24 -4.98 3.87 56.52 0.22 -4.77 16 27 C 0.64 9.92 8.60 -86.73 -0.75 9.18 16 28 O -0.56 -10.29 17.71 5.09 0.09 -10.20 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.23 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 34 H 0.10 1.64 8.07 -51.93 -0.42 1.22 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.11 2.05 8.14 -51.93 -0.42 1.62 16 37 H 0.41 8.38 7.25 -40.82 -0.30 8.08 16 38 H 0.07 1.40 7.60 -51.93 -0.39 1.01 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.84 6.13 -51.93 -0.32 0.52 16 45 H 0.07 1.52 6.85 -51.93 -0.36 1.17 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -34.19 375.06 -7.64 -41.82 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.97 Total: 10.49 kcal Atomic # 6 Polarization: 26.29 SS G_CDS: -1.44 Total: 24.85 kcal Atomic # 7 Polarization: -67.91 SS G_CDS: -0.14 Total: -68.05 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.20 Total: -29.57 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.54 Total: 14.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.19 -7.64 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724772207.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.330 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds